Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0855 and SO0856 overlap by 4 nucleotides SO0856 and SO0857 are separated by 1 nucleotides
SO0855: SO0855 - conserved hypothetical protein (NCBI ptt file), at 875,921 to 877,198
SO0855
SO0856: SO0856 - conserved hypothetical protein (NCBI ptt file), at 877,195 to 879,888
SO0856
SO0857: SO0857 - ABC transporter, ATP-binding protein (NCBI ptt file), at 879,890 to 880,561
SO0857
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 876.200 kb on + strand, within SO0855 at 876.200 kb on + strand, within SO0855 at 876.208 kb on - strand, within SO0855 at 876.239 kb on - strand, within SO0855 at 876.294 kb on - strand at 876.332 kb on + strand, within SO0855 at 876.342 kb on + strand, within SO0855 at 876.353 kb on + strand, within SO0855 at 876.353 kb on + strand, within SO0855 at 876.464 kb on + strand, within SO0855 at 876.543 kb on - strand, within SO0855 at 876.560 kb on + strand, within SO0855 at 876.670 kb on - strand, within SO0855 at 876.761 kb on + strand, within SO0855 at 876.864 kb on - strand, within SO0855 at 876.938 kb on - strand, within SO0855 at 876.948 kb on + strand, within SO0855 at 876.948 kb on + strand, within SO0855 at 877.127 kb on + strand at 877.162 kb on - strand at 877.193 kb on + strand at 877.201 kb on - strand at 877.210 kb on - strand at 877.270 kb on + strand at 877.298 kb on + strand at 877.316 kb on - strand at 877.389 kb on - strand at 877.535 kb on - strand, within SO0856 at 877.535 kb on - strand, within SO0856 at 877.548 kb on + strand, within SO0856 at 877.579 kb on + strand, within SO0856 at 877.584 kb on + strand, within SO0856 at 877.592 kb on - strand, within SO0856 at 877.680 kb on - strand, within SO0856 at 877.685 kb on - strand, within SO0856 at 877.724 kb on + strand, within SO0856 at 877.799 kb on - strand, within SO0856 at 877.824 kb on - strand, within SO0856 at 877.941 kb on + strand, within SO0856 at 877.949 kb on - strand, within SO0856 at 878.042 kb on + strand, within SO0856 at 878.058 kb on - strand, within SO0856 at 878.121 kb on - strand, within SO0856 at 878.129 kb on - strand, within SO0856 at 878.289 kb on + strand, within SO0856 at 878.297 kb on - strand, within SO0856 at 878.302 kb on - strand, within SO0856 at 878.406 kb on + strand, within SO0856 at 878.440 kb on + strand, within SO0856 at 878.498 kb on - strand, within SO0856 at 878.506 kb on + strand, within SO0856 at 878.554 kb on + strand, within SO0856 at 878.562 kb on - strand, within SO0856 at 878.617 kb on - strand, within SO0856 at 878.647 kb on + strand, within SO0856 at 878.647 kb on + strand, within SO0856 at 878.697 kb on + strand, within SO0856 at 878.697 kb on + strand, within SO0856 at 878.724 kb on - strand, within SO0856 at 878.755 kb on + strand, within SO0856 at 878.765 kb on + strand, within SO0856 at 878.765 kb on + strand, within SO0856 at 878.765 kb on + strand, within SO0856 at 878.765 kb on + strand, within SO0856 at 878.765 kb on + strand, within SO0856 at 878.773 kb on - strand, within SO0856 at 878.773 kb on - strand, within SO0856 at 878.773 kb on - strand, within SO0856 at 878.773 kb on - strand, within SO0856 at 878.773 kb on - strand, within SO0856 at 878.773 kb on - strand, within SO0856 at 878.775 kb on + strand, within SO0856 at 878.775 kb on + strand, within SO0856 at 878.775 kb on + strand, within SO0856 at 878.799 kb on + strand, within SO0856 at 878.799 kb on + strand, within SO0856 at 878.801 kb on - strand, within SO0856 at 878.807 kb on - strand, within SO0856 at 878.825 kb on - strand, within SO0856 at 878.891 kb on - strand, within SO0856 at 878.955 kb on + strand, within SO0856 at 879.093 kb on + strand, within SO0856 at 879.148 kb on - strand, within SO0856 at 879.289 kb on + strand, within SO0856 at 879.294 kb on + strand, within SO0856 at 879.370 kb on + strand, within SO0856 at 879.378 kb on - strand, within SO0856 at 879.378 kb on - strand, within SO0856 at 879.393 kb on + strand, within SO0856 at 879.418 kb on - strand, within SO0856 at 879.469 kb on + strand, within SO0856 at 879.573 kb on + strand, within SO0856 at 879.581 kb on - strand, within SO0856 at 879.581 kb on - strand, within SO0856 at 879.626 kb on - strand at 879.658 kb on - strand at 879.658 kb on - strand at 879.718 kb on - strand at 879.763 kb on + strand at 879.912 kb on + strand at 879.938 kb on + strand at 879.945 kb on - strand at 880.012 kb on + strand, within SO0857 at 880.025 kb on - strand, within SO0857 at 880.148 kb on - strand, within SO0857 at 880.212 kb on - strand, within SO0857 at 880.318 kb on - strand, within SO0857 at 880.358 kb on + strand, within SO0857 at 880.366 kb on - strand, within SO0857 at 880.386 kb on + strand, within SO0857 at 880.386 kb on + strand, within SO0857 at 880.455 kb on + strand, within SO0857 at 880.463 kb on - strand, within SO0857 at 880.497 kb on + strand at 880.497 kb on + strand at 880.497 kb on + strand at 880.497 kb on + strand at 880.500 kb on - strand at 880.505 kb on - strand at 880.505 kb on - strand at 880.643 kb on - strand at 880.668 kb on + strand at 880.681 kb on + strand at 880.750 kb on - strand at 880.752 kb on + strand at 880.828 kb on + strand at 880.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 876,200 + SO0855 0.22 -0.4 876,200 + SO0855 0.22 -1.5 876,208 - SO0855 0.22 -3.2 876,239 - SO0855 0.25 +0.7 876,294 - +1.3 876,332 + SO0855 0.32 -1.1 876,342 + SO0855 0.33 +0.1 876,353 + SO0855 0.34 -0.2 876,353 + SO0855 0.34 +0.7 876,464 + SO0855 0.42 -2.0 876,543 - SO0855 0.49 +0.3 876,560 + SO0855 0.50 -4.1 876,670 - SO0855 0.59 -0.2 876,761 + SO0855 0.66 -0.9 876,864 - SO0855 0.74 -1.9 876,938 - SO0855 0.80 +0.7 876,948 + SO0855 0.80 -0.9 876,948 + SO0855 0.80 +0.4 877,127 + -0.9 877,162 - -1.7 877,193 + -0.5 877,201 - +0.8 877,210 - -2.2 877,270 + -0.8 877,298 + -1.1 877,316 - +0.2 877,389 - -2.8 877,535 - SO0856 0.13 -1.6 877,535 - SO0856 0.13 -0.2 877,548 + SO0856 0.13 -1.1 877,579 + SO0856 0.14 +0.2 877,584 + SO0856 0.14 -0.9 877,592 - SO0856 0.15 -0.3 877,680 - SO0856 0.18 +1.9 877,685 - SO0856 0.18 -0.3 877,724 + SO0856 0.20 +0.1 877,799 - SO0856 0.22 -0.1 877,824 - SO0856 0.23 +0.0 877,941 + SO0856 0.28 -0.5 877,949 - SO0856 0.28 -0.5 878,042 + SO0856 0.31 -0.3 878,058 - SO0856 0.32 +0.1 878,121 - SO0856 0.34 -0.3 878,129 - SO0856 0.35 -0.3 878,289 + SO0856 0.41 -0.8 878,297 - SO0856 0.41 +0.5 878,302 - SO0856 0.41 +0.4 878,406 + SO0856 0.45 -1.0 878,440 + SO0856 0.46 -2.6 878,498 - SO0856 0.48 +0.6 878,506 + SO0856 0.49 -2.3 878,554 + SO0856 0.50 -0.9 878,562 - SO0856 0.51 -0.9 878,617 - SO0856 0.53 -1.7 878,647 + SO0856 0.54 +0.1 878,647 + SO0856 0.54 -0.5 878,697 + SO0856 0.56 -2.4 878,697 + SO0856 0.56 +0.1 878,724 - SO0856 0.57 -1.3 878,755 + SO0856 0.58 -2.3 878,765 + SO0856 0.58 +0.3 878,765 + SO0856 0.58 +0.5 878,765 + SO0856 0.58 +0.3 878,765 + SO0856 0.58 -0.8 878,765 + SO0856 0.58 +0.0 878,773 - SO0856 0.59 -0.7 878,773 - SO0856 0.59 +0.6 878,773 - SO0856 0.59 +1.3 878,773 - SO0856 0.59 +0.4 878,773 - SO0856 0.59 +0.0 878,773 - SO0856 0.59 -2.1 878,775 + SO0856 0.59 -1.6 878,775 + SO0856 0.59 -3.5 878,775 + SO0856 0.59 -1.4 878,799 + SO0856 0.60 +0.4 878,799 + SO0856 0.60 -0.2 878,801 - SO0856 0.60 -1.4 878,807 - SO0856 0.60 -1.0 878,825 - SO0856 0.61 -0.9 878,891 - SO0856 0.63 -2.1 878,955 + SO0856 0.65 -1.1 879,093 + SO0856 0.70 -0.7 879,148 - SO0856 0.72 -0.9 879,289 + SO0856 0.78 +0.2 879,294 + SO0856 0.78 -2.2 879,370 + SO0856 0.81 -3.1 879,378 - SO0856 0.81 -1.6 879,378 - SO0856 0.81 -0.5 879,393 + SO0856 0.82 -1.1 879,418 - SO0856 0.83 -0.4 879,469 + SO0856 0.84 -0.3 879,573 + SO0856 0.88 +0.8 879,581 - SO0856 0.89 -2.1 879,581 - SO0856 0.89 +0.2 879,626 - +0.7 879,658 - -0.3 879,658 - -0.2 879,718 - -1.6 879,763 + +6.6 879,912 + +0.6 879,938 + +0.6 879,945 - -1.3 880,012 + SO0857 0.18 +0.8 880,025 - SO0857 0.20 -0.8 880,148 - SO0857 0.38 -0.1 880,212 - SO0857 0.48 -0.7 880,318 - SO0857 0.64 -1.1 880,358 + SO0857 0.70 -1.6 880,366 - SO0857 0.71 +0.0 880,386 + SO0857 0.74 -0.7 880,386 + SO0857 0.74 -0.1 880,455 + SO0857 0.84 -0.1 880,463 - SO0857 0.85 -0.2 880,497 + -0.6 880,497 + -0.3 880,497 + -0.8 880,497 + -1.8 880,500 - -0.4 880,505 - -1.0 880,505 - -1.9 880,643 - +1.7 880,668 + +1.6 880,681 + -0.6 880,750 - -1.6 880,752 + +0.0 880,828 + -0.2 880,830 - -0.4
Or see this region's nucleotide sequence