Strain Fitness in Shewanella oneidensis MR-1 around SO2001

Experiment: L-Methionine (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Methionine (N)
2,099,066	-		SO1999	0.16	-1.7
2,099,066	-		SO1999	0.16	-0.5
2,099,120	-		SO1999	0.24	-2.5
2,099,136	+		SO1999	0.26	-0.4
2,099,144	-		SO1999	0.28	+0.9
2,099,180	+		SO1999	0.33	-0.3
2,099,193	+		SO1999	0.35	-0.5
2,099,254	+		SO1999	0.44	+0.8
2,099,282	+		SO1999	0.48	+0.2
2,099,303	-		SO1999	0.52	-1.4
2,099,335	+		SO1999	0.56	-2.8
2,099,336	-		SO1999	0.56	-0.2
2,099,363	+		SO1999	0.61	-2.1
2,099,371	+		SO1999	0.62	-2.3
2,099,381	+		SO1999	0.63	-0.0
2,099,418	-		SO1999	0.69	+0.6
2,099,418	-		SO1999	0.69	+1.0
2,099,474	-		SO1999	0.77	-0.9
2,099,474	-		SO1999	0.77	+0.7
2,099,554	-		SO1999	0.89	-0.6
2,099,600	+				+3.0
2,100,036	-				+0.2
2,100,054	-				+0.8
2,100,097	-				+0.9
2,100,222	+	ushA	SO2001	0.14	+2.0
2,100,360	+	ushA	SO2001	0.22	+1.6
2,100,514	+	ushA	SO2001	0.31	+1.1
2,100,516	-	ushA	SO2001	0.31	-1.8
2,100,529	-	ushA	SO2001	0.32	-0.9
2,100,624	+	ushA	SO2001	0.37	+0.9
2,100,624	+	ushA	SO2001	0.37	+0.8
2,100,624	+	ushA	SO2001	0.37	-0.4
2,100,624	+	ushA	SO2001	0.37	-0.1
2,100,624	+	ushA	SO2001	0.37	-0.9
2,100,629	+	ushA	SO2001	0.37	+0.9
2,100,632	-	ushA	SO2001	0.38	-1.0
2,100,632	-	ushA	SO2001	0.38	-1.2
2,100,712	+	ushA	SO2001	0.42	-0.7
2,100,712	+	ushA	SO2001	0.42	-0.0
2,100,712	+	ushA	SO2001	0.42	-0.4
2,100,720	-	ushA	SO2001	0.43	-1.0
2,100,720	-	ushA	SO2001	0.43	-1.2
2,100,809	-	ushA	SO2001	0.48	-1.5
2,100,812	-	ushA	SO2001	0.48	-2.0
2,100,915	+	ushA	SO2001	0.54	+0.3
2,100,981	-	ushA	SO2001	0.58	+0.2
2,101,031	-	ushA	SO2001	0.61	-0.1
2,101,039	+	ushA	SO2001	0.61	+0.2
2,101,048	-	ushA	SO2001	0.62	-0.1
2,101,064	+	ushA	SO2001	0.63	+1.8
2,101,080	+	ushA	SO2001	0.64	+0.2
2,101,127	-	ushA	SO2001	0.67	-0.3
2,101,127	-	ushA	SO2001	0.67	+1.6
2,101,141	-	ushA	SO2001	0.67	+0.8
2,101,141	-	ushA	SO2001	0.67	+0.3
2,101,163	-	ushA	SO2001	0.69	+0.4
2,101,190	+	ushA	SO2001	0.70	+1.5
2,101,190	+	ushA	SO2001	0.70	-0.2
2,101,291	-	ushA	SO2001	0.76	+0.8
2,101,302	+	ushA	SO2001	0.77	-0.3
2,101,306	-	ushA	SO2001	0.77	+0.8
2,101,310	+	ushA	SO2001	0.77	-1.0
2,101,318	-	ushA	SO2001	0.78	+2.5
2,101,359	+	ushA	SO2001	0.80	-1.3
2,101,367	-	ushA	SO2001	0.81	+1.6
2,101,395	+	ushA	SO2001	0.82	-1.4
2,101,403	-	ushA	SO2001	0.83	+1.3
2,101,405	-	ushA	SO2001	0.83	+0.5
2,101,410	-	ushA	SO2001	0.83	+0.6
2,101,414	+	ushA	SO2001	0.83	+0.7
