Strain Fitness in Shewanella oneidensis MR-1 around SO0383
Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Methionine (N) |
---|---|---|---|---|---|
remove | |||||
396,296 | + | hsdS-1 | SO0382 | 0.24 | -0.4 |
396,309 | - | hsdS-1 | SO0382 | 0.25 | +0.3 |
396,318 | + | hsdS-1 | SO0382 | 0.25 | +0.7 |
396,321 | - | hsdS-1 | SO0382 | 0.26 | -0.6 |
396,323 | + | hsdS-1 | SO0382 | 0.26 | +1.1 |
396,323 | + | hsdS-1 | SO0382 | 0.26 | -0.9 |
396,323 | + | hsdS-1 | SO0382 | 0.26 | +1.1 |
396,323 | + | hsdS-1 | SO0382 | 0.26 | -1.5 |
396,323 | + | hsdS-1 | SO0382 | 0.26 | +0.7 |
396,326 | - | hsdS-1 | SO0382 | 0.26 | +0.8 |
396,330 | + | hsdS-1 | SO0382 | 0.26 | -2.2 |
396,331 | - | hsdS-1 | SO0382 | 0.26 | -1.2 |
396,331 | - | hsdS-1 | SO0382 | 0.26 | -0.8 |
396,355 | + | hsdS-1 | SO0382 | 0.28 | +0.5 |
396,363 | - | hsdS-1 | SO0382 | 0.29 | +0.4 |
396,410 | + | hsdS-1 | SO0382 | 0.32 | +2.6 |
396,421 | - | hsdS-1 | SO0382 | 0.33 | +1.4 |
396,428 | + | hsdS-1 | SO0382 | 0.34 | +1.5 |
396,428 | + | hsdS-1 | SO0382 | 0.34 | +1.9 |
396,434 | + | hsdS-1 | SO0382 | 0.34 | +0.3 |
396,436 | - | hsdS-1 | SO0382 | 0.34 | +0.6 |
396,485 | + | hsdS-1 | SO0382 | 0.38 | -0.3 |
396,501 | + | hsdS-1 | SO0382 | 0.39 | -0.3 |
396,501 | + | hsdS-1 | SO0382 | 0.39 | -0.5 |
396,502 | - | hsdS-1 | SO0382 | 0.39 | -0.4 |
396,509 | - | hsdS-1 | SO0382 | 0.40 | -0.7 |
396,509 | - | hsdS-1 | SO0382 | 0.40 | +0.7 |
396,509 | - | hsdS-1 | SO0382 | 0.40 | +1.2 |
396,509 | - | hsdS-1 | SO0382 | 0.40 | -0.1 |
396,518 | - | hsdS-1 | SO0382 | 0.41 | +1.1 |
396,536 | + | hsdS-1 | SO0382 | 0.42 | +1.1 |
396,557 | + | hsdS-1 | SO0382 | 0.43 | +0.5 |
396,559 | + | hsdS-1 | SO0382 | 0.44 | +1.3 |
396,567 | + | hsdS-1 | SO0382 | 0.44 | -0.7 |
396,572 | - | hsdS-1 | SO0382 | 0.45 | -1.7 |
396,572 | - | hsdS-1 | SO0382 | 0.45 | -0.7 |
396,574 | + | hsdS-1 | SO0382 | 0.45 | +1.1 |
396,582 | - | hsdS-1 | SO0382 | 0.45 | -0.4 |
396,596 | - | hsdS-1 | SO0382 | 0.46 | +0.3 |
396,622 | - | hsdS-1 | SO0382 | 0.48 | -0.5 |
396,668 | + | hsdS-1 | SO0382 | 0.52 | +0.6 |
396,668 | + | hsdS-1 | SO0382 | 0.52 | -0.9 |
396,668 | + | hsdS-1 | SO0382 | 0.52 | -0.4 |
396,674 | + | hsdS-1 | SO0382 | 0.52 | +0.5 |
396,676 | - | hsdS-1 | SO0382 | 0.53 | -1.3 |
396,677 | + | hsdS-1 | SO0382 | 0.53 | +0.7 |
396,685 | - | hsdS-1 | SO0382 | 0.53 | -2.7 |
396,685 | - | hsdS-1 | SO0382 | 0.53 | -0.8 |
396,721 | - | hsdS-1 | SO0382 | 0.56 | -2.5 |
396,721 | - | hsdS-1 | SO0382 | 0.56 | +0.9 |
396,766 | + | hsdS-1 | SO0382 | 0.59 | +2.2 |
396,766 | + | hsdS-1 | SO0382 | 0.59 | -1.4 |
396,774 | - | hsdS-1 | SO0382 | 0.60 | +0.9 |
396,790 | - | hsdS-1 | SO0382 | 0.61 | +0.6 |
396,793 | + | hsdS-1 | SO0382 | 0.61 | -0.0 |
396,793 | + | hsdS-1 | SO0382 | 0.61 | -1.2 |
396,804 | + | hsdS-1 | SO0382 | 0.62 | +0.2 |
396,807 | - | hsdS-1 | SO0382 | 0.62 | -0.0 |
396,856 | + | hsdS-1 | SO0382 | 0.66 | -1.8 |
396,876 | + | hsdS-1 | SO0382 | 0.68 | +1.1 |
396,884 | - | hsdS-1 | SO0382 | 0.68 | -1.1 |
396,940 | + | hsdS-1 | SO0382 | 0.72 | -1.3 |
396,947 | + | hsdS-1 | SO0382 | 0.73 | +0.5 |
