Strain Fitness in Shewanella oneidensis MR-1 around SO3334

Experiment: L-Methionine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Methionine (N)
3,479,781	-		SO3333	0.32	-1.5
3,479,869	-		SO3333	0.38	-1.5
3,479,974	+		SO3333	0.45	-0.8
3,479,982	-		SO3333	0.46	+0.4
3,480,056	+		SO3333	0.51	+1.3
3,480,136	+		SO3333	0.56	-1.2
3,480,157	+		SO3333	0.58	-2.2
3,480,157	+		SO3333	0.58	-2.5
3,480,214	+		SO3333	0.62	-1.9
3,480,351	-		SO3333	0.71	-0.0
3,480,353	+		SO3333	0.71	+0.0
3,480,388	+		SO3333	0.74	+1.1
3,480,426	+		SO3333	0.76	+0.5
3,480,426	+		SO3333	0.76	+0.0
3,480,426	+		SO3333	0.76	+1.6
3,480,444	+		SO3333	0.78	-2.1
3,480,479	+		SO3333	0.80	-0.6
3,480,487	-		SO3333	0.81	-0.6
3,480,519	-		SO3333	0.83	-1.9
3,480,552	+		SO3333	0.85	+0.2
3,480,619	+		SO3333	0.90	-1.4
3,480,619	+		SO3333	0.90	-1.2
3,480,619	+		SO3333	0.90	+0.8
3,480,619	+		SO3333	0.90	+1.0
3,480,619	+		SO3333	0.90	+0.5
3,480,619	+		SO3333	0.90	-1.4
3,480,619	+		SO3333	0.90	-0.9
3,480,619	+		SO3333	0.90	+0.9
3,480,619	+		SO3333	0.90	+0.5
3,480,627	-				+0.8
3,480,627	-				-0.9
3,480,627	-				+1.0
3,480,627	-				-0.1
3,480,627	-				-1.6
3,480,629	+				+2.1
3,480,629	+				+0.9
3,480,629	+				-1.1
3,480,629	+				-1.6
3,480,637	-				+0.4
3,480,637	-				+0.4
3,480,637	-				+0.7
3,480,637	-				-3.0
3,480,713	-				+1.8
3,480,715	+				+0.5
3,480,734	-				+0.4
3,480,744	-				-0.8
3,480,808	+				+0.4
3,480,816	-				+0.8
3,480,820	+				+0.4
3,480,820	+				+0.7
3,480,838	-				+1.1
3,480,840	-				-2.0
3,480,845	-				+2.2
3,480,928	+				+1.0
3,480,936	-		SO3334	0.10	+1.4
3,480,948	-		SO3334	0.11	-1.4
3,480,987	+		SO3334	0.13	-1.4
3,481,007	+		SO3334	0.14	-3.4
3,481,007	+		SO3334	0.14	-1.2
3,481,007	+		SO3334	0.14	+0.5
3,481,015	-		SO3334	0.15	+0.2
3,481,024	+		SO3334	0.15	-0.4
3,481,032	-		SO3334	0.16	+0.1
3,481,069	-		SO3334	0.18	+0.6
3,481,074	-		SO3334	0.18	-1.8
3,481,074	-		SO3334	0.18	+0.1
3,481,090	+		SO3334	0.19	-2.9
3,481,105	+		SO3334	0.20	-0.7
3,481,113	-		SO3334	0.20	-0.4
3,481,132	-		SO3334	0.21	-1.4
3,481,139	-		SO3334	0.22	-1.7
3,481,152	+		SO3334	0.23	+1.0
3,481,159	+		SO3334	0.23	-0.0
3,481,159	+		SO3334	0.23	-1.2
3,481,261	+		SO3334	0.29	-0.9
3,481,261	+		SO3334	0.29	+1.0
3,481,262	-		SO3334	0.29	+0.6
3,481,266	+		SO3334	0.29	-2.5
3,481,271	+		SO3334	0.29	+0.7
3,481,271	+		SO3334	0.29	+1.8
3,481,286	+		SO3334	0.30	-1.4
3,481,334	+		SO3334	0.33	-0.3
3,481,345	+		SO3334	0.34	+2.0
3,481,346	+		SO3334	0.34	-1.2
3,481,386	-		SO3334	0.36	-0.2
3,481,395	+		SO3334	0.37	-1.3
3,481,453	+		SO3334	0.40	-0.7
3,481,453	+		SO3334	0.40	-1.3
3,481,453	+		SO3334	0.40	-0.5