2,101,422	-	ushA	SO2001	0.84	-1.4
2,101,422	-	ushA	SO2001	0.84	+1.2
2,101,422	-	ushA	SO2001	0.84	-1.3
2,101,480	-	ushA	SO2001	0.87	-0.7
2,101,483	+	ushA	SO2001	0.87	+1.0
2,101,484	+	ushA	SO2001	0.87	+0.9
2,101,484	+	ushA	SO2001	0.87	+0.4
2,101,484	+	ushA	SO2001	0.87	+0.4
2,101,484	+	ushA	SO2001	0.87	-0.8
2,101,484	+	ushA	SO2001	0.87	+0.6
2,101,484	+	ushA	SO2001	0.87	+0.3
2,101,484	+	ushA	SO2001	0.87	+0.4
2,101,484	+	ushA	SO2001	0.87	-1.1
2,101,491	-	ushA	SO2001	0.88	+0.1
2,101,492	-	ushA	SO2001	0.88	-2.1
2,101,492	-	ushA	SO2001	0.88	+0.6
2,101,492	-	ushA	SO2001	0.88	-0.1
2,101,492	-	ushA	SO2001	0.88	-0.5
2,101,492	-	ushA	SO2001	0.88	-2.7
2,101,492	-	ushA	SO2001	0.88	+0.3
2,101,498	+	ushA	SO2001	0.88	+0.3
2,101,505	+	ushA	SO2001	0.89	+1.0
2,101,506	+	ushA	SO2001	0.89	+2.6
2,101,506	+	ushA	SO2001	0.89	-1.5
2,101,514	-	ushA	SO2001	0.89	+0.3
2,101,524	-	ushA	SO2001	0.90	+1.1
2,101,527	+	ushA	SO2001	0.90	-0.5
2,101,535	-				+0.8
2,101,535	-				-0.3
2,101,542	+				+0.7
2,101,547	+				-1.4
2,101,554	-				+0.8
2,101,555	-				-0.2
2,101,559	-				+0.7
2,101,559	-				-0.2
2,101,559	-				-1.7
2,101,561	+				+0.2
2,101,561	+				+2.9
2,101,561	+				-0.5
2,101,561	+				+0.3
2,101,561	+				+0.5
2,101,569	-				-1.0
2,101,569	-				-1.2
2,101,569	-				-2.6
2,101,570	-				-2.2
2,101,576	+				+0.4
2,101,589	-				+0.3
2,101,607	+				+0.8
2,101,616	-				+0.5
2,101,621	+				+0.2
2,101,624	+				-0.5
2,101,624	+				-1.8
2,101,624	+				-1.0
2,101,626	+				+2.1
2,101,626	+				+0.6
2,101,626	+				+0.7
2,101,629	+				-0.7
2,101,629	+				+1.0
2,101,629	-				-0.9
2,101,632	-				-2.3
2,101,632	-				+1.3
2,101,632	-				+0.6
2,101,632	-				-0.1
2,101,632	-				+1.3
2,101,634	-				-0.7
2,101,634	-				+1.3
2,101,637	-				-0.2
2,101,640	+				+1.1
2,101,640	+				+2.3
2,101,640	+				-1.4
2,101,644	-				-0.9
2,101,646	-				-2.2
2,101,667	+				+1.3
2,101,667	+				+1.1
2,101,667	+				+1.7
2,101,667	+				-1.0
2,101,667	+				-0.9
2,101,667	+				-1.0
2,101,667	+				-1.1
2,101,667	+				+0.4
2,101,667	+				-0.9
2,101,667	+				-0.6
2,101,667	+				+0.6
2,101,667	+				+0.8
2,101,667	+				-0.7
2,101,667	+				-1.0
2,101,667	+				-2.9
2,101,667	+				+1.2
2,101,667	+				-0.6
2,101,667	+				-2.5
2,101,667	+				-0.2
2,101,667	+				+1.2
2,101,667	+				-1.5
2,101,667	+				+1.9
2,101,667	+				+0.7
2,101,667	+				-0.2
2,101,667	+				-0.1
2,101,667	+				-1.2
2,101,667	+				-1.3
2,101,667	+				+0.7
2,101,667	+				+0.9
2,101,667	+				-0.1
