Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1015 and HP15_1016 are separated by 395 nucleotides HP15_1016 and HP15_1017 overlap by 4 nucleotides HP15_1017 and HP15_1018 are separated by 250 nucleotides
HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596
_1015
HP15_1016: HP15_1016 - acetolactate synthase II, small subunit-like protein, at 1,028,992 to 1,029,270
_1016
HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967
_1017
HP15_1018: HP15_1018 - efflux transporter, RND family, MFP subunit, at 1,031,218 to 1,032,360
_1018
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-1
0
1
2 at 1028.303 kb on + strand, within HP15_1015 at 1028.328 kb on + strand, within HP15_1015 at 1028.375 kb on + strand, within HP15_1015 at 1028.547 kb on + strand, within HP15_1015 at 1028.547 kb on + strand, within HP15_1015 at 1028.572 kb on + strand at 1028.572 kb on + strand at 1028.634 kb on - strand at 1028.761 kb on - strand at 1028.862 kb on - strand at 1028.983 kb on + strand at 1028.986 kb on - strand at 1029.115 kb on + strand, within HP15_1016 at 1029.179 kb on + strand, within HP15_1016 at 1029.231 kb on + strand, within HP15_1016 at 1029.259 kb on - strand at 1029.365 kb on + strand at 1029.435 kb on + strand at 1029.435 kb on + strand at 1029.538 kb on + strand, within HP15_1017 at 1029.735 kb on + strand, within HP15_1017 at 1029.767 kb on - strand, within HP15_1017 at 1029.792 kb on + strand, within HP15_1017 at 1029.937 kb on + strand, within HP15_1017 at 1029.967 kb on - strand, within HP15_1017 at 1029.983 kb on + strand, within HP15_1017 at 1030.026 kb on + strand, within HP15_1017 at 1030.034 kb on - strand, within HP15_1017 at 1030.115 kb on + strand, within HP15_1017 at 1030.115 kb on + strand, within HP15_1017 at 1030.123 kb on - strand, within HP15_1017 at 1030.178 kb on - strand, within HP15_1017 at 1030.246 kb on - strand, within HP15_1017 at 1030.288 kb on + strand, within HP15_1017 at 1030.300 kb on + strand, within HP15_1017 at 1030.300 kb on + strand, within HP15_1017 at 1030.308 kb on - strand, within HP15_1017 at 1030.317 kb on + strand, within HP15_1017 at 1030.355 kb on + strand, within HP15_1017 at 1030.360 kb on + strand, within HP15_1017 at 1030.368 kb on - strand, within HP15_1017 at 1030.371 kb on - strand, within HP15_1017 at 1030.501 kb on + strand, within HP15_1017 at 1030.509 kb on - strand, within HP15_1017 at 1030.510 kb on + strand, within HP15_1017 at 1030.518 kb on - strand, within HP15_1017 at 1030.518 kb on - strand, within HP15_1017 at 1030.533 kb on - strand, within HP15_1017 at 1030.653 kb on + strand, within HP15_1017 at 1030.658 kb on + strand, within HP15_1017 at 1030.671 kb on - strand, within HP15_1017 at 1030.671 kb on - strand, within HP15_1017 at 1030.678 kb on - strand, within HP15_1017 at 1030.818 kb on + strand at 1030.905 kb on + strand at 1030.905 kb on + strand at 1030.905 kb on + strand at 1030.913 kb on - strand at 1030.913 kb on - strand at 1031.041 kb on + strand at 1031.188 kb on + strand at 1031.218 kb on + strand at 1031.300 kb on + strand at 1031.397 kb on - strand, within HP15_1018 at 1031.397 kb on - strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.412 kb on + strand, within HP15_1018 at 1031.420 kb on - strand, within HP15_1018 at 1031.525 kb on + strand, within HP15_1018 at 1031.570 kb on - strand, within HP15_1018 at 1031.842 kb on - strand, within HP15_1018 at 1031.879 kb on + strand, within HP15_1018
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,028,303 + HP15_1015 0.34 +0.4 1,028,328 + HP15_1015 0.39 -0.1 1,028,375 + HP15_1015 0.50 -0.5 1,028,547 + HP15_1015 0.89 -0.4 1,028,547 + HP15_1015 0.89 +0.4 1,028,572 + +0.8 1,028,572 + +0.7 1,028,634 - -0.5 1,028,761 - +0.2 1,028,862 - +0.1 1,028,983 + +0.6 1,028,986 - +0.0 1,029,115 + HP15_1016 0.44 +1.2 1,029,179 + HP15_1016 0.67 +0.0 1,029,231 + HP15_1016 0.86 +0.6 1,029,259 - +0.0 1,029,365 + +1.1 1,029,435 + +0.6 1,029,435 + +0.1 1,029,538 + HP15_1017 0.16 +0.4 1,029,735 + HP15_1017 0.28 +0.5 1,029,767 - HP15_1017 0.29 +1.2 1,029,792 + HP15_1017 0.31 +1.1 1,029,937 + HP15_1017 0.39 +0.3 1,029,967 - HP15_1017 0.41 -0.2 1,029,983 + HP15_1017 0.42 +0.2 1,030,026 + HP15_1017 0.45 -0.3 1,030,034 - HP15_1017 0.45 +0.2 1,030,115 + HP15_1017 0.50 +0.5 1,030,115 + HP15_1017 0.50 +0.2 1,030,123 - HP15_1017 0.50 +0.2 1,030,178 - HP15_1017 0.54 +1.9 1,030,246 - HP15_1017 0.58 +0.3 1,030,288 + HP15_1017 0.60 -0.1 1,030,300 + HP15_1017 0.61 +0.8 1,030,300 + HP15_1017 0.61 +1.4 1,030,308 - HP15_1017 0.61 +0.3 1,030,317 + HP15_1017 0.62 +0.1 1,030,355 + HP15_1017 0.64 -0.0 1,030,360 + HP15_1017 0.64 +1.2 1,030,368 - HP15_1017 0.65 +0.2 1,030,371 - HP15_1017 0.65 +0.1 1,030,501 + HP15_1017 0.73 +0.3 1,030,509 - HP15_1017 0.73 +0.7 1,030,510 + HP15_1017 0.73 +0.7 1,030,518 - HP15_1017 0.74 +0.3 1,030,518 - HP15_1017 0.74 +0.3 1,030,533 - HP15_1017 0.74 +1.2 1,030,653 + HP15_1017 0.81 +0.9 1,030,658 + HP15_1017 0.82 +0.8 1,030,671 - HP15_1017 0.83 +1.3 1,030,671 - HP15_1017 0.83 +0.3 1,030,678 - HP15_1017 0.83 +0.6 1,030,818 + +0.5 1,030,905 + -0.1 1,030,905 + +0.8 1,030,905 + +0.2 1,030,913 - -0.0 1,030,913 - -0.1 1,031,041 + +0.7 1,031,188 + +0.1 1,031,218 + -0.0 1,031,300 + +0.2 1,031,397 - HP15_1018 0.16 -0.2 1,031,397 - HP15_1018 0.16 +0.6 1,031,412 + HP15_1018 0.17 -0.9 1,031,412 + HP15_1018 0.17 +0.4 1,031,412 + HP15_1018 0.17 -0.4 1,031,412 + HP15_1018 0.17 +0.7 1,031,420 - HP15_1018 0.18 -0.0 1,031,525 + HP15_1018 0.27 +0.7 1,031,570 - HP15_1018 0.31 +0.3 1,031,842 - HP15_1018 0.55 +0.7 1,031,879 + HP15_1018 0.58 -0.9
Or see this region's nucleotide sequence