396,947 | + | hsdS-1 | SO0382 | 0.73 | +1.2 |
396,947 | + | hsdS-1 | SO0382 | 0.73 | +0.0 |
396,947 | + | hsdS-1 | SO0382 | 0.73 | -0.5 |
396,947 | + | hsdS-1 | SO0382 | 0.73 | -2.0 |
396,955 | - | hsdS-1 | SO0382 | 0.74 | +0.4 |
396,955 | - | hsdS-1 | SO0382 | 0.74 | -1.2 |
396,960 | - | hsdS-1 | SO0382 | 0.74 | +0.4 |
396,969 | + | hsdS-1 | SO0382 | 0.75 | +1.1 |
396,996 | + | hsdS-1 | SO0382 | 0.77 | -1.8 |
397,097 | + | hsdS-1 | SO0382 | 0.84 | +1.5 |
397,129 | + | hsdS-1 | SO0382 | 0.87 | -0.8 |
397,130 | + | hsdS-1 | SO0382 | 0.87 | -1.7 |
397,137 | - | hsdS-1 | SO0382 | 0.87 | +0.6 |
397,154 | - | hsdS-1 | SO0382 | 0.89 | -3.8 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.2 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -1.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.6 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +1.2 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.8 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.2 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -1.6 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -1.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -2.3 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.3 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.1 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -1.6 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -3.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +1.3 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +2.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -2.6 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.7 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -3.6 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +1.1 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.4 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.1 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.8 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -2.2 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.3 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.5 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +0.0 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -0.1 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | -1.1 |
397,164 | + | hsdS-1 | SO0382 | 0.89 | +1.4 |
397,172 | - | +0.7 | |||
397,172 | - | -1.8 | |||
397,172 | - | +1.7 | |||
397,172 | - | -0.1 | |||
397,172 | - | +0.6 | |||
397,172 | - | -0.0 | |||
397,172 | - | -1.4 | |||
397,172 | - | -1.2 | |||
397,172 | - | +0.9 | |||
397,172 | - | -0.9 | |||
397,172 | - | +0.5 | |||
397,172 | - | +0.5 | |||
397,172 | - | +0.8 | |||
397,172 | - | +1.2 | |||
397,172 | - | +0.4 | |||
397,172 | - | +0.3 | |||
397,172 | - | -2.1 | |||
397,172 | - | -1.9 | |||
397,172 | - | -0.4 | |||
397,172 | - | +1.8 | |||
397,172 | - | +0.8 | |||
397,172 | - | -0.1 | |||
397,172 | - | -1.8 | |||
397,172 | - | -2.1 | |||
397,172 | - | +0.2 | |||
397,172 | - | -0.7 | |||
397,172 | - | +0.9 | |||
397,184 | + | +0.2 | |||
397,184 | + | +0.8 | |||
397,192 | - | -1.3 | |||