2,101,667	+				-0.7
2,101,667	+				-1.6
2,101,667	+				+0.3
2,101,667	+				-0.6
2,101,667	+				+1.7
2,101,667	+				+1.2
2,101,667	+				+1.8
2,101,667	+				+1.5
2,101,667	+				+0.0
2,101,667	+				-1.0
2,101,667	+				-2.0
2,101,667	+				-0.5
2,101,667	+				-1.0
2,101,667	+				-0.1
2,101,667	+				+0.1
2,101,667	+				+0.7
2,101,667	+				+0.2
2,101,667	+				-1.8
2,101,667	+				+0.9
2,101,667	+				-1.3
2,101,667	+				-1.2
2,101,667	+				+0.1
2,101,667	+				-0.8
2,101,667	+				-0.8
2,101,667	+				+0.4
2,101,667	+				+1.1
2,101,667	+				+1.1
2,101,667	+				-1.6
2,101,667	+				+0.3
2,101,667	+				-2.5
2,101,667	+				+1.5
2,101,667	+				+0.9
2,101,667	+				+2.4
2,101,667	+				-0.3
2,101,667	+				+0.6
2,101,669	+				+0.5
2,101,669	+				+0.6
2,101,669	+				+1.1
2,101,675	+				+1.1
2,101,675	-				-2.8
2,101,675	-				+2.2
2,101,675	-				+0.1
2,101,675	-				+1.1
2,101,675	-				+1.3
2,101,675	-				+0.8
2,101,675	-				+0.5
2,101,675	-				+1.4
2,101,675	-				-1.4
2,101,675	-				+1.0
2,101,675	-				+1.1
2,101,675	-				+0.3
2,101,675	-				+0.5
2,101,675	-				+0.3
2,101,675	-				-0.9
2,101,675	-				+0.7
2,101,675	-				+1.1
2,101,675	-				+0.9
2,101,675	-				+1.3
2,101,675	-				+0.3
2,101,675	-				+1.5
2,101,675	-				-0.3
2,101,675	-				-1.0
2,101,675	-				-0.4
2,101,675	-				+0.8
2,101,675	-				-2.1
2,101,675	-				-1.4
2,101,675	-				+1.2
2,101,675	-				-1.3
2,101,675	-				-1.1
2,101,675	-				+1.3
2,101,675	-				+0.8
2,101,675	-				-1.0
2,101,675	-				+1.4
2,101,675	-				-2.3
2,101,675	-				+1.8
2,101,675	-				+1.1
2,101,675	-				-3.1
2,101,675	-				+0.0
2,101,675	-				-1.9
2,101,675	-				+1.5
2,101,675	-				+1.0
2,101,675	-				-0.4
2,101,675	-				+1.4
2,101,675	-				+0.8
2,101,675	-				-1.7
2,101,675	-				-1.5
2,101,675	-				-0.1
2,101,675	-				+1.2
2,101,675	-				-0.2
2,101,675	-				+1.2
2,101,675	-				-2.6
2,101,675	-				+0.5
2,101,675	-				+0.1
2,101,675	-				+0.2
2,101,675	-				-1.2
2,101,675	-				+1.1
2,101,675	-				-0.7
2,101,675	-				-0.9
2,101,675	-				+1.9
2,101,675	-				-2.6
2,101,675	-				+0.5
2,101,675	-				+2.7
2,101,675	-				+1.8
2,101,675	-				+0.3
2,101,676	+				+1.2
2,101,677	-				+0.5
2,101,682	-				-0.5
2,101,683	+				+1.5
2,101,684	-				-0.0
2,101,684	-				-1.9
2,101,691	-				+1.3
2,101,691	-				-0.1
2,101,698	+				-0.5
2,101,698	+				+1.0
2,101,706	-				+0.2
2,101,706	-				+1.3
2,101,706	-				+1.7
2,101,706	-				-1.5
2,101,706	-				-0.7
2,101,792	+				+0.7
