Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02940 and PGA1_c02950 are separated by 11 nucleotides PGA1_c02950 and PGA1_c02960 overlap by 4 nucleotides PGA1_c02960 and PGA1_c02970 overlap by 4 nucleotides
PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481
_c02940
PGA1_c02950: PGA1_c02950 - RNA methyltransferase-like protein, at 284,493 to 285,221
_c02950
PGA1_c02960: PGA1_c02960 - Predicted acetyltransferase, at 285,218 to 286,126
_c02960
PGA1_c02970: PGA1_c02970 - hypothetical protein, at 286,123 to 286,650
_c02970
Position (kb) 284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 284.528 kb on + strand at 284.538 kb on + strand at 284.550 kb on + strand at 284.558 kb on - strand at 284.601 kb on + strand, within PGA1_c02950 at 284.621 kb on + strand, within PGA1_c02950 at 284.633 kb on + strand, within PGA1_c02950 at 284.639 kb on - strand, within PGA1_c02950 at 284.647 kb on + strand, within PGA1_c02950 at 284.672 kb on + strand, within PGA1_c02950 at 284.677 kb on + strand, within PGA1_c02950 at 284.798 kb on - strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.810 kb on + strand, within PGA1_c02950 at 284.865 kb on + strand, within PGA1_c02950 at 284.873 kb on - strand, within PGA1_c02950 at 284.880 kb on + strand, within PGA1_c02950 at 284.908 kb on + strand, within PGA1_c02950 at 284.913 kb on - strand, within PGA1_c02950 at 284.962 kb on + strand, within PGA1_c02950 at 284.965 kb on - strand, within PGA1_c02950 at 285.000 kb on - strand, within PGA1_c02950 at 285.008 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.056 kb on - strand, within PGA1_c02950 at 285.124 kb on - strand, within PGA1_c02950 at 285.130 kb on - strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.136 kb on + strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.144 kb on - strand, within PGA1_c02950 at 285.171 kb on + strand at 285.331 kb on - strand, within PGA1_c02960 at 285.341 kb on - strand, within PGA1_c02960 at 285.392 kb on + strand, within PGA1_c02960 at 285.433 kb on + strand, within PGA1_c02960 at 285.503 kb on - strand, within PGA1_c02960 at 285.541 kb on + strand, within PGA1_c02960 at 285.554 kb on - strand, within PGA1_c02960 at 285.561 kb on + strand, within PGA1_c02960 at 285.647 kb on - strand, within PGA1_c02960 at 285.696 kb on + strand, within PGA1_c02960 at 285.810 kb on - strand, within PGA1_c02960 at 285.895 kb on + strand, within PGA1_c02960 at 285.903 kb on - strand, within PGA1_c02960 at 285.947 kb on + strand, within PGA1_c02960 at 285.950 kb on - strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.955 kb on + strand, within PGA1_c02960 at 285.963 kb on - strand, within PGA1_c02960 at 285.978 kb on + strand, within PGA1_c02960 at 285.986 kb on - strand, within PGA1_c02960 at 285.992 kb on + strand, within PGA1_c02960 at 286.013 kb on + strand, within PGA1_c02960 at 286.104 kb on + strand at 286.108 kb on + strand at 286.108 kb on + strand at 286.110 kb on - strand at 286.111 kb on - strand at 286.153 kb on + strand at 286.161 kb on - strand at 286.161 kb on - strand at 286.186 kb on + strand, within PGA1_c02970
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 284,528 + -0.9 284,538 + +0.1 284,550 + -0.2 284,558 - -0.1 284,601 + PGA1_c02950 0.15 -0.7 284,621 + PGA1_c02950 0.18 -1.8 284,633 + PGA1_c02950 0.19 +0.8 284,639 - PGA1_c02950 0.20 +0.2 284,647 + PGA1_c02950 0.21 +0.4 284,672 + PGA1_c02950 0.25 -0.5 284,677 + PGA1_c02950 0.25 -0.5 284,798 - PGA1_c02950 0.42 +0.0 284,810 + PGA1_c02950 0.43 -0.1 284,810 + PGA1_c02950 0.43 +0.2 284,865 + PGA1_c02950 0.51 -0.2 284,873 - PGA1_c02950 0.52 -0.7 284,880 + PGA1_c02950 0.53 -0.1 284,908 + PGA1_c02950 0.57 +0.8 284,913 - PGA1_c02950 0.58 -0.2 284,962 + PGA1_c02950 0.64 -0.6 284,965 - PGA1_c02950 0.65 -0.5 285,000 - PGA1_c02950 0.70 -3.3 285,008 - PGA1_c02950 0.71 -0.4 285,056 - PGA1_c02950 0.77 -2.3 285,056 - PGA1_c02950 0.77 +0.4 285,124 - PGA1_c02950 0.87 -0.4 285,130 - PGA1_c02950 0.87 +0.0 285,136 + PGA1_c02950 0.88 +0.8 285,136 + PGA1_c02950 0.88 -0.2 285,136 + PGA1_c02950 0.88 -0.1 285,144 - PGA1_c02950 0.89 +0.1 285,144 - PGA1_c02950 0.89 +0.5 285,144 - PGA1_c02950 0.89 +0.8 285,171 + -0.3 285,331 - PGA1_c02960 0.12 -0.2 285,341 - PGA1_c02960 0.14 -0.6 285,392 + PGA1_c02960 0.19 +0.8 285,433 + PGA1_c02960 0.24 +0.8 285,503 - PGA1_c02960 0.31 +0.4 285,541 + PGA1_c02960 0.36 +0.2 285,554 - PGA1_c02960 0.37 +0.0 285,561 + PGA1_c02960 0.38 +0.9 285,647 - PGA1_c02960 0.47 +0.8 285,696 + PGA1_c02960 0.53 -0.4 285,810 - PGA1_c02960 0.65 +0.2 285,895 + PGA1_c02960 0.74 +0.1 285,903 - PGA1_c02960 0.75 -0.6 285,947 + PGA1_c02960 0.80 +0.0 285,950 - PGA1_c02960 0.81 -0.2 285,955 + PGA1_c02960 0.81 +0.0 285,955 + PGA1_c02960 0.81 -0.4 285,955 + PGA1_c02960 0.81 -1.7 285,963 - PGA1_c02960 0.82 +0.6 285,978 + PGA1_c02960 0.84 +0.2 285,986 - PGA1_c02960 0.84 -0.5 285,992 + PGA1_c02960 0.85 -1.7 286,013 + PGA1_c02960 0.87 +0.0 286,104 + +1.3 286,108 + +0.6 286,108 + -0.0 286,110 - +0.0 286,111 - -0.2 286,153 + -1.0 286,161 - +0.3 286,161 - -0.1 286,186 + PGA1_c02970 0.12 +0.3
Or see this region's nucleotide sequence