397,201 | + | -0.9 | |||
397,295 | - | +0.7 | |||
397,304 | + | +0.6 | |||
397,306 | - | -1.6 | |||
397,307 | - | -0.9 | |||
397,319 | - | -1.8 | |||
397,320 | - | -1.4 | |||
397,320 | - | +0.6 | |||
397,325 | - | +0.2 | |||
397,336 | + | -2.3 | |||
397,349 | - | +0.0 | |||
397,349 | - | -1.8 | |||
397,374 | - | +3.4 | |||
397,378 | + | +2.3 | |||
397,378 | - | -0.2 | |||
397,387 | + | -0.9 | |||
397,408 | + | +0.0 | |||
397,416 | - | -0.1 | |||
397,458 | + | +0.4 | |||
397,463 | + | +1.7 | |||
397,463 | + | +0.5 | |||
397,464 | - | +0.6 | |||
397,471 | - | hsdM-1 | SO0383 | 0.10 | -3.2 |
397,478 | + | hsdM-1 | SO0383 | 0.11 | -1.1 |
397,488 | + | hsdM-1 | SO0383 | 0.11 | -1.3 |
397,488 | + | hsdM-1 | SO0383 | 0.11 | +1.2 |
397,488 | + | hsdM-1 | SO0383 | 0.11 | -0.9 |
397,506 | - | hsdM-1 | SO0383 | 0.12 | -1.8 |
397,534 | - | hsdM-1 | SO0383 | 0.14 | +0.7 |
397,568 | + | hsdM-1 | SO0383 | 0.16 | -0.7 |
397,580 | + | hsdM-1 | SO0383 | 0.16 | -2.0 |
397,580 | + | hsdM-1 | SO0383 | 0.16 | -0.3 |
397,585 | + | hsdM-1 | SO0383 | 0.17 | +0.5 |
397,586 | - | hsdM-1 | SO0383 | 0.17 | -1.5 |
397,588 | - | hsdM-1 | SO0383 | 0.17 | +1.5 |
397,601 | - | hsdM-1 | SO0383 | 0.18 | -0.6 |
397,603 | - | hsdM-1 | SO0383 | 0.18 | +0.2 |
397,608 | - | hsdM-1 | SO0383 | 0.18 | -0.5 |
397,617 | - | hsdM-1 | SO0383 | 0.18 | -0.8 |
397,733 | + | hsdM-1 | SO0383 | 0.25 | +0.7 |
397,793 | + | hsdM-1 | SO0383 | 0.28 | +1.0 |
397,819 | + | hsdM-1 | SO0383 | 0.30 | -1.0 |
397,829 | + | hsdM-1 | SO0383 | 0.31 | -2.0 |
397,829 | + | hsdM-1 | SO0383 | 0.31 | +0.2 |
397,829 | + | hsdM-1 | SO0383 | 0.31 | -2.0 |
397,888 | - | hsdM-1 | SO0383 | 0.34 | +2.2 |
397,989 | + | hsdM-1 | SO0383 | 0.40 | -1.1 |
397,989 | + | hsdM-1 | SO0383 | 0.40 | +1.0 |
397,994 | + | hsdM-1 | SO0383 | 0.40 | -1.5 |
397,994 | + | hsdM-1 | SO0383 | 0.40 | +0.7 |
397,994 | + | hsdM-1 | SO0383 | 0.40 | -0.1 |
398,012 | + | hsdM-1 | SO0383 | 0.41 | +0.9 |
398,096 | + | hsdM-1 | SO0383 | 0.46 | -1.0 |
398,096 | + | hsdM-1 | SO0383 | 0.46 | -0.7 |
398,101 | + | hsdM-1 | SO0383 | 0.46 | -0.4 |
398,104 | - | hsdM-1 | SO0383 | 0.46 | -0.1 |
398,106 | + | hsdM-1 | SO0383 | 0.46 | -1.3 |
398,149 | + | hsdM-1 | SO0383 | 0.49 | -0.9 |
398,157 | - | hsdM-1 | SO0383 | 0.49 | -0.5 |
398,157 | - | hsdM-1 | SO0383 | 0.49 | +1.0 |
398,194 | - | hsdM-1 | SO0383 | 0.51 | -1.3 |
398,195 | - | hsdM-1 | SO0383 | 0.51 | +0.8 |
398,231 | + | hsdM-1 | SO0383 | 0.53 | -0.8 |
398,289 | - | hsdM-1 | SO0383 | 0.57 | -1.1 |
398,313 | - | hsdM-1 | SO0383 | 0.58 | -2.5 |
398,313 | - | hsdM-1 | SO0383 | 0.58 | -0.3 |
398,318 | - | hsdM-1 | SO0383 | 0.58 | -1.9 |
398,329 | - | hsdM-1 | SO0383 | 0.59 | +0.9 |
398,355 | - | hsdM-1 | SO0383 | 0.60 | -0.2 |
398,355 | - | hsdM-1 | SO0383 | 0.60 | +0.4 |
398,399 | - | hsdM-1 | SO0383 | 0.63 | +0.8 |
398,399 | - | hsdM-1 | SO0383 | 0.63 | +0.2 |
398,425 | + | hsdM-1 | SO0383 | 0.64 | -0.6 |
398,488 | + | hsdM-1 | SO0383 | 0.68 | -1.3 |
398,488 | + | hsdM-1 | SO0383 | 0.68 | +0.2 |
398,526 | + | hsdM-1 | SO0383 | 0.70 | +0.8 |