2,101,792	+				+0.1
2,101,795	-				+2.4
2,101,797	+				+0.4
2,101,797	+				-3.2
2,101,797	+				-0.5
2,101,797	+				-1.2
2,101,797	+				-0.2
2,101,797	+				+0.8
2,101,797	+				+0.4
2,101,797	+				-1.9
2,101,797	+				+2.5
2,101,797	+				+1.6
2,101,797	+				+0.2
2,101,797	+				+2.6
2,101,797	+				-1.3
2,101,797	+				-0.6
2,101,797	+				-0.7
2,101,797	+				+0.4
2,101,797	+				-0.3
2,101,797	+				+0.4
2,101,797	+				+1.6
2,101,797	+				-0.6
2,101,797	+				-1.3
2,101,797	+				+1.8
2,101,797	+				-2.1
2,101,797	+				+2.5
2,101,797	+				-0.7
2,101,797	+				+0.6
2,101,797	+				-0.8
2,101,797	+				+0.2
2,101,797	+				+0.4
2,101,797	+				-0.3
2,101,797	+				+2.7
2,101,797	+				+1.3
2,101,797	+				-1.9
2,101,797	+				+0.8
2,101,797	+				-0.7
2,101,797	+				+0.2
2,101,797	+				+1.7
2,101,797	+				+0.6
2,101,797	+				+1.2
2,101,797	+				-1.3
2,101,797	+				+0.9
2,101,797	+				-1.4
2,101,797	+				+0.8
2,101,797	+				+0.7
2,101,797	+				+1.0
2,101,797	+				-1.4
2,101,799	-				+0.8
2,101,800	-				-0.4
2,101,802	+				+1.0
2,101,802	+				-0.9
2,101,802	+				+0.1
2,101,802	+				+0.1
2,101,802	+				+0.8
2,101,802	+				-1.1
2,101,805	-				+0.9
2,101,805	-				+1.6
2,101,805	-				+1.0
2,101,805	-				+1.5
2,101,805	-				+0.3
2,101,805	-				+0.8
2,101,805	-				-0.1
2,101,805	-				+0.4
2,101,805	-				-0.2
2,101,805	-				+0.2
2,101,805	-				-1.2
2,101,805	-				+1.1
2,101,805	-				-0.0
2,101,805	-				+1.5
2,101,805	-				+0.3
2,101,805	-				+1.1
2,101,805	-				+3.0
2,101,805	-				+0.8
2,101,805	-				+0.4
2,101,805	-				+0.0
2,101,805	-				+0.6
2,101,805	-				-0.2
2,101,805	-				-1.4
2,101,805	-				+1.9
2,101,805	-				-0.7
2,101,805	-				+0.4
2,101,805	-				-1.2
2,101,805	-				+0.4
2,101,805	-				-0.4
2,101,805	-				+1.1
2,101,805	-				+2.1
2,101,805	-				+0.9
2,101,805	-				-0.4
2,101,805	-				+1.7
2,101,805	-				+0.4
2,101,805	-				+1.1
2,101,805	-				+1.2
2,101,805	-				+2.8
2,101,805	-				-2.5
2,101,805	-				-2.2
2,101,805	-				-2.6
2,101,805	-				+0.5
2,101,805	-				-0.1
2,101,805	-				+0.8
2,101,805	-				+1.7
2,101,805	-				+1.8
2,101,805	-				+1.1
2,101,805	-				+0.7
2,101,805	-				-1.2
2,101,805	-				-1.0
2,101,805	-				-1.0
2,101,805	-				+0.6
2,101,805	-				+1.8
2,101,805	-				+0.6
2,101,805	-				+1.0
2,101,805	-				-1.0
2,101,805	-				-0.1
2,101,805	-				-1.0
2,101,810	-				+2.2
2,101,810	-				-0.0
2,101,812	+				-0.6
2,101,815	-				-0.2
2,101,820	-				+1.6
2,101,820	-				+0.8
2,101,839	+				+0.7
