Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0390.1 and SO0391 are separated by 8 nucleotides SO0391 and SO0392 are separated by 124 nucleotides SO0392 and fis are separated by 240 nucleotides fis and SO0394 are separated by 16 nucleotides
SO0390.1: SO0390.1 - hypothetical protein (NCBI ptt file), at 404,834 to 405,319
SO0390.1
SO0391: SO0391 - hypothetical protein (NCBI ptt file), at 405,328 to 405,930
SO0391
SO0392: SO0392 - lipoprotein, putative (NCBI ptt file), at 406,055 to 406,657
SO0392
SO0393: fis - DNA-binding protein Fis (NCBI ptt file), at 406,898 to 407,203
fis
SO0394: SO0394 - conserved hypothetical protein (NCBI ptt file), at 407,220 to 408,188
SO0394
Position (kb) 406
407 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 405.074 kb on + strand, within SO0390.1 at 405.074 kb on - strand, within SO0390.1 at 405.080 kb on - strand, within SO0390.1 at 405.082 kb on - strand, within SO0390.1 at 405.082 kb on - strand, within SO0390.1 at 405.190 kb on + strand, within SO0390.1 at 405.190 kb on + strand, within SO0390.1 at 405.229 kb on - strand, within SO0390.1 at 405.232 kb on + strand, within SO0390.1 at 405.232 kb on + strand, within SO0390.1 at 405.232 kb on + strand, within SO0390.1 at 405.232 kb on + strand, within SO0390.1 at 405.240 kb on - strand, within SO0390.1 at 405.254 kb on - strand, within SO0390.1 at 405.279 kb on + strand at 405.279 kb on + strand at 405.279 kb on + strand at 405.287 kb on - strand at 405.330 kb on + strand at 405.339 kb on - strand at 405.373 kb on + strand at 405.495 kb on + strand, within SO0391 at 405.530 kb on + strand, within SO0391 at 405.530 kb on + strand, within SO0391 at 405.530 kb on + strand, within SO0391 at 405.530 kb on + strand, within SO0391 at 405.530 kb on + strand, within SO0391 at 405.530 kb on + strand, within SO0391 at 405.538 kb on - strand, within SO0391 at 405.538 kb on - strand, within SO0391 at 405.538 kb on - strand, within SO0391 at 405.550 kb on - strand, within SO0391 at 405.585 kb on + strand, within SO0391 at 405.667 kb on + strand, within SO0391 at 405.667 kb on + strand, within SO0391 at 405.667 kb on + strand, within SO0391 at 405.670 kb on - strand, within SO0391 at 405.675 kb on - strand, within SO0391 at 405.675 kb on - strand, within SO0391 at 405.675 kb on - strand, within SO0391 at 405.675 kb on - strand, within SO0391 at 405.675 kb on - strand, within SO0391 at 405.675 kb on - strand, within SO0391 at 405.723 kb on + strand, within SO0391 at 405.732 kb on - strand, within SO0391 at 405.755 kb on - strand, within SO0391 at 405.789 kb on - strand, within SO0391 at 405.805 kb on + strand, within SO0391 at 405.810 kb on + strand, within SO0391 at 405.843 kb on + strand, within SO0391 at 405.843 kb on + strand, within SO0391 at 405.857 kb on - strand, within SO0391 at 405.899 kb on + strand at 405.899 kb on + strand at 405.907 kb on - strand at 405.953 kb on + strand at 405.971 kb on - strand at 405.973 kb on - strand at 405.985 kb on - strand at 406.024 kb on + strand at 406.114 kb on - strand at 406.146 kb on - strand, within SO0392 at 406.182 kb on + strand, within SO0392 at 406.182 kb on - strand, within SO0392 at 406.200 kb on - strand, within SO0392 at 406.200 kb on - strand, within SO0392 at 406.212 kb on - strand, within SO0392 at 406.240 kb on - strand, within SO0392 at 406.240 kb on - strand, within SO0392 at 406.306 kb on + strand, within SO0392 at 406.314 kb on - strand, within SO0392 at 406.314 kb on - strand, within SO0392 at 406.333 kb on + strand, within SO0392 at 406.333 kb on + strand, within SO0392 at 406.334 kb on - strand, within SO0392 at 406.339 kb on - strand, within SO0392 at 406.351 kb on - strand, within SO0392 at 406.396 kb on + strand, within SO0392 at 406.404 kb on - strand, within SO0392 