Strain Fitness in Marinobacter adhaerens HP15 around HP15_203

Experiment: m.b. Nickel (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_201 and HP15_202 overlap by 4 nucleotidesHP15_202 and HP15_203 are separated by 4 nucleotidesHP15_203 and HP15_204 overlap by 4 nucleotides HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599 _201 HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528 _202 HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531 _203 HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538 _204 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1at 189.556 kb on + strandat 189.568 kb on - strandat 189.571 kb on - strandat 189.766 kb on + strand, within HP15_202at 189.774 kb on - strand, within HP15_202at 189.774 kb on - strand, within HP15_202at 189.859 kb on + strand, within HP15_202at 189.984 kb on - strand, within HP15_202at 190.057 kb on + strand, within HP15_202at 190.057 kb on + strand, within HP15_202at 190.065 kb on - strand, within HP15_202at 190.065 kb on - strand, within HP15_202at 190.138 kb on + strand, within HP15_202at 190.157 kb on + strand, within HP15_202at 190.300 kb on - strand, within HP15_202at 190.375 kb on - strand, within HP15_202at 190.421 kb on - strand, within HP15_202at 190.506 kb on + strandat 190.506 kb on + strandat 190.523 kb on + strandat 190.524 kb on - strandat 190.531 kb on + strandat 190.531 kb on - strandat 190.539 kb on - strandat 190.582 kb on + strandat 190.622 kb on + strandat 190.622 kb on + strandat 190.630 kb on - strandat 190.653 kb on - strand, within HP15_203at 190.746 kb on + strand, within HP15_203at 190.771 kb on + strand, within HP15_203at 190.792 kb on + strand, within HP15_203at 190.845 kb on + strand, within HP15_203at 190.853 kb on - strand, within HP15_203at 190.886 kb on - strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.923 kb on + strand, within HP15_203at 190.931 kb on - strand, within HP15_203at 190.931 kb on - strand, within HP15_203at 190.967 kb on - strand, within HP15_203at 190.992 kb on - strand, within HP15_203at 190.994 kb on + strand, within HP15_203at 190.994 kb on + strand, within HP15_203at 191.164 kb on + strand, within HP15_203at 191.273 kb on + strand, within HP15_203at 191.273 kb on + strand, within HP15_203at 191.273 kb on + strand, within HP15_203at 191.275 kb on + strand, within HP15_203at 191.281 kb on - strand, within HP15_203at 191.281 kb on - strand, within HP15_203at 191.299 kb on - strand, within HP15_203at 191.308 kb on + strand, within HP15_203at 191.311 kb on - strand, within HP15_203at 191.418 kb on - strand, within HP15_203at 191.532 kb on + strandat 191.543 kb on - strandat 191.604 kb on + strandat 191.604 kb on + strandat 191.689 kb on - strand, within HP15_204at 191.690 kb on - strand, within HP15_204at 191.695 kb on - strand, within HP15_204at 191.804 kb on - strand, within HP15_204at 191.809 kb on + strand, within HP15_204at 191.851 kb on - strand, within HP15_204at 191.879 kb on - strand, within HP15_204at 191.897 kb on - strand, within HP15_204at 191.901 kb on + strand, within HP15_204at 191.909 kb on - strand, within HP15_204at 191.953 kb on - strand, within HP15_204at 191.993 kb on + strand, within HP15_204at 191.993 kb on + strand, within HP15_204at 191.998 kb on + strand, within HP15_204at 192.001 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.067 kb on - strand, within HP15_204at 192.140 kb on - strand, within HP15_204at 192.250 kb on - strand, within HP15_204at 192.325 kb on + strand, within HP15_204at 192.362 kb on + strand, within HP15_204at 192.370 kb on - strand, within HP15_204

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM
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189,556 + -0.4
189,568 - +0.2
189,571 - -0.7
189,766 + HP15_202 0.18 -0.7
189,774 - HP15_202 0.19 -1.4
189,774 - HP15_202 0.19 -0.8
189,859 + HP15_202 0.28 -0.8
189,984 - HP15_202 0.42 -0.6
190,057 + HP15_202 0.49 -0.4
190,057 + HP15_202 0.49 -0.8
190,065 - HP15_202 0.50 -0.1
190,065 - HP15_202 0.50 -0.7
190,138 + HP15_202 0.58 -1.2
190,157 + HP15_202 0.60 -0.6
190,300 - HP15_202 0.75 -0.7
190,375 - HP15_202 0.83 -0.6
190,421 - HP15_202 0.88 -0.6
190,506 + -0.2
190,506 + -0.6
190,523 + -0.1
190,524 - -0.2
190,531 + -0.2
190,531 - -0.5
190,539 - -0.2
190,582 + -0.4
190,622 + -0.5
190,622 + +0.6
190,630 - -0.8
190,653 - HP15_203 0.12 -0.1
190,746 + HP15_203 0.21 -0.7
190,771 + HP15_203 0.24 -0.4
190,792 + HP15_203 0.26 +1.3
190,845 + HP15_203 0.31 -1.8
190,853 - HP15_203 0.32 -0.6
190,886 - HP15_203 0.35 -0.6
190,923 + HP15_203 0.39 +0.3
190,923 + HP15_203 0.39 -0.4
190,923 + HP15_203 0.39 -0.1
190,923 + HP15_203 0.39 -0.2
190,931 - HP15_203 0.40 +0.1
190,931 - HP15_203 0.40 -0.6
190,967 - HP15_203 0.43 -0.4
190,992 - HP15_203 0.46 -0.1
190,994 + HP15_203 0.46 -1.0
190,994 + HP15_203 0.46 -0.6
191,164 + HP15_203 0.63 +0.1
191,273 + HP15_203 0.74 -0.9
191,273 + HP15_203 0.74 -0.0
191,273 + HP15_203 0.74 -0.5
191,275 + HP15_203 0.74 -0.4
191,281 - HP15_203 0.75 -1.1
191,281 - HP15_203 0.75 -0.6
191,299 - HP15_203 0.77 -0.1
191,308 + HP15_203 0.78 -0.0
191,311 - HP15_203 0.78 -0.7
191,418 - HP15_203 0.89 -0.1
191,532 + -0.7
191,543 - -0.2
191,604 + -0.7
191,604 + -0.7
191,689 - HP15_204 0.16 -0.1
191,690 - HP15_204 0.16 +0.4
191,695 - HP15_204 0.17 -1.0
191,804 - HP15_204 0.27 -0.0
191,809 + HP15_204 0.28 -0.8
191,851 - HP15_204 0.32 -0.4
191,879 - HP15_204 0.35 -0.8
191,897 - HP15_204 0.36 -0.9
191,901 + HP15_204 0.37 -0.3
191,909 - HP15_204 0.38 +0.1
191,953 - HP15_204 0.42 -0.7
191,993 + HP15_204 0.46 -0.1
191,993 + HP15_204 0.46 -0.8
191,998 + HP15_204 0.46 -0.5
192,001 - HP15_204 0.47 -0.4
192,006 - HP15_204 0.47 -0.1
192,006 - HP15_204 0.47 -0.3
192,006 - HP15_204 0.47 -0.3
192,067 - HP15_204 0.53 -0.7
192,140 - HP15_204 0.61 -0.6
192,250 - HP15_204 0.71 -1.5
192,325 + HP15_204 0.79 -0.6
192,362 + HP15_204 0.82 +0.3
192,370 - HP15_204 0.83 -0.2

Or see this region's nucleotide sequence