Strain Fitness in Marinobacter adhaerens HP15 around HP15_2551

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2549 and HP15_2550 are separated by 23 nucleotidesHP15_2550 and HP15_2551 are separated by 1 nucleotidesHP15_2551 and HP15_2552 are separated by 3 nucleotidesHP15_2552 and HP15_2553 overlap by 1 nucleotides HP15_2549: HP15_2549 - adenine phosphoribosyltransferase, at 2,695,831 to 2,696,373 _2549 HP15_2550: HP15_2550 - fumarylacetoacetate hydrolase family protein, at 2,696,397 to 2,697,059 _2550 HP15_2551: HP15_2551 - ABC-1 domain protein, at 2,697,061 to 2,698,416 _2551 HP15_2552: HP15_2552 - silent information regulator protein Sir2, at 2,698,420 to 2,699,097 _2552 HP15_2553: HP15_2553 - oxidoreductase, FAD-binding protein, at 2,699,097 to 2,700,536 _2553 Position (kb) 2697 2698 2699Strain fitness (log2 ratio) -2 -1 0 1at 2696.076 kb on - strand, within HP15_2549at 2696.152 kb on - strand, within HP15_2549at 2696.348 kb on - strandat 2696.348 kb on - strandat 2696.499 kb on - strand, within HP15_2550at 2696.499 kb on - strand, within HP15_2550at 2696.640 kb on + strand, within HP15_2550at 2696.684 kb on + strand, within HP15_2550at 2696.769 kb on - strand, within HP15_2550at 2697.128 kb on + strandat 2697.129 kb on + strandat 2697.278 kb on + strand, within HP15_2551at 2697.537 kb on - strand, within HP15_2551at 2697.755 kb on - strand, within HP15_2551at 2697.828 kb on + strand, within HP15_2551at 2697.852 kb on + strand, within HP15_2551at 2697.852 kb on + strand, within HP15_2551at 2697.927 kb on + strand, within HP15_2551at 2698.063 kb on + strand, within HP15_2551at 2698.077 kb on - strand, within HP15_2551at 2698.126 kb on - strand, within HP15_2551at 2698.216 kb on + strand, within HP15_2551at 2698.216 kb on + strand, within HP15_2551at 2698.224 kb on - strand, within HP15_2551at 2698.305 kb on + strandat 2698.362 kb on + strandat 2698.483 kb on - strandat 2698.509 kb on + strand, within HP15_2552at 2698.517 kb on - strand, within HP15_2552at 2698.532 kb on + strand, within HP15_2552at 2698.628 kb on + strand, within HP15_2552at 2698.636 kb on - strand, within HP15_2552at 2698.934 kb on + strand, within HP15_2552at 2698.942 kb on - strand, within HP15_2552at 2699.010 kb on - strand, within HP15_2552at 2699.010 kb on - strand, within HP15_2552at 2699.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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2,696,076 - HP15_2549 0.45 +0.2
2,696,152 - HP15_2549 0.59 -0.2
2,696,348 - -0.1
2,696,348 - +0.5
2,696,499 - HP15_2550 0.15 +0.2
2,696,499 - HP15_2550 0.15 -0.1
2,696,640 + HP15_2550 0.37 +0.3
2,696,684 + HP15_2550 0.43 -0.2
2,696,769 - HP15_2550 0.56 -0.9
2,697,128 + +1.1
2,697,129 + +0.0
2,697,278 + HP15_2551 0.16 +0.2
2,697,537 - HP15_2551 0.35 -0.3
2,697,755 - HP15_2551 0.51 -1.1
2,697,828 + HP15_2551 0.57 +0.1
2,697,852 + HP15_2551 0.58 -0.0
2,697,852 + HP15_2551 0.58 -0.2
2,697,927 + HP15_2551 0.64 -0.2
2,698,063 + HP15_2551 0.74 -0.7
2,698,077 - HP15_2551 0.75 -0.5
2,698,126 - HP15_2551 0.79 -0.1
2,698,216 + HP15_2551 0.85 -0.3
2,698,216 + HP15_2551 0.85 -1.8
2,698,224 - HP15_2551 0.86 -0.4
2,698,305 + +0.6
2,698,362 + -0.1
2,698,483 - +0.3
2,698,509 + HP15_2552 0.13 +0.1
2,698,517 - HP15_2552 0.14 +0.4
2,698,532 + HP15_2552 0.17 +0.3
2,698,628 + HP15_2552 0.31 -0.3
2,698,636 - HP15_2552 0.32 +0.3
2,698,934 + HP15_2552 0.76 -0.6
2,698,942 - HP15_2552 0.77 -0.4
2,699,010 - HP15_2552 0.87 +0.1
2,699,010 - HP15_2552 0.87 +1.3
2,699,035 + -0.3

Or see this region's nucleotide sequence