2,101,839	+				-0.0
2,101,839	-				-2.0
2,101,845	+				-1.7
2,101,846	+				+0.4
2,101,846	+				-0.5
2,101,847	-				+0.7
2,101,847	-				-0.8
2,101,847	-				+1.4
2,101,850	+				+0.9
2,101,854	-				+1.0
2,101,855	+				+0.8
2,101,855	+				-0.1
2,101,855	+				-1.3
2,101,855	+				+0.2
2,101,855	+				+1.5
2,101,855	+				+0.9
2,101,855	+				+1.6
2,101,855	+				+2.5
2,101,855	+				-0.7
2,101,855	+				+1.2
2,101,855	+				+0.5
2,101,855	+				-1.3
2,101,855	+				+0.6
2,101,855	+				+0.4
2,101,855	+				+0.3
2,101,855	+				-0.8
2,101,863	-				+0.4
2,101,863	-				+0.9
2,101,863	-				-0.6
2,101,863	-				-0.3
2,101,863	-				+2.3
2,101,863	-				+0.9
2,101,863	-				+1.5
2,101,863	-				-0.5
2,101,863	-				+1.8
2,101,863	-				+2.2
2,101,863	-				-0.8
2,101,863	-				-0.3
2,101,863	-				+0.5
2,101,880	+				-2.7
2,101,881	+				+2.6
2,102,002	-				+0.3
2,102,006	+				+1.6
2,102,006	+				+0.0
2,102,006	+				-0.0
2,102,006	+				-0.3
2,102,006	+				+0.5
2,102,006	+				+1.6
2,102,006	+				-1.3
2,102,006	+				+1.3
2,102,006	+				-0.7
2,102,006	+				-1.5
2,102,007	-				-1.1
2,102,014	-				-1.9
2,102,014	-				+0.3
2,102,014	-				-1.3
2,102,014	-				+0.7
2,102,014	-				+0.2
2,102,099	+				-1.8
2,102,099	+				+0.8
2,102,102	+				-1.7
2,102,107	+				-1.5
2,102,107	-				-0.5
2,102,107	-				+0.3
2,102,107	-				+0.4
2,102,112	+				+0.4
2,102,112	+				+0.8
2,102,112	+				-0.2
2,102,112	+				-0.1
2,102,112	+				+0.8
2,102,112	+				+0.1
2,102,112	+				-0.6
2,102,115	-				+0.4
2,102,115	-				-0.4
2,102,115	-				+1.0
2,102,115	-				-1.7
2,102,117	+				+1.6
2,102,120	-				-0.4
2,102,120	-				+1.0
2,102,120	-				-0.5
2,102,120	-				+1.1
2,102,120	-				-1.5
2,102,120	-				+1.5
2,102,120	-				-2.8
2,102,122	+				+0.9
2,102,125	-				-1.0
2,102,125	-				+1.1
2,102,129	+				+0.1
2,102,129	+				+0.3
2,102,137	-				-2.3
2,102,137	-				-1.9
2,102,139	+				-1.3
2,102,178	+		SO2002	0.11	+1.2
2,102,179	-		SO2002	0.11	-0.2
2,102,264	-		SO2002	0.20	+1.1
2,102,268	+		SO2002	0.21	+0.4
2,102,268	+		SO2002	0.21	+0.5
2,102,268	+		SO2002	0.21	+0.9
2,102,268	+		SO2002	0.21	+0.4
2,102,268	+		SO2002	0.21	+1.1
2,102,268	+		SO2002	0.21	-0.6
2,102,268	+		SO2002	0.21	+0.2
2,102,268	+		SO2002	0.21	+1.3
2,102,268	+		SO2002	0.21	+0.3
2,102,268	+		SO2002	0.21	-0.5
2,102,268	+		SO2002	0.21	+2.0
2,102,268	+		SO2002	0.21	+1.0
2,102,268	+		SO2002	0.21	+0.1
2,102,268	+		SO2002	0.21	-0.6
2,102,268	+		SO2002	0.21	-0.7
2,102,268	+		SO2002	0.21	-1.9
