Strain Fitness in Marinobacter adhaerens HP15 around HP15_1017

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1015 and HP15_1016 are separated by 395 nucleotidesHP15_1016 and HP15_1017 overlap by 4 nucleotidesHP15_1017 and HP15_1018 are separated by 250 nucleotides HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596 _1015 HP15_1016: HP15_1016 - acetolactate synthase II, small subunit-like protein, at 1,028,992 to 1,029,270 _1016 HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967 _1017 HP15_1018: HP15_1018 - efflux transporter, RND family, MFP subunit, at 1,031,218 to 1,032,360 _1018 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -1 0 1 2at 1028.303 kb on + strand, within HP15_1015at 1028.328 kb on + strand, within HP15_1015at 1028.375 kb on + strand, within HP15_1015at 1028.547 kb on + strand, within HP15_1015at 1028.547 kb on + strand, within HP15_1015at 1028.572 kb on + strandat 1028.572 kb on + strandat 1028.634 kb on - strandat 1028.761 kb on - strandat 1028.862 kb on - strandat 1028.983 kb on + strandat 1028.986 kb on - strandat 1029.115 kb on + strand, within HP15_1016at 1029.179 kb on + strand, within HP15_1016at 1029.231 kb on + strand, within HP15_1016at 1029.259 kb on - strandat 1029.365 kb on + strandat 1029.435 kb on + strandat 1029.435 kb on + strandat 1029.538 kb on + strand, within HP15_1017at 1029.735 kb on + strand, within HP15_1017at 1029.767 kb on - strand, within HP15_1017at 1029.792 kb on + strand, within HP15_1017at 1029.937 kb on + strand, within HP15_1017at 1029.967 kb on - strand, within HP15_1017at 1029.983 kb on + strand, within HP15_1017at 1030.026 kb on + strand, within HP15_1017at 1030.034 kb on - strand, within HP15_1017at 1030.115 kb on + strand, within HP15_1017at 1030.115 kb on + strand, within HP15_1017at 1030.123 kb on - strand, within HP15_1017at 1030.178 kb on - strand, within HP15_1017at 1030.246 kb on - strand, within HP15_1017at 1030.288 kb on + strand, within HP15_1017at 1030.300 kb on + strand, within HP15_1017at 1030.300 kb on + strand, within HP15_1017at 1030.308 kb on - strand, within HP15_1017at 1030.317 kb on + strand, within HP15_1017at 1030.355 kb on + strand, within HP15_1017at 1030.360 kb on + strand, within HP15_1017at 1030.368 kb on - strand, within HP15_1017at 1030.371 kb on - strand, within HP15_1017at 1030.501 kb on + strand, within HP15_1017at 1030.509 kb on - strand, within HP15_1017at 1030.510 kb on + strand, within HP15_1017at 1030.518 kb on - strand, within HP15_1017at 1030.518 kb on - strand, within HP15_1017at 1030.533 kb on - strand, within HP15_1017at 1030.653 kb on + strand, within HP15_1017at 1030.658 kb on + strand, within HP15_1017at 1030.671 kb on - strand, within HP15_1017at 1030.671 kb on - strand, within HP15_1017at 1030.678 kb on - strand, within HP15_1017at 1030.818 kb on + strandat 1030.905 kb on + strandat 1030.905 kb on + strandat 1030.905 kb on + strandat 1030.913 kb on - strandat 1030.913 kb on - strandat 1031.041 kb on + strandat 1031.188 kb on + strandat 1031.218 kb on + strandat 1031.300 kb on + strandat 1031.397 kb on - strand, within HP15_1018at 1031.397 kb on - strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.420 kb on - strand, within HP15_1018at 1031.525 kb on + strand, within HP15_1018at 1031.570 kb on - strand, within HP15_1018at 1031.842 kb on - strand, within HP15_1018at 1031.879 kb on + strand, within HP15_1018

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,028,303 + HP15_1015 0.34 +0.4
1,028,328 + HP15_1015 0.39 -0.1
1,028,375 + HP15_1015 0.50 -0.5
1,028,547 + HP15_1015 0.89 -0.4
1,028,547 + HP15_1015 0.89 +0.4
1,028,572 + +0.8
1,028,572 + +0.7
1,028,634 - -0.5
1,028,761 - +0.2
1,028,862 - +0.1
1,028,983 + +0.6
1,028,986 - +0.0
1,029,115 + HP15_1016 0.44 +1.2
1,029,179 + HP15_1016 0.67 +0.0
1,029,231 + HP15_1016 0.86 +0.6
1,029,259 - +0.0
1,029,365 + +1.1
1,029,435 + +0.6
1,029,435 + +0.1
1,029,538 + HP15_1017 0.16 +0.4
1,029,735 + HP15_1017 0.28 +0.5
1,029,767 - HP15_1017 0.29 +1.2
1,029,792 + HP15_1017 0.31 +1.1
1,029,937 + HP15_1017 0.39 +0.3
1,029,967 - HP15_1017 0.41 -0.2
1,029,983 + HP15_1017 0.42 +0.2
1,030,026 + HP15_1017 0.45 -0.3
1,030,034 - HP15_1017 0.45 +0.2
1,030,115 + HP15_1017 0.50 +0.5
1,030,115 + HP15_1017 0.50 +0.2
1,030,123 - HP15_1017 0.50 +0.2
1,030,178 - HP15_1017 0.54 +1.9
1,030,246 - HP15_1017 0.58 +0.3
1,030,288 + HP15_1017 0.60 -0.1
1,030,300 + HP15_1017 0.61 +0.8
1,030,300 + HP15_1017 0.61 +1.4
1,030,308 - HP15_1017 0.61 +0.3
1,030,317 + HP15_1017 0.62 +0.1
1,030,355 + HP15_1017 0.64 -0.0
1,030,360 + HP15_1017 0.64 +1.2
1,030,368 - HP15_1017 0.65 +0.2
1,030,371 - HP15_1017 0.65 +0.1
1,030,501 + HP15_1017 0.73 +0.3
1,030,509 - HP15_1017 0.73 +0.7
1,030,510 + HP15_1017 0.73 +0.7
1,030,518 - HP15_1017 0.74 +0.3
1,030,518 - HP15_1017 0.74 +0.3
1,030,533 - HP15_1017 0.74 +1.2
1,030,653 + HP15_1017 0.81 +0.9
1,030,658 + HP15_1017 0.82 +0.8
1,030,671 - HP15_1017 0.83 +1.3
1,030,671 - HP15_1017 0.83 +0.3
1,030,678 - HP15_1017 0.83 +0.6
1,030,818 + +0.5
1,030,905 + -0.1
1,030,905 + +0.8
1,030,905 + +0.2
1,030,913 - -0.0
1,030,913 - -0.1
1,031,041 + +0.7
1,031,188 + +0.1
1,031,218 + -0.0
1,031,300 + +0.2
1,031,397 - HP15_1018 0.16 -0.2
1,031,397 - HP15_1018 0.16 +0.6
1,031,412 + HP15_1018 0.17 -0.9
1,031,412 + HP15_1018 0.17 +0.4
1,031,412 + HP15_1018 0.17 -0.4
1,031,412 + HP15_1018 0.17 +0.7
1,031,420 - HP15_1018 0.18 -0.0
1,031,525 + HP15_1018 0.27 +0.7
1,031,570 - HP15_1018 0.31 +0.3
1,031,842 - HP15_1018 0.55 +0.7
1,031,879 + HP15_1018 0.58 -0.9

Or see this region's nucleotide sequence