Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08700

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08680 and PGA1_c08690 are separated by 234 nucleotidesPGA1_c08690 and PGA1_c08700 are separated by 74 nucleotidesPGA1_c08700 and PGA1_c08710 are separated by 3 nucleotidesPGA1_c08710 and PGA1_c08720 overlap by 4 nucleotides PGA1_c08680: PGA1_c08680 - pirin-like protein, at 895,115 to 896,026 _c08680 PGA1_c08690: PGA1_c08690 - hypothetical protein, at 896,261 to 896,776 _c08690 PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450 _c08700 PGA1_c08710: PGA1_c08710 - TadE-like protein., at 897,454 to 898,014 _c08710 PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693 _c08720 Position (kb) 896 897 898Strain fitness (log2 ratio) -2 -1 0 1at 896.034 kb on - strandat 896.053 kb on - strandat 896.144 kb on + strandat 896.152 kb on - strandat 896.171 kb on + strandat 896.179 kb on - strandat 896.201 kb on - strandat 896.211 kb on - strandat 896.213 kb on + strandat 896.213 kb on + strandat 896.213 kb on + strandat 896.226 kb on + strandat 896.258 kb on - strandat 896.279 kb on - strandat 896.279 kb on - strandat 896.319 kb on - strand, within PGA1_c08690at 896.382 kb on + strand, within PGA1_c08690at 896.395 kb on - strand, within PGA1_c08690at 896.518 kb on - strand, within PGA1_c08690at 896.620 kb on + strand, within PGA1_c08690at 896.622 kb on + strand, within PGA1_c08690at 896.626 kb on - strand, within PGA1_c08690at 896.628 kb on - strand, within PGA1_c08690at 896.715 kb on - strand, within PGA1_c08690at 896.749 kb on + strandat 896.749 kb on + strandat 896.749 kb on + strandat 896.757 kb on - strandat 896.757 kb on - strandat 896.770 kb on + strandat 896.814 kb on - strandat 896.848 kb on + strandat 896.848 kb on + strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.856 kb on - strandat 896.882 kb on - strandat 896.891 kb on + strandat 896.891 kb on + strandat 896.959 kb on + strand, within PGA1_c08700at 896.981 kb on - strand, within PGA1_c08700at 896.986 kb on - strand, within PGA1_c08700at 897.064 kb on - strand, within PGA1_c08700at 897.066 kb on + strand, within PGA1_c08700at 897.094 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.111 kb on + strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.119 kb on - strand, within PGA1_c08700at 897.128 kb on - strand, within PGA1_c08700at 897.152 kb on - strand, within PGA1_c08700at 897.246 kb on + strand, within PGA1_c08700at 897.246 kb on + strand, within PGA1_c08700at 897.270 kb on + strand, within PGA1_c08700at 897.278 kb on - strand, within PGA1_c08700at 897.280 kb on + strand, within PGA1_c08700at 897.280 kb on + strand, within PGA1_c08700at 897.394 kb on - strandat 897.419 kb on + strandat 897.427 kb on - strandat 897.475 kb on + strandat 897.631 kb on - strand, within PGA1_c08710at 897.640 kb on - strand, within PGA1_c08710at 897.641 kb on - strand, within PGA1_c08710at 897.660 kb on - strand, within PGA1_c08710at 897.694 kb on - strand, within PGA1_c08710at 897.694 kb on - strand, within PGA1_c08710at 897.733 kb on + strand, within PGA1_c08710at 897.741 kb on - strand, within PGA1_c08710at 897.741 kb on - strand, within PGA1_c08710at 897.818 kb on + strand, within PGA1_c08710at 897.818 kb on + strand, within PGA1_c08710at 897.818 kb on + strand, within PGA1_c08710at 897.868 kb on - strand, within PGA1_c08710at 897.870 kb on + strand, within PGA1_c08710at 897.870 kb on + strand, within PGA1_c08710at 897.878 kb on + strand, within PGA1_c08710at 897.878 kb on + strand, within PGA1_c08710at 897.878 kb on - strand, within PGA1_c08710at 897.886 kb on - strand, within PGA1_c08710at 897.886 kb on - strand, within PGA1_c08710at 897.901 kb on + strand, within PGA1_c08710at 897.950 kb on - strand, within PGA1_c08710at 897.968 kb on - strandat 898.070 kb on + strandat 898.078 kb on - strandat 898.078 kb on - strandat 898.119 kb on - strandat 898.127 kb on - strandat 898.149 kb on + strandat 898.161 kb on + strandat 898.192 kb on + strand, within PGA1_c08720at 898.220 kb on + strand, within PGA1_c08720at 898.259 kb on + strand, within PGA1_c08720at 898.297 kb on + strand, within PGA1_c08720at 898.297 kb on + strand, within PGA1_c08720at 898.297 kb on + strand, within PGA1_c08720at 898.305 kb on - strand, within PGA1_c08720at 898.305 kb on - strand, within PGA1_c08720at 898.305 kb on - strand, within PGA1_c08720at 898.361 kb on - strand, within PGA1_c08720at 898.361 kb on - strand, within PGA1_c08720at 898.361 kb on - strand, within PGA1_c08720at 898.361 kb on - strand, within PGA1_c08720at 898.388 kb on + strand, within PGA1_c08720at 898.429 kb on - strand, within PGA1_c08720at 898.431 kb on + strand, within PGA1_c08720at 898.438 kb on + strand, within PGA1_c08720

