Strain Fitness in Shewanella amazonensis SB2B around Sama_2791

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
3,330,061	-		Sama_2788	0.81	+3.6
3,330,061	-		Sama_2788	0.81	-0.1
3,330,076	+		Sama_2788	0.85	+0.7
3,330,076	+		Sama_2788	0.85	-0.7
3,330,077	-		Sama_2788	0.85	+0.7
3,330,077	-		Sama_2788	0.85	+2.6
3,330,123	+				-1.2
3,330,123	+				-1.4
3,330,124	-				+0.1
3,330,124	-				-1.0
3,330,127	+				+0.4
3,330,127	+				-1.9
3,330,153	+				+2.1
3,330,177	+				-0.7
3,330,177	+				-1.0
3,330,177	+				+0.5
3,330,178	-				+1.3
3,330,193	+				+1.3
3,330,194	-				-2.5
3,330,194	-				+0.9
3,330,194	-				+0.7
3,330,233	+		Sama_2789	0.14	-0.3
3,330,326	+		Sama_2789	0.36	-1.2
3,330,343	-		Sama_2789	0.40	-0.2
3,330,346	+		Sama_2789	0.40	-0.1
3,330,346	+		Sama_2789	0.40	+2.1
3,330,509	+		Sama_2789	0.78	-1.8
3,330,510	-		Sama_2789	0.79	-1.5
3,330,551	+		Sama_2789	0.88	-0.9
3,330,551	+		Sama_2789	0.88	+1.6
3,330,551	+		Sama_2789	0.88	+5.9
3,330,584	+				-1.0
3,330,834	+		Sama_2790	0.66	-0.2
3,330,835	-		Sama_2790	0.66	-0.6
3,330,868	+		Sama_2790	0.74	-2.1
3,330,868	+		Sama_2790	0.74	-2.2
3,330,868	+		Sama_2790	0.74	+2.4
3,330,912	+		Sama_2790	0.84	-1.3
3,330,912	+		Sama_2790	0.84	+1.3
3,330,912	+		Sama_2790	0.84	+1.8
3,330,912	+		Sama_2790	0.84	-0.9
3,330,913	-		Sama_2790	0.85	-1.5
3,330,913	-		Sama_2790	0.85	+0.7
3,330,913	-		Sama_2790	0.85	-1.6
3,330,914	+		Sama_2790	0.85	-1.1
3,330,914	+		Sama_2790	0.85	-1.3
3,330,914	+		Sama_2790	0.85	+1.3
3,330,914	+		Sama_2790	0.85	+2.5
3,330,914	+		Sama_2790	0.85	-1.1
3,330,914	+		Sama_2790	0.85	+2.4
3,330,914	+		Sama_2790	0.85	-0.2
3,330,914	+		Sama_2790	0.85	-1.3
3,330,914	+		Sama_2790	0.85	+2.0
3,330,914	+		Sama_2790	0.85	+0.8
3,330,915	-		Sama_2790	0.85	+0.9
3,330,915	-		Sama_2790	0.85	+2.9
3,330,915	-		Sama_2790	0.85	+1.1
3,330,915	-		Sama_2790	0.85	+2.1
3,330,915	-		Sama_2790	0.85	+0.3
3,330,915	-		Sama_2790	0.85	+2.6
3,330,915	-		Sama_2790	0.85	-0.6
3,330,915	-		Sama_2790	0.85	-0.9
3,330,955	+				+1.5
3,331,007	-				+1.4
3,331,007	-				-1.5
3,331,007	-				-1.5
3,331,025	+				-1.1
3,331,026	-				+0.1
3,331,026	-				+0.7
3,331,026	-				-1.0
3,331,026	-				+2.3
3,331,070	+				-0.9
3,331,070	+				-0.2
3,331,070	+				+3.8
3,331,071	-				+0.5
3,331,071	-				-1.1
3,331,071	-				-0.6
3,331,071	-				-1.3
3,331,073	-				+0.7
3,331,073	-				-2.2
3,331,073	-				-0.2
3,331,090	-				+0.9
