Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3228 and HP15_3229 are separated by 115 nucleotides HP15_3229 and HP15_3230 overlap by 4 nucleotides HP15_3230 and HP15_3231 overlap by 8 nucleotides
HP15_3228: HP15_3228 - phosphoribosylamine-glycine ligase, at 3,380,803 to 3,382,089
_3228
HP15_3229: HP15_3229 - abhydrolase domain-containing protein 6, at 3,382,205 to 3,383,143
_3229
HP15_3230: HP15_3230 - hypothetical protein, at 3,383,140 to 3,383,259
_3230
HP15_3231: HP15_3231 - sodium/hydrogen exchanger, at 3,383,252 to 3,384,826
_3231
Position (kb)
3382
3383
3384 Strain fitness (log2 ratio)
-1
0
1 at 3382.083 kb on + strand at 3382.083 kb on + strand at 3382.091 kb on - strand at 3382.269 kb on + strand at 3382.274 kb on + strand at 3382.297 kb on + strand at 3382.310 kb on - strand, within HP15_3229 at 3382.614 kb on - strand, within HP15_3229 at 3382.755 kb on - strand, within HP15_3229 at 3382.977 kb on - strand, within HP15_3229 at 3383.067 kb on - strand at 3383.073 kb on + strand at 3383.134 kb on + strand at 3383.203 kb on - strand, within HP15_3230 at 3383.205 kb on + strand, within HP15_3230 at 3383.208 kb on - strand, within HP15_3230 at 3383.274 kb on + strand at 3383.403 kb on + strand at 3383.405 kb on + strand at 3383.405 kb on + strand at 3383.430 kb on - strand, within HP15_3231 at 3383.492 kb on - strand, within HP15_3231 at 3383.515 kb on + strand, within HP15_3231 at 3383.519 kb on + strand, within HP15_3231 at 3383.712 kb on - strand, within HP15_3231 at 3383.798 kb on + strand, within HP15_3231
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 3,382,083 + -0.4 3,382,083 + +0.7 3,382,091 - +0.0 3,382,269 + +0.2 3,382,274 + +0.1 3,382,297 + +0.1 3,382,310 - HP15_3229 0.11 -0.1 3,382,614 - HP15_3229 0.44 -0.1 3,382,755 - HP15_3229 0.59 +0.2 3,382,977 - HP15_3229 0.82 +0.4 3,383,067 - -0.2 3,383,073 + +0.1 3,383,134 + -0.3 3,383,203 - HP15_3230 0.53 +0.2 3,383,205 + HP15_3230 0.54 +0.1 3,383,208 - HP15_3230 0.57 -0.3 3,383,274 + -0.4 3,383,403 + -0.1 3,383,405 + +0.1 3,383,405 + +0.2 3,383,430 - HP15_3231 0.11 +0.0 3,383,492 - HP15_3231 0.15 -0.0 3,383,515 + HP15_3231 0.17 +0.5 3,383,519 + HP15_3231 0.17 +0.1 3,383,712 - HP15_3231 0.29 -0.6 3,383,798 + HP15_3231 0.35 -0.2
Or see this region's nucleotide sequence