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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896,034 - -0.4
896,053 - -0.2
896,144 + -0.8
896,152 - -0.6
896,171 + -0.6
896,179 - -0.1
896,201 - +0.6
896,211 - +0.5
896,213 + +0.1
896,213 + +0.6
896,213 + -2.1
896,226 + -1.6
896,258 - -0.4
896,279 - -0.7
896,279 - +0.1
896,319 - PGA1_c08690 0.11 +0.6
896,382 + PGA1_c08690 0.23 -1.5
896,395 - PGA1_c08690 0.26 -0.6
896,518 - PGA1_c08690 0.50 +0.8
896,620 + PGA1_c08690 0.70 -0.5
896,622 + PGA1_c08690 0.70 +0.1
896,626 - PGA1_c08690 0.71 -0.8
896,628 - PGA1_c08690 0.71 -1.2
896,715 - PGA1_c08690 0.88 +1.2
896,749 + +0.7
896,749 + -0.5
896,749 + +0.6
896,757 - -0.2
896,757 - -0.0
896,770 + -1.6
896,814 - -0.1
896,848 + +0.7
896,848 + -1.2
896,856 - +0.9
896,856 - -0.3
896,856 - -0.6
896,856 - -0.7
896,882 - +1.0
896,891 + -0.2
896,891 + -0.2
896,959 + PGA1_c08700 0.18 -0.2
896,981 - PGA1_c08700 0.22 +0.7
896,986 - PGA1_c08700 0.23 -0.0
897,064 - PGA1_c08700 0.35 +0.3
897,066 + PGA1_c08700 0.36 +0.2
897,094 + PGA1_c08700 0.41 +1.1
897,111 + PGA1_c08700 0.43 -0.6
897,111 + PGA1_c08700 0.43 -0.6
897,111 + PGA1_c08700 0.43 -1.5
897,111 + PGA1_c08700 0.43 -0.5
897,111 + PGA1_c08700 0.43 -1.3
897,119 - PGA1_c08700 0.45 -0.8
897,119 - PGA1_c08700 0.45 -1.2
897,119 - PGA1_c08700 0.45 -1.8
897,119 - PGA1_c08700 0.45 -0.4
897,119 - PGA1_c08700 0.45 -1.1
897,119 - PGA1_c08700 0.45 +0.9
897,119 - PGA1_c08700 0.45 -0.5
897,128 - PGA1_c08700 0.46 +0.0
897,152 - PGA1_c08700 0.50 -0.6
897,246 + PGA1_c08700 0.66 +0.9
897,246 + PGA1_c08700 0.66 -0.9
897,270 + PGA1_c08700 0.70 -0.1
897,278 - PGA1_c08700 0.71 -0.2
897,280 + PGA1_c08700 0.71 -1.2
897,280 + PGA1_c08700 0.71 +0.2
897,394 - +0.3
897,419 + +0.5
897,427 - -0.9
897,475 + -0.3
897,631 - PGA1_c08710 0.32 -2.2
897,640 - PGA1_c08710 0.33 +0.6
897,641 - PGA1_c08710 0.33 +0.2
897,660 - PGA1_c08710 0.37 +0.0
897,694 - PGA1_c08710 0.43 -0.4
897,694 - PGA1_c08710 0.43 -0.7
897,733 + PGA1_c08710 0.50 -2.2
897,741 - PGA1_c08710 0.51 +0.0
897,741 - PGA1_c08710 0.51 +0.2
897,818 + PGA1_c08710 0.65 -0.2
897,818 + PGA1_c08710 0.65 +0.2
897,818 + PGA1_c08710 0.65 -0.1
897,868 - PGA1_c08710 0.74 -0.3
897,870 + PGA1_c08710 0.74 +0.4
897,870 + PGA1_c08710 0.74 -0.2
897,878 + PGA1_c08710 0.76 -0.5
897,878 + PGA1_c08710 0.76 -0.5
897,878 - PGA1_c08710 0.76 -0.5
897,886 - PGA1_c08710 0.77 +0.2
897,886 - PGA1_c08710 0.77 +0.1
897,901 + PGA1_c08710 0.80 -0.7
897,950 - PGA1_c08710 0.88 -1.1
897,968 - +0.1
898,070 + -0.1
898,078 - -0.3
898,078 - +0.1
898,119 - +0.0
898,127 - +0.7
898,149 + -0.4
898,161 + +0.2
898,192 + PGA1_c08720 0.11 +0.0
898,220 + PGA1_c08720 0.12 -0.4
898,259 + PGA1_c08720 0.15 -0.3
898,297 + PGA1_c08720 0.17 +0.0
898,297 + PGA1_c08720 0.17 +0.5
898,297 + PGA1_c08720 0.17 +1.0
898,305 - PGA1_c08720 0.17 -1.1
898,305 - PGA1_c08720 0.17 +0.3
898,305 - PGA1_c08720 0.17 -0.0
898,361 - PGA1_c08720 0.21 -0.9
898,361 - PGA1_c08720 0.21 +0.5
898,361 - PGA1_c08720 0.21 -0.1
898,361 - PGA1_c08720 0.21 +0.6
898,388 + PGA1_c08720 0.22 -0.3
898,429 - PGA1_c08720 0.25 -0.0
898,431 + PGA1_c08720 0.25 -0.0
898,438 + PGA1_c08720 0.25 -0.4

Or see this region's nucleotide sequence