3,331,222	+		Sama_2791	0.33	-1.3
3,331,222	+		Sama_2791	0.33	-0.2
3,331,222	+		Sama_2791	0.33	+2.7
3,331,222	+		Sama_2791	0.33	-0.4
3,331,222	+		Sama_2791	0.33	+3.5
3,331,223	-		Sama_2791	0.33	-2.1
3,331,223	-		Sama_2791	0.33	-0.3
3,331,419	+		Sama_2791	0.72	+0.7
3,331,420	-		Sama_2791	0.72	-1.4
3,331,420	-		Sama_2791	0.72	+2.9
3,331,468	+		Sama_2791	0.82	-1.8
3,331,469	-		Sama_2791	0.82	-0.6
3,331,469	-		Sama_2791	0.82	-2.0
3,331,555	+				+3.7
3,331,555	+				+0.1
3,331,578	+				+0.7
3,331,578	+				-0.6
3,331,645	+				-1.7
3,331,645	+				-0.5
3,331,667	-		Sama_2792	0.12	+3.5
3,331,689	+		Sama_2792	0.16	-1.2
3,331,690	-		Sama_2792	0.16	-1.5
3,331,708	+		Sama_2792	0.20	-2.4
3,331,709	-		Sama_2792	0.20	-0.8
3,331,738	+		Sama_2792	0.25	+1.6
3,331,821	+		Sama_2792	0.41	-0.9
3,331,821	+		Sama_2792	0.41	-0.3
3,331,821	+		Sama_2792	0.41	-1.3
3,331,822	-		Sama_2792	0.41	-0.2
3,331,822	-		Sama_2792	0.41	+2.0
3,331,822	-		Sama_2792	0.41	-1.9
3,331,822	-		Sama_2792	0.41	-0.3
3,331,831	+		Sama_2792	0.43	+1.3
3,331,831	+		Sama_2792	0.43	+0.6
3,331,832	-		Sama_2792	0.43	-0.1
3,331,945	+		Sama_2792	0.64	-1.5
3,331,960	-		Sama_2792	0.67	+2.8
3,331,960	-		Sama_2792	0.67	+3.4
3,332,015	+		Sama_2792	0.77	-0.5
3,332,015	+		Sama_2792	0.77	+3.4
3,332,016	-		Sama_2792	0.77	+3.9
3,332,016	-		Sama_2792	0.77	+2.7
3,332,042	-		Sama_2792	0.82	-0.6
3,332,042	-		Sama_2792	0.82	+7.0
3,332,042	-		Sama_2792	0.82	+1.0
3,332,140	-				-1.0
3,332,156	-				-2.3
3,332,156	-				+2.2
3,332,160	+				-0.3
3,332,169	+				-0.4
3,332,170	-				+1.3
3,332,172	+				-0.3
3,332,173	-				-2.1
3,332,246	+				-0.2
3,332,270	+				+0.4
3,332,271	-				+1.2
3,332,276	+				+0.1
3,332,276	+				-1.3
3,332,277	-				-2.7
3,332,277	-				+1.0
3,332,277	-				+1.7
3,332,287	+				-0.3
3,332,288	-				+2.2
3,332,288	-				+2.6
3,332,309	+				+0.5
3,332,309	+				+5.7
3,332,309	+				+5.6
3,332,309	+				-1.3
3,332,310	-				-0.6
3,332,310	-				+5.4
3,332,310	-				+2.6
3,332,310	-				+3.4
3,332,346	-				+4.3
3,332,346	-				-2.3
3,332,384	+				+4.5
3,332,385	-				+0.0
3,332,385	-				-0.9
3,332,424	-		Sama_2793	0.21	+4.5
3,332,453	+		Sama_2793	0.32	-0.5
3,332,453	+		Sama_2793	0.32	-2.3
3,332,453	+		Sama_2793	0.32	+7.7
3,332,453	+		Sama_2793	0.32	+5.5
3,332,454	-		Sama_2793	0.33	-1.9
3,332,454	-		Sama_2793	0.33	+0.7
3,332,454	-		Sama_2793	0.33	+3.3
3,332,454	-		Sama_2793	0.33	+0.7
3,332,454	-		Sama_2793	0.33	+2.7