Experiment: m.b. Nickel (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1557 and HP15_1558 are separated by 85 nucleotides HP15_1558 and HP15_1559 overlap by 4 nucleotides HP15_1559 and HP15_1560 are separated by 151 nucleotides
HP15_1557: HP15_1557 - acylphosphatase, at 1,638,128 to 1,638,403
_1557
HP15_1558: HP15_1558 - fructosamine kinase, at 1,638,489 to 1,639,262
_1558
HP15_1559: HP15_1559 - auxin efflux carrier, at 1,639,259 to 1,640,206
_1559
HP15_1560: HP15_1560 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein, at 1,640,358 to 1,642,691
_1560
Position (kb)
1639
1640
1641 Strain fitness (log2 ratio)
-1
0
1 at 1638.319 kb on - strand, within HP15_1557 at 1638.586 kb on + strand, within HP15_1558 at 1638.619 kb on + strand, within HP15_1558 at 1638.708 kb on - strand, within HP15_1558 at 1638.896 kb on - strand, within HP15_1558 at 1638.899 kb on + strand, within HP15_1558 at 1638.930 kb on - strand, within HP15_1558 at 1639.023 kb on + strand, within HP15_1558 at 1639.025 kb on + strand, within HP15_1558 at 1639.149 kb on - strand, within HP15_1558 at 1639.177 kb on + strand, within HP15_1558 at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.257 kb on + strand at 1639.265 kb on - strand at 1639.267 kb on + strand at 1639.291 kb on + strand at 1639.424 kb on - strand, within HP15_1559 at 1639.545 kb on + strand, within HP15_1559 at 1639.591 kb on + strand, within HP15_1559 at 1639.619 kb on + strand, within HP15_1559 at 1639.627 kb on - strand, within HP15_1559 at 1640.072 kb on - strand, within HP15_1559 at 1640.072 kb on - strand, within HP15_1559 at 1640.136 kb on - strand at 1640.212 kb on - strand at 1640.212 kb on - strand at 1640.254 kb on - strand at 1640.297 kb on + strand at 1640.304 kb on - strand at 1640.345 kb on + strand at 1640.481 kb on - strand at 1640.570 kb on + strand at 1640.670 kb on - strand, within HP15_1560 at 1640.762 kb on + strand, within HP15_1560 at 1640.763 kb on - strand, within HP15_1560 at 1640.795 kb on - strand, within HP15_1560 at 1641.015 kb on + strand, within HP15_1560 at 1641.015 kb on + strand, within HP15_1560 at 1641.015 kb on + strand, within HP15_1560 at 1641.023 kb on - strand, within HP15_1560 at 1641.042 kb on + strand, within HP15_1560 at 1641.042 kb on + strand, within HP15_1560 at 1641.050 kb on - strand, within HP15_1560 at 1641.124 kb on + strand, within HP15_1560 at 1641.125 kb on + strand, within HP15_1560 at 1641.159 kb on + strand, within HP15_1560
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1 mM remove 1,638,319 - HP15_1557 0.69 +0.1 1,638,586 + HP15_1558 0.13 +0.3 1,638,619 + HP15_1558 0.17 -0.0 1,638,708 - HP15_1558 0.28 -0.0 1,638,896 - HP15_1558 0.53 +0.5 1,638,899 + HP15_1558 0.53 -0.4 1,638,930 - HP15_1558 0.57 +0.4 1,639,023 + HP15_1558 0.69 +0.2 1,639,025 + HP15_1558 0.69 -0.3 1,639,149 - HP15_1558 0.85 -0.2 1,639,177 + HP15_1558 0.89 +0.8 1,639,257 + +0.6 1,639,257 + +0.4 1,639,257 + -0.2 1,639,257 + +0.0 1,639,257 + +0.2 1,639,265 - -0.4 1,639,267 + -0.6 1,639,291 + -0.1 1,639,424 - HP15_1559 0.17 -0.2 1,639,545 + HP15_1559 0.30 -0.8 1,639,591 + HP15_1559 0.35 -0.6 1,639,619 + HP15_1559 0.38 -0.3 1,639,627 - HP15_1559 0.39 -0.1 1,640,072 - HP15_1559 0.86 -0.9 1,640,072 - HP15_1559 0.86 -1.1 1,640,136 - -0.6 1,640,212 - +0.5 1,640,212 - -0.3 1,640,254 - +0.1 1,640,297 + -0.0 1,640,304 - -0.3 1,640,345 + +0.1 1,640,481 - -0.2 1,640,570 + -1.2 1,640,670 - HP15_1560 0.13 +0.2 1,640,762 + HP15_1560 0.17 +0.7 1,640,763 - HP15_1560 0.17 -0.1 1,640,795 - HP15_1560 0.19 +0.4 1,641,015 + HP15_1560 0.28 +0.3 1,641,015 + HP15_1560 0.28 -0.3 1,641,015 + HP15_1560 0.28 -0.1 1,641,023 - HP15_1560 0.28 -0.3 1,641,042 + HP15_1560 0.29 +0.9 1,641,042 + HP15_1560 0.29 -0.6 1,641,050 - HP15_1560 0.30 +0.3 1,641,124 + HP15_1560 0.33 +0.2 1,641,125 + HP15_1560 0.33 -0.3 1,641,159 + HP15_1560 0.34 +0.0
Or see this region's nucleotide sequence