398,526 | + | hsdM-1 | SO0383 | 0.70 | -0.5 |
398,526 | + | hsdM-1 | SO0383 | 0.70 | -1.4 |
398,527 | - | hsdM-1 | SO0383 | 0.70 | +0.7 |
398,534 | - | hsdM-1 | SO0383 | 0.71 | -0.9 |
398,539 | - | hsdM-1 | SO0383 | 0.71 | -0.4 |
398,559 | - | hsdM-1 | SO0383 | 0.72 | -1.1 |
398,568 | + | hsdM-1 | SO0383 | 0.73 | -0.4 |
398,568 | + | hsdM-1 | SO0383 | 0.73 | -0.5 |
398,576 | - | hsdM-1 | SO0383 | 0.73 | -1.3 |
398,576 | - | hsdM-1 | SO0383 | 0.73 | -1.2 |
398,576 | - | hsdM-1 | SO0383 | 0.73 | +1.2 |
398,609 | + | hsdM-1 | SO0383 | 0.75 | +0.3 |
398,686 | - | hsdM-1 | SO0383 | 0.79 | +0.5 |
398,718 | - | hsdM-1 | SO0383 | 0.81 | -1.6 |
398,743 | + | hsdM-1 | SO0383 | 0.83 | -0.3 |
398,763 | + | hsdM-1 | SO0383 | 0.84 | +1.2 |
398,771 | - | hsdM-1 | SO0383 | 0.84 | +0.8 |
398,778 | - | hsdM-1 | SO0383 | 0.85 | -0.7 |
398,813 | - | hsdM-1 | SO0383 | 0.87 | -0.3 |
398,845 | + | hsdM-1 | SO0383 | 0.88 | -0.8 |
398,893 | - | +0.2 | |||
398,914 | - | +0.1 | |||
398,919 | + | +0.4 | |||
399,042 | - | +0.0 | |||
399,147 | + | -2.0 | |||
399,155 | - | -0.9 | |||
399,158 | - | -3.2 | |||
399,191 | - | -1.1 | |||
399,203 | + | -1.9 | |||
399,223 | + | +1.1 | |||
399,453 | + | -0.1 | |||
399,453 | + | +0.7 | |||
399,453 | + | -0.2 | |||
399,453 | + | -2.0 | |||
399,453 | + | +0.2 | |||
399,461 | - | -0.8 | |||
399,461 | - | -2.0 | |||
399,463 | + | -0.0 | |||
399,468 | + | -0.7 | |||
399,488 | + | -2.3 | |||
399,488 | + | +1.5 | |||
399,488 | + | +0.9 | |||
399,488 | + | +0.9 | |||
399,488 | + | -1.1 | |||
399,488 | + | -0.4 | |||
399,488 | + | -1.8 | |||
399,488 | + | -0.6 | |||
399,488 | + | +1.1 | |||
399,488 | + | -0.4 | |||
399,488 | + | -0.2 | |||
399,488 | + | +1.8 | |||
399,496 | - | -3.9 | |||
399,496 | - | -3.5 | |||
399,496 | - | +0.6 | |||
399,496 | - | +0.0 | |||
399,600 | + | +0.5 | |||
399,656 | + | SO0384 | 0.16 | -0.5 | |
399,656 | + | SO0384 | 0.16 | -0.4 | |
399,657 | + | SO0384 | 0.16 | -1.1 | |
399,657 | - | SO0384 | 0.16 | -1.7 | |
399,664 | - | SO0384 | 0.18 | +0.2 | |
399,664 | - | SO0384 | 0.18 | +0.3 | |
399,664 | - | SO0384 | 0.18 | +0.8 | |
399,665 | - | SO0384 | 0.18 | +0.5 | |
399,705 | + | SO0384 | 0.24 | -1.5 | |
399,747 | + | SO0384 | 0.30 | -0.9 | |
399,755 | - | SO0384 | 0.31 | -1.7 | |
399,775 | - | SO0384 | 0.35 | -0.8 | |
399,795 | - | SO0384 | 0.38 | +0.1 | |
399,802 | + | SO0384 | 0.39 | -0.9 | |
399,810 | - | SO0384 | 0.40 | +0.6 | |
399,865 | - | SO0384 | 0.48 | -2.1 | |
399,889 | + | SO0384 | 0.52 | +0.6 | |
399,930 | - | SO0384 | 0.58 | -1.5 | |
399,930 | - | SO0384 | 0.58 | -0.4 | |
399,930 | - | SO0384 | 0.58 | +0.4 | |
399,938 | + | SO0384 | 0.60 | +0.0 | |
399,938 | + | SO0384 | 0.60 | -0.8 | |
399,985 | + | SO0384 | 0.67 | +0.2 | |
399,985 | + | SO0384 | 0.67 | -0.2 | |
399,993 | - | SO0384 | 0.68 | +1.4 | |
399,993 | - | SO0384 | 0.68 | -0.5 | |
400,003 | - | SO0384 | 0.70 | +0.0 | |
400,044 | + | SO0384 | 0.76 | +0.6 | |
400,044 | + | SO0384 | 0.76 | +0.6 | |
400,044 | + | SO0384 | 0.76 | +1.5 | |
400,044 | + | SO0384 | 0.76 | +0.0 |
Or see this region's nucleotide sequence