Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_833 and HP15_834 are separated by 121 nucleotides HP15_834 and HP15_835 overlap by 7 nucleotides HP15_835 and HP15_836 are separated by 251 nucleotides
HP15_833: HP15_833 - 2,5-diketo-D-gluconic acid reductase B, at 851,577 to 852,386
_833
HP15_834: HP15_834 - glutathione-dependent formaldehyde-activating, GFA, at 852,508 to 852,921
_834
HP15_835: HP15_835 - secreted protein containing glucose sorbosone dehydrogenase domain, at 852,915 to 854,036
_835
HP15_836: HP15_836 - conserved hypothetical protein, at 854,288 to 855,109
_836
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -1
0
1 at 851.915 kb on + strand, within HP15_833 at 852.033 kb on + strand, within HP15_833 at 852.051 kb on - strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.123 kb on - strand, within HP15_833 at 852.123 kb on - strand, within HP15_833 at 852.215 kb on + strand, within HP15_833 at 852.277 kb on - strand, within HP15_833 at 852.292 kb on + strand, within HP15_833 at 852.478 kb on + strand at 852.478 kb on + strand at 852.486 kb on - strand at 852.498 kb on + strand at 852.498 kb on + strand at 852.602 kb on - strand, within HP15_834 at 852.653 kb on - strand, within HP15_834 at 852.659 kb on - strand, within HP15_834 at 852.752 kb on + strand, within HP15_834 at 853.034 kb on - strand, within HP15_835 at 853.141 kb on + strand, within HP15_835 at 853.149 kb on - strand, within HP15_835 at 853.220 kb on + strand, within HP15_835 at 853.238 kb on - strand, within HP15_835 at 853.323 kb on - strand, within HP15_835 at 853.336 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.537 kb on - strand, within HP15_835 at 853.605 kb on + strand, within HP15_835 at 853.640 kb on + strand, within HP15_835 at 853.658 kb on - strand, within HP15_835 at 853.685 kb on - strand, within HP15_835 at 853.798 kb on - strand, within HP15_835 at 853.919 kb on + strand, within HP15_835 at 854.019 kb on + strand at 854.020 kb on - strand at 854.131 kb on - strand at 854.142 kb on + strand at 854.276 kb on + strand at 854.326 kb on + strand at 854.439 kb on + strand, within HP15_836 at 854.467 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.573 kb on - strand, within HP15_836 at 854.590 kb on + strand, within HP15_836 at 854.608 kb on - strand, within HP15_836 at 854.644 kb on - strand, within HP15_836 at 854.646 kb on + strand, within HP15_836 at 854.894 kb on - strand, within HP15_836 at 855.027 kb on - strand at 855.029 kb on + strand at 855.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 851,915 + HP15_833 0.42 +1.5 852,033 + HP15_833 0.56 -0.2 852,051 - HP15_833 0.59 +0.6 852,115 + HP15_833 0.66 +0.2 852,115 + HP15_833 0.66 +0.5 852,115 + HP15_833 0.66 -0.3 852,115 + HP15_833 0.66 +0.6 852,123 - HP15_833 0.67 -0.0 852,123 - HP15_833 0.67 -0.6 852,215 + HP15_833 0.79 -0.3 852,277 - HP15_833 0.86 -0.4 852,292 + HP15_833 0.88 -0.3 852,478 + -0.1 852,478 + +0.4 852,486 - -0.6 852,498 + +0.1 852,498 + -0.3 852,602 - HP15_834 0.23 -0.2 852,653 - HP15_834 0.35 -1.5 852,659 - HP15_834 0.36 -0.2 852,752 + HP15_834 0.59 -0.0 853,034 - HP15_835 0.11 +0.8 853,141 + HP15_835 0.20 -1.5 853,149 - HP15_835 0.21 -0.2 853,220 + HP15_835 0.27 +0.5 853,238 - HP15_835 0.29 -0.4 853,323 - HP15_835 0.36 +0.8 853,336 - HP15_835 0.38 -0.2 853,503 - HP15_835 0.52 +0.2 853,503 - HP15_835 0.52 +0.6 853,537 - HP15_835 0.55 -0.4 853,605 + HP15_835 0.61 +0.1 853,640 + HP15_835 0.65 -0.9 853,658 - HP15_835 0.66 +0.1 853,685 - HP15_835 0.69 -0.4 853,798 - HP15_835 0.79 +0.4 853,919 + HP15_835 0.89 +0.3 854,019 + +0.2 854,020 - +0.2 854,131 - +0.4 854,142 + -1.4 854,276 + -0.1 854,326 + -0.2 854,439 + HP15_836 0.18 -0.1 854,467 - HP15_836 0.22 +0.2 854,524 - HP15_836 0.29 +0.3 854,524 - HP15_836 0.29 -0.3 854,573 - HP15_836 0.35 +0.2 854,590 + HP15_836 0.37 -0.0 854,608 - HP15_836 0.39 -0.1 854,644 - HP15_836 0.43 +0.6 854,646 + HP15_836 0.44 -0.6 854,894 - HP15_836 0.74 +0.5 855,027 - -1.5 855,029 + -0.5 855,029 + +1.5
Or see this region's nucleotide sequence