Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_535 and HP15_536 overlap by 1 nucleotides HP15_536 and HP15_537 are separated by 115 nucleotides HP15_537 and HP15_rRNA4 are separated by 200 nucleotides
HP15_535: HP15_535 - sulfite oxidase subunit YedY, at 552,475 to 553,449
_535
HP15_536: HP15_536 - ferric reductase domain protein protein transmembrane component, N-terminal domain protein, at 553,449 to 554,072
_536
HP15_537: HP15_537 - hypothetical protein, at 554,188 to 554,298
_537
HP15_rRNA4: HP15_rRNA4 - 16S ribosomal RNA, at 554,499 to 556,030
_rRNA4
Position (kb) 553
554
555 Strain fitness (log2 ratio) -1
0
1 at 552.520 kb on - strand at 552.538 kb on + strand at 552.774 kb on - strand, within HP15_535 at 552.846 kb on + strand, within HP15_535 at 552.900 kb on - strand, within HP15_535 at 553.026 kb on + strand, within HP15_535 at 553.165 kb on + strand, within HP15_535 at 553.184 kb on + strand, within HP15_535 at 553.241 kb on - strand, within HP15_535 at 553.274 kb on - strand, within HP15_535 at 553.306 kb on - strand, within HP15_535 at 553.341 kb on + strand, within HP15_535 at 553.348 kb on + strand, within HP15_535 at 553.353 kb on + strand at 553.358 kb on + strand at 553.376 kb on - strand at 553.416 kb on + strand at 553.424 kb on - strand at 553.424 kb on - strand at 553.949 kb on - strand, within HP15_536 at 553.966 kb on - strand, within HP15_536 at 554.186 kb on - strand at 554.188 kb on - strand at 554.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 552,520 - -0.3 552,538 + +0.2 552,774 - HP15_535 0.31 +0.5 552,846 + HP15_535 0.38 +0.8 552,900 - HP15_535 0.44 +0.6 553,026 + HP15_535 0.57 -0.1 553,165 + HP15_535 0.71 -0.3 553,184 + HP15_535 0.73 -0.4 553,241 - HP15_535 0.79 -0.3 553,274 - HP15_535 0.82 -0.8 553,306 - HP15_535 0.85 +0.7 553,341 + HP15_535 0.89 +0.0 553,348 + HP15_535 0.90 -0.6 553,353 + +0.0 553,358 + +1.4 553,376 - +1.5 553,416 + -0.0 553,424 - +0.9 553,424 - +0.5 553,949 - HP15_536 0.80 -0.5 553,966 - HP15_536 0.83 +0.3 554,186 - -0.3 554,188 - -0.4 554,188 - +0.2
Or see this region's nucleotide sequence