Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35440

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,715,925	-				-0.0
3,715,956	-				+0.1
3,715,967	+				+0.2
3,715,994	-				-1.3
3,716,003	+				+0.4
3,716,011	-				+1.1
3,716,016	-				+0.2
3,716,051	+		PGA1_c35430	0.12	-0.7
3,716,059	+		PGA1_c35430	0.13	+1.4
3,716,117	+		PGA1_c35430	0.22	+0.8
3,716,120	-		PGA1_c35430	0.23	-0.4
3,716,138	+		PGA1_c35430	0.25	-1.3
3,716,248	-		PGA1_c35430	0.42	+0.5
3,716,251	+		PGA1_c35430	0.42	+0.2
3,716,259	-		PGA1_c35430	0.44	+0.4
3,716,259	-		PGA1_c35430	0.44	-1.6
3,716,266	+		PGA1_c35430	0.45	+0.2
3,716,274	-		PGA1_c35430	0.46	-0.9
3,716,283	+		PGA1_c35430	0.47	+0.4
3,716,306	+		PGA1_c35430	0.51	-0.0
3,716,330	+		PGA1_c35430	0.54	-2.1
3,716,468	+		PGA1_c35430	0.75	-1.3
3,716,476	+		PGA1_c35430	0.77	-1.0
3,716,476	-		PGA1_c35430	0.77	+0.4
3,716,522	+		PGA1_c35430	0.83	-1.1
3,716,525	-		PGA1_c35430	0.84	-0.1
3,716,530	-		PGA1_c35430	0.85	-0.6
3,716,550	-		PGA1_c35430	0.88	-1.9
3,716,557	+		PGA1_c35430	0.89	-0.9
3,716,563	-		PGA1_c35430	0.90	-1.0
3,716,565	-				+0.9
3,716,580	+				+0.4
3,716,580	+				+0.3
3,716,580	+				-2.4
3,716,588	-				+0.0
3,716,593	-				-2.7
3,716,631	-				+0.3
3,716,666	+				+0.1
3,716,681	+				-0.2
3,716,686	+				+0.3
3,716,689	-				-0.6
3,716,689	-				-0.2
3,716,697	-				-1.4
3,716,719	+				-0.7
3,716,719	+				-0.1
3,716,719	+				-0.6
3,716,725	+				-0.3
3,716,726	+				+0.7
3,716,726	+				-1.2
3,716,726	+				+0.5
3,716,726	+				-0.3
3,716,727	-				+0.3
3,716,727	-				-0.8
3,716,727	-				+1.3
3,716,733	-				+0.6
3,716,733	-				+0.6
3,716,733	-				+0.1
3,716,734	-				-1.0
3,716,775	+				+0.3
3,716,780	+				+0.2
3,716,783	+				+1.0
3,716,785	+				-1.0
3,716,785	+				+0.4
3,716,785	+				+0.3
3,716,785	+				+0.3
3,716,788	-				-1.3
3,716,793	-				+0.8
3,716,793	-				-1.5
3,716,793	-				-0.1
3,716,793	-				+0.7
3,716,793	-				-1.2
3,716,793	-				+0.1
3,716,793	-				+0.5
3,716,804	-				-0.6
3,716,827	+				-0.1
3,716,836	-				-0.1
3,716,846	-				+0.0
3,716,859	+				+1.4
3,716,859	+				-0.1
3,716,859	+				+1.3
3,716,952	-		PGA1_c35440	0.21	+0.6
3,716,970	+		PGA1_c35440	0.26	-0.7
3,716,970	+		PGA1_c35440	0.26	-1.1
3,716,978	-		PGA1_c35440	0.28	-0.8
3,716,978	-		PGA1_c35440	0.28	+0.1
3,716,989	-		PGA1_c35440	0.32	-0.1
3,717,085	+		PGA1_c35440	0.60	-0.7
3,717,085	+		PGA1_c35440	0.60	-1.3
3,717,085	-		PGA1_c35440	0.60	+0.1
3,717,095	+		PGA1_c35440	0.63	+0.1
3,717,096	+		PGA1_c35440	0.63	+1.5
3,717,100	+		PGA1_c35440	0.64	-1.0
3,717,103	-		PGA1_c35440	0.65	+0.3
3,717,103	-		PGA1_c35440	0.65	-1.4
3,717,108	-		PGA1_c35440	0.66	-0.8
3,717,112	+		PGA1_c35440	0.68	-0.3