2,102,268	+		SO2002	0.21	+0.6
2,102,268	+		SO2002	0.21	-1.8
2,102,276	-		SO2002	0.21	-0.6
2,102,276	-		SO2002	0.21	-1.8
2,102,276	-		SO2002	0.21	-0.0
2,102,276	-		SO2002	0.21	-0.2
2,102,276	-		SO2002	0.21	+0.5
2,102,276	-		SO2002	0.21	-0.5
2,102,276	-		SO2002	0.21	+0.1
2,102,276	-		SO2002	0.21	+0.6
2,102,276	-		SO2002	0.21	-0.4
2,102,276	-		SO2002	0.21	-1.3
2,102,276	-		SO2002	0.21	+1.8
2,102,276	-		SO2002	0.21	-1.6
2,102,276	-		SO2002	0.21	+1.1
2,102,308	+		SO2002	0.25	+0.6
2,102,328	+		SO2002	0.27	-1.2
2,102,329	+		SO2002	0.27	+1.0
2,102,329	+		SO2002	0.27	-0.1
2,102,329	+		SO2002	0.27	-1.3
2,102,361	+		SO2002	0.31	+0.3
2,102,361	+		SO2002	0.31	-0.7
2,102,369	-		SO2002	0.32	-0.6
2,102,369	-		SO2002	0.32	+0.3
2,102,427	+		SO2002	0.38	-2.8
2,102,427	+		SO2002	0.38	+1.1
2,102,430	+		SO2002	0.39	-1.2
2,102,435	-		SO2002	0.39	-0.3
2,102,437	+		SO2002	0.39	+1.6
2,102,440	+		SO2002	0.40	+0.3
2,102,440	+		SO2002	0.40	+1.7
2,102,440	+		SO2002	0.40	-0.6
2,102,444	+		SO2002	0.40	-1.7
2,102,445	-		SO2002	0.40	-0.2
2,102,445	-		SO2002	0.40	-2.4
2,102,448	-		SO2002	0.41	-2.2
2,102,452	-		SO2002	0.41	+0.4
2,102,457	+		SO2002	0.42	-1.4
2,102,464	+		SO2002	0.42	-0.7
2,102,464	+		SO2002	0.42	-1.0
2,102,464	+		SO2002	0.42	-0.8
2,102,465	+		SO2002	0.42	+0.3
2,102,465	+		SO2002	0.42	+1.2
2,102,473	-		SO2002	0.43	+1.6
2,102,499	+		SO2002	0.46	+0.6
2,102,500	+		SO2002	0.46	+0.1
2,102,508	-		SO2002	0.47	-1.5
2,102,547	+		SO2002	0.51	-0.2
2,102,547	+		SO2002	0.51	+0.1
2,102,564	+		SO2002	0.53	-0.4
2,102,577	+		SO2002	0.55	+0.8
2,102,577	+		SO2002	0.55	-1.5
2,102,582	+		SO2002	0.55	-0.5
2,102,582	+		SO2002	0.55	-0.2
2,102,582	+		SO2002	0.55	+0.8
2,102,582	+		SO2002	0.55	-2.4
2,102,585	-		SO2002	0.56	+1.3
2,102,589	+		SO2002	0.56	-0.5
2,102,590	-		SO2002	0.56	+0.5
2,102,590	-		SO2002	0.56	+1.5
2,102,610	-		SO2002	0.58	+2.1
2,102,615	-		SO2002	0.59	+0.5
2,102,624	+		SO2002	0.60	-1.9
2,102,632	-		SO2002	0.61	-4.1
2,102,635	+		SO2002	0.61	+0.8
2,102,635	+		SO2002	0.61	+0.4
2,102,635	+		SO2002	0.61	+1.8
2,102,642	-		SO2002	0.62	+0.8
2,102,643	-		SO2002	0.62	+0.8
2,102,659	-		SO2002	0.64	-0.9
2,102,668	+		SO2002	0.65	-0.4
2,102,668	+		SO2002	0.65	+1.4
2,102,668	+		SO2002	0.65	+1.0
2,102,676	-		SO2002	0.66	-1.8
2,102,676	-		SO2002	0.66	+0.8
2,102,676	-		SO2002	0.66	-2.9
2,102,676	-		SO2002	0.66	+0.9
2,102,676	-		SO2002	0.66	+0.7
2,102,677	-		SO2002	0.66	+1.1
2,102,677	-		SO2002	0.66	+1.3