at 406.437 kb on - strand, within SO0392 at 406.439 kb on + strand, within SO0392 at 406.447 kb on - strand, within SO0392 at 406.499 kb on - strand, within SO0392 at 406.533 kb on + strand, within SO0392 at 406.537 kb on - strand, within SO0392 at 406.547 kb on + strand, within SO0392 at 406.555 kb on - strand, within SO0392 at 406.729 kb on + strand at 406.747 kb on - strand at 406.748 kb on + strand at 406.753 kb on + strand at 406.755 kb on + strand at 406.756 kb on - strand at 406.786 kb on + strand at 406.786 kb on + strand at 406.794 kb on - strand at 406.881 kb on + strand at 407.055 kb on - strand, within fis at 407.132 kb on - strand, within fis at 407.160 kb on + strand, within fis at 407.278 kb on + strand at 407.286 kb on - strand at 407.462 kb on + strand, within SO0394 at 407.462 kb on + strand, within SO0394 at 407.470 kb on - strand, within SO0394 at 407.542 kb on + strand, within SO0394 at 407.550 kb on - strand, within SO0394 at 407.550 kb on - strand, within SO0394 at 407.555 kb on - strand, within SO0394
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 405,074 + SO0390.1 0.49 +2.2 405,074 - SO0390.1 0.49 +0.1 405,080 - SO0390.1 0.51 -0.6 405,082 - SO0390.1 0.51 +1.4 405,082 - SO0390.1 0.51 +0.5 405,190 + SO0390.1 0.73 -1.2 405,190 + SO0390.1 0.73 -0.1 405,229 - SO0390.1 0.81 -0.5 405,232 + SO0390.1 0.82 -1.7 405,232 + SO0390.1 0.82 -2.2 405,232 + SO0390.1 0.82 -1.3 405,232 + SO0390.1 0.82 +0.3 405,240 - SO0390.1 0.84 +0.6 405,254 - SO0390.1 0.86 -0.7 405,279 + +0.9 405,279 + +0.7 405,279 + +1.0 405,287 - +1.2 405,330 + +0.4 405,339 - -2.9 405,373 + +1.4 405,495 + SO0391 0.28 +0.4 405,530 + SO0391 0.33 -1.7 405,530 + SO0391 0.33 -2.2 405,530 + SO0391 0.33 -1.1 405,530 + SO0391 0.33 +1.0 405,530 + SO0391 0.33 -0.1 405,530 + SO0391 0.33 +2.0 405,538 - SO0391 0.35 -0.1 405,538 - SO0391 0.35 +0.0 405,538 - SO0391 0.35 +1.0 405,550 - SO0391 0.37 -2.1 405,585 + SO0391 0.43 +1.1 405,667 + SO0391 0.56 -2.1 405,667 + SO0391 0.56 +0.8 405,667 + SO0391 0.56 -1.1 405,670 - SO0391 0.57 -2.1 405,675 - SO0391 0.58 +1.0 405,675 - SO0391 0.58 -0.0 405,675 - SO0391 0.58 -1.4 405,675 - SO0391 0.58 -3.7 405,675 - SO0391 0.58 +0.6 405,675 - SO0391 0.58 -0.6 405,723 + SO0391 0.66 -0.9 405,732 - SO0391 0.67 -1.5 405,755 - SO0391 0.71 -0.8 405,789 - SO0391 0.76 -1.5 405,805 + SO0391 0.79 +0.1 405,810 + SO0391 0.80 -1.3 405,843 + SO0391 0.85 +0.3 405,843 + SO0391 0.85 +1.0 405,857 - SO0391 0.88 +2.3 405,899 + +0.3 405,899 + +0.9 405,907 - -0.1 405,953 + +0.4 405,971 - +0.4 405,973 - +0.2 405,985 - -0.8 406,024 + -0.8 406,114 - -1.9 406,146 - SO0392 0.15 -0.5 406,182 + SO0392 0.21 -0.3 406,182 - SO0392 0.21 +0.9 406,200 - SO0392 0.24 -1.7 406,200 - SO0392 0.24 -0.7 406,212 - SO0392 0.26 +0.9 406,240 - SO0392 0.31 -4.1 406,240 - SO0392 0.31 +0.6 406,306 + SO0392 0.42 +0.6 406,314 - SO0392 0.43 +0.2 406,314 - SO0392 0.43 -1.4 406,333 + SO0392 0.46 -1.2 406,333 + SO0392 0.46 +0.9 406,334 - SO0392 0.46 -0.4 406,339 - SO0392 0.47 -0.4 406,351 - SO0392 0.49 +1.0 406,396 + SO0392 0.57 -1.3 406,404 - SO0392 0.58 -0.1 406,437 - SO0392 0.63 -1.9 406,439 + SO0392 0.64 +1.5 406,447 - SO0392 0.65 +1.3 406,499 - SO0392 0.74 -2.5 406,533 + SO0392 0.79 +1.5 406,537 - SO0392 0.80 -2.3 406,547 + SO0392 0.82 -1.6 406,555 - SO0392 0.83 -1.7 406,729 + +0.4 406,747 - +0.1 406,748 + +1.1 406,753 + +0.5 406,755 + -0.8 406,756 - +0.7 406,786 + -1.6 406,786 + -2.2 406,794 - -1.7 406,881 + -1.6 407,055 - fis SO0393 0.51 -0.6 407,132 - fis SO0393 0.76 -0.1 407,160 + fis SO0393 0.86 -1.1 407,278 + +2.6 407,286 - +0.6 407,462 + SO0394 0.25 -0.3 407,462 + SO0394 0.25 +3.4 407,470 - SO0394 0.26 +0.9 407,542 + SO0394 0.33 +0.2 407,550 - SO0394 0.34 -1.8 407,550 - SO0394 0.34 +0.8 407,555 - SO0394 0.35 +0.8
Or see this region's nucleotide sequence