Strain Fitness in Shewanella oneidensis MR-1 around SO2801

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2798 and SO2799 are separated by 160 nucleotidesSO2799 and SO2800 are separated by 118 nucleotidesSO2800 and lpxK overlap by 11 nucleotideslpxK and msbA are separated by 0 nucleotides SO2798: SO2798 - conserved hypothetical protein (NCBI ptt file), at 2,920,954 to 2,921,646 SO2798 SO2799: SO2799 - lipoprotein, putative (NCBI ptt file), at 2,921,807 to 2,922,271 SO2799 SO2800: SO2800 - conserved hypothetical protein (NCBI ptt file), at 2,922,390 to 2,922,569 SO2800 SO2801: lpxK - tetraacyldisaccharide 4'-kinase (NCBI ptt file), at 2,922,559 to 2,923,566 lpxK SO2802: msbA - ABC transporter, ATP-binding protein MsbA (NCBI ptt file), at 2,923,567 to 2,925,372 msbA Position (kb) 2922 2923 2924Strain fitness (log2 ratio) -1 0 1 2at 2921.582 kb on - strandat 2921.627 kb on + strandat 2921.652 kb on + strandat 2921.834 kb on + strandat 2921.842 kb on - strandat 2921.940 kb on + strand, within SO2799at 2921.940 kb on + strand, within SO2799at 2921.948 kb on + strand, within SO2799at 2921.983 kb on - strand, within SO2799at 2922.328 kb on - strandat 2922.347 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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2,921,582 - -0.4
2,921,627 + +2.0
2,921,652 + +0.8
2,921,834 + -1.6
2,921,842 - +0.7
2,921,940 + SO2799 0.29 -1.2
2,921,940 + SO2799 0.29 -0.4
2,921,948 + SO2799 0.30 +0.0
2,921,983 - SO2799 0.38 +0.3
2,922,328 - -0.2
2,922,347 - -0.1

Or see this region's nucleotide sequence