3,481,453	+		SO3334	0.40	-0.8
3,481,453	+		SO3334	0.40	-2.6
3,481,453	+		SO3334	0.40	+0.2
3,481,461	-		SO3334	0.40	-1.4
3,481,461	-		SO3334	0.40	-0.4
3,481,461	-		SO3334	0.40	+0.4
3,481,461	-		SO3334	0.40	-1.7
3,481,461	-		SO3334	0.40	+1.3
3,481,461	-		SO3334	0.40	+0.4
3,481,520	-		SO3334	0.44	+0.2
3,481,632	+		SO3334	0.50	+0.5
3,481,632	+		SO3334	0.50	+0.2
3,481,632	+		SO3334	0.50	-1.2
3,481,632	+		SO3334	0.50	-1.3
3,481,632	+		SO3334	0.50	-0.3
3,481,640	-		SO3334	0.51	-2.3
3,481,642	+		SO3334	0.51	-2.1
3,481,672	-		SO3334	0.53	-0.1
3,481,725	+		SO3334	0.56	-0.2
3,481,730	-		SO3334	0.56	-1.0
3,481,904	+		SO3334	0.66	-0.2
3,481,912	-		SO3334	0.67	+1.6
3,481,912	-		SO3334	0.67	+0.2
3,481,912	-		SO3334	0.67	+1.4
3,481,912	-		SO3334	0.67	+0.2
3,481,912	-		SO3334	0.67	-2.9
3,481,912	-		SO3334	0.67	-1.3
3,481,912	-		SO3334	0.67	-2.0
3,481,939	-		SO3334	0.68	+1.6
3,481,942	+		SO3334	0.68	+0.6
3,481,942	+		SO3334	0.68	+0.6
3,481,950	-		SO3334	0.69	+0.2
3,481,950	-		SO3334	0.69	+0.3
3,481,950	-		SO3334	0.69	+0.2
3,481,962	+		SO3334	0.70	+0.2
3,481,962	+		SO3334	0.70	+0.2
3,481,962	+		SO3334	0.70	-1.2
3,481,970	-		SO3334	0.70	+0.7
3,481,970	-		SO3334	0.70	-2.1
3,481,970	-		SO3334	0.70	-2.5
3,481,974	+		SO3334	0.70	+0.9
3,482,024	+		SO3334	0.73	-1.1
3,482,024	+		SO3334	0.73	-1.0
3,482,038	+		SO3334	0.74	-1.0
3,482,063	-		SO3334	0.75	-2.3
3,482,130	+		SO3334	0.79	-0.5
3,482,130	+		SO3334	0.79	+0.3
3,482,130	+		SO3334	0.79	+0.4
3,482,130	+		SO3334	0.79	+0.8
3,482,138	-		SO3334	0.80	-1.9
3,482,138	-		SO3334	0.80	-0.7
3,482,138	-		SO3334	0.80	+0.1
3,482,138	-		SO3334	0.80	-2.7
3,482,187	+		SO3334	0.83	+1.4
3,482,192	-		SO3334	0.83	+0.2
3,482,260	-		SO3334	0.87	-2.3
3,482,331	-				+1.0
3,482,342	-				-0.0
3,482,362	-				-1.9
3,482,377	-				-2.6
3,482,425	+				+0.7
3,482,433	-				+0.2
3,482,435	-				+0.2
3,482,435	-				+1.1
3,482,652	-				-1.3
3,482,663	+				-1.2
3,482,671	-				+1.5
3,482,717	+		SO3335	0.13	+1.4
3,482,725	-		SO3335	0.14	+3.6
3,482,856	-		SO3335	0.30	+1.5
3,482,886	+		SO3335	0.34	-1.5
3,482,886	+		SO3335	0.34	+0.5
3,482,886	+		SO3335	0.34	-0.1
3,482,894	-		SO3335	0.35	-1.3
3,482,894	-		SO3335	0.35	-0.9
3,483,000	+		SO3335	0.48	-0.7
3,483,000	+		SO3335	0.48	+1.5
3,483,008	-		SO3335	0.49	+1.0
3,483,008	-		SO3335	0.49	-1.5
3,483,008	-		SO3335	0.49	+0.2
3,483,008	-		SO3335	0.49	-3.3
3,483,008	-		SO3335	0.49	+1.3
3,483,018	-		SO3335	0.50	+0.1
3,483,211	+		SO3335	0.73	-2.8
3,483,241	+		SO3335	0.77	-1.9
3,483,263	+		SO3335	0.80	-1.6
3,483,263	+		SO3335	0.80	-2.2
3,483,286	+		SO3335	0.82	+1.0
3,483,356	+				-1.9