3,717,176	+		PGA1_c35440	0.86	-0.5
3,717,176	+		PGA1_c35440	0.86	-0.1
3,717,176	+		PGA1_c35440	0.86	-0.7
3,717,176	+		PGA1_c35440	0.86	-0.4
3,717,176	+		PGA1_c35440	0.86	+0.5
3,717,176	+		PGA1_c35440	0.86	-0.4
3,717,176	+		PGA1_c35440	0.86	-1.9
3,717,176	+		PGA1_c35440	0.86	-2.6
3,717,176	+		PGA1_c35440	0.86	+0.1
3,717,176	+		PGA1_c35440	0.86	-0.5
3,717,184	-		PGA1_c35440	0.89	+0.7
3,717,184	-		PGA1_c35440	0.89	+0.1
3,717,184	-		PGA1_c35440	0.89	-0.9
3,717,184	-		PGA1_c35440	0.89	-0.9
3,717,184	-		PGA1_c35440	0.89	-1.1
3,717,195	-				-0.5
3,717,234	-				-0.2
3,717,313	+				+0.4
3,717,326	-				+0.9
3,717,345	+				+0.0
3,717,364	+				+0.3
3,717,364	+				+1.0
3,717,364	+				+0.6
3,717,364	+				+0.1
3,717,364	+				+0.0
3,717,372	-				+0.2
3,717,372	-				+0.7
3,717,372	-				-0.1
3,717,374	+				-1.0
3,717,376	+				-0.1
3,717,382	-				+0.6
3,717,510	-				-0.7
3,717,541	-				-0.3
3,717,564	-				+0.5
3,717,571	+				+0.5
3,717,571	+				-1.3
3,717,571	+				+0.7
3,717,571	+				-0.4
3,717,571	+				-0.2
3,717,571	+				+0.1
3,717,577	-				+0.9
3,717,579	-				+0.2
3,717,579	-				-0.4
3,717,579	-				+0.7
3,717,579	-				-0.2
3,717,579	-				-0.6
3,717,595	-				-0.2
3,717,609	+				+0.3
3,717,617	-		PGA1_c35450	0.11	-0.4
3,717,653	+		PGA1_c35450	0.20	-0.0
3,717,661	+		PGA1_c35450	0.22	-0.4
3,717,661	+		PGA1_c35450	0.22	-0.4
3,717,661	+		PGA1_c35450	0.22	-0.1
3,717,661	+		PGA1_c35450	0.22	+0.5
3,717,661	+		PGA1_c35450	0.22	+0.5
3,717,661	+		PGA1_c35450	0.22	+0.2
3,717,661	+		PGA1_c35450	0.22	+0.3
3,717,661	+		PGA1_c35450	0.22	+0.4
3,717,661	+		PGA1_c35450	0.22	-0.3
3,717,661	+		PGA1_c35450	0.22	+0.0
3,717,669	-		PGA1_c35450	0.24	+0.7
3,717,669	-		PGA1_c35450	0.24	+0.8
3,717,669	-		PGA1_c35450	0.24	+0.3
3,717,669	-		PGA1_c35450	0.24	+0.1
3,717,669	-		PGA1_c35450	0.24	+0.5
3,717,669	-		PGA1_c35450	0.24	-0.3
3,717,669	-		PGA1_c35450	0.24	-0.8
3,717,669	-		PGA1_c35450	0.24	-0.3
3,717,669	-		PGA1_c35450	0.24	-1.1
3,717,669	-		PGA1_c35450	0.24	+1.4
3,717,669	-		PGA1_c35450	0.24	+0.9
3,717,669	-		PGA1_c35450	0.24	+0.7
3,717,669	-		PGA1_c35450	0.24	+0.2
3,717,669	-		PGA1_c35450	0.24	-0.5
3,717,669	-		PGA1_c35450	0.24	+0.6
3,717,669	-		PGA1_c35450	0.24	-1.1
3,717,669	-		PGA1_c35450	0.24	+0.1
3,717,669	-		PGA1_c35450	0.24	-0.9
3,717,718	+		PGA1_c35450	0.37	-0.1
3,717,718	+		PGA1_c35450	0.37	-0.2
3,717,718	+		PGA1_c35450	0.37	+0.2
3,717,719	-		PGA1_c35450	0.37	+0.7
3,717,723	+		PGA1_c35450	0.38	-0.0
3,717,726	-		PGA1_c35450	0.39	+0.1
3,717,726	-		PGA1_c35450	0.39	-1.4
3,717,726	-		PGA1_c35450	0.39	+0.8
3,717,726	-		PGA1_c35450	0.39	+1.2
3,717,726	-		PGA1_c35450	0.39	-0.6
3,717,726	-		PGA1_c35450	0.39	+0.3
3,717,726	-		PGA1_c35450	0.39	+0.3
3,717,726	-		PGA1_c35450	0.39	-0.5
3,717,726	-		PGA1_c35450	0.39	+1.7
3,717,731	-		PGA1_c35450	0.40	-0.9
3,717,736	-		PGA1_c35450	0.41	-0.5
3,717,767	-		PGA1_c35450	0.49	+0.4
3,717,774	-		PGA1_c35450	0.51	-1.3
3,717,808	-		PGA1_c35450	0.59	-0.7
3,717,829	-		PGA1_c35450	0.65	-0.8
3,717,829	-		PGA1_c35450	0.65	-0.2
3,717,829	-		PGA1_c35450	0.65	-0.1
3,717,838	+		PGA1_c35450	0.67	-0.6
3,717,839	-		PGA1_c35450	0.67	+0.3
3,717,845	-		PGA1_c35450	0.69	-0.3
3,717,845	-		PGA1_c35450	0.69	+0.8
3,717,882	+		PGA1_c35450	0.78	+0.7
3,717,890	-		PGA1_c35450	0.80	-1.1
3,717,902	+		PGA1_c35450	0.83	+0.1
3,717,902	+		PGA1_c35450	0.83	+0.1
3,717,902	+		PGA1_c35450	0.83	+0.3
3,717,902	+		PGA1_c35450	0.83	-0.1
3,717,902	+		PGA1_c35450	0.83	+0.4
3,717,902	+		PGA1_c35450	0.83	-2.2
3,717,910	-		PGA1_c35450	0.85	-0.0
3,717,910	-		PGA1_c35450	0.85	+0.3
3,717,910	-		PGA1_c35450	0.85	+1.3
3,717,910	-		PGA1_c35450	0.85	+0.5
3,717,910	-		PGA1_c35450	0.85	-0.6
3,717,978	+				+0.4
3,718,026	+				-0.1
3,718,026	+				+0.3
3,718,065	+		PGA1_c35460	0.12	+0.2
3,718,073	-		PGA1_c35460	0.14	+0.2
3,718,075	+		PGA1_c35460	0.15	-0.6
3,718,083	-		PGA1_c35460	0.17	-0.9
3,718,112	-		PGA1_c35460	0.23	-0.8
3,718,128	+		PGA1_c35460	0.27	-0.9
3,718,128	+		PGA1_c35460	0.27	+0.2
3,718,128	+		PGA1_c35460	0.27	-2.5
3,718,128	+		PGA1_c35460	0.27	-0.1
3,718,128	+		PGA1_c35460	0.27	+0.1
3,718,128	+		PGA1_c35460	0.27	-0.6
3,718,128	+		PGA1_c35460	0.27	-1.3
3,718,128	+		PGA1_c35460	0.27	-0.4
3,718,128	+		PGA1_c35460	0.27	+0.3
3,718,128	+		PGA1_c35460	0.27	-1.0
3,718,128	+		PGA1_c35460	0.27	-0.7
3,718,128	+		PGA1_c35460	0.27	-0.8
3,718,128	+		PGA1_c35460	0.27	-0.2
3,718,128	+		PGA1_c35460	0.27	+0.7
3,718,128	+		PGA1_c35460	0.27	+0.7
3,718,136	-		PGA1_c35460	0.29	+0.7
3,718,136	-		PGA1_c35460	0.29	-0.3
3,718,136	-		PGA1_c35460	0.29	-0.9
3,718,136	-		PGA1_c35460	0.29	-0.4
3,718,136	-		PGA1_c35460	0.29	-1.4
3,718,136	-		PGA1_c35460	0.29	+1.2
3,718,136	-		PGA1_c35460	0.29	-0.0
3,718,136	-		PGA1_c35460	0.29	-0.5
3,718,136	-		PGA1_c35460	0.29	+0.3
3,718,136	-		PGA1_c35460	0.29	-0.0
3,718,136	-		PGA1_c35460	0.29	-0.3
3,718,136	-		PGA1_c35460	0.29	-0.4
3,718,136	-		PGA1_c35460	0.29	+0.2
3,718,138	+		PGA1_c35460	0.30	-0.7
3,718,138	+		PGA1_c35460	0.30	-0.6
3,718,138	+		PGA1_c35460	0.30	+0.2
3,718,156	+		PGA1_c35460	0.34	-0.6
3,718,156	+		PGA1_c35460	0.34	+1.6
3,718,166	-		PGA1_c35460	0.36	+0.5
3,718,173	+		PGA1_c35460	0.38	-0.7
3,718,207	+		PGA1_c35460	0.46	-0.8
3,718,217	+		PGA1_c35460	0.48	-0.6
3,718,217	+		PGA1_c35460	0.48	-0.5
3,718,220	-		PGA1_c35460	0.49	-1.6