Strain Fitness in Shewanella amazonensis SB2B around Sama_2398

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
2,880,872	+		Sama_2397	0.44	-2.0
2,880,873	-		Sama_2397	0.44	+0.1
2,880,913	+		Sama_2397	0.46	-0.7
2,880,913	+		Sama_2397	0.46	+1.9
2,880,913	+		Sama_2397	0.46	-1.5
2,880,914	-		Sama_2397	0.46	-0.2
2,880,950	+		Sama_2397	0.49	+1.4
2,880,951	-		Sama_2397	0.49	+1.0
2,880,968	+		Sama_2397	0.50	-0.8
2,880,969	-		Sama_2397	0.50	-2.3
2,881,181	+		Sama_2397	0.63	-1.8
2,881,511	+		Sama_2397	0.84	+0.0
2,881,512	-		Sama_2397	0.84	+0.8
2,881,543	+		Sama_2397	0.86	-0.9
2,881,544	-		Sama_2397	0.86	-0.1
2,881,544	-		Sama_2397	0.86	-0.3
2,881,568	-		Sama_2397	0.87	+2.4
2,881,598	+		Sama_2397	0.89	-0.9
2,881,598	+		Sama_2397	0.89	-0.9
2,881,598	+		Sama_2397	0.89	+0.5
2,881,599	-		Sama_2397	0.89	+0.1
2,881,627	+				+0.3
2,881,628	-				-2.9
2,881,628	-				-2.9
2,881,628	-				-1.7
2,881,628	-				-1.9
2,881,628	-				-2.9
2,881,686	-				-2.2
2,881,730	+				-0.3
2,881,743	-				-0.9
2,881,765	+				-1.1
2,881,766	-				+0.3
2,881,766	-				-2.0
2,881,767	+				+2.5
2,881,767	+				+0.3
2,881,767	+				+2.3
2,881,767	+				-1.2
2,881,774	+				-1.1
2,881,775	-				+2.2
2,881,846	-				+3.9
2,881,849	+				+2.8
2,881,850	-				-2.1
2,881,850	-				+3.4
2,881,851	+				+0.4
2,881,851	+				-1.6
2,881,851	+				+2.8
2,881,852	-				+2.5
2,881,852	-				+1.8
2,881,852	-				-0.7
2,881,852	-				+1.9
2,881,852	-				+1.3
2,881,852	-				+5.1
2,881,931	-		Sama_2398	0.31	+2.6
2,881,954	-		Sama_2398	0.39	-1.0
2,881,969	+		Sama_2398	0.44	-0.7
2,882,092	+		Sama_2398	0.88	-0.4
2,882,092	+		Sama_2398	0.88	+0.8
2,882,093	-		Sama_2398	0.88	+0.1
2,882,109	-				-0.3
2,882,112	+				+0.5
2,882,112	+				-1.5
2,882,113	-				-1.7
2,882,113	-				+3.7
2,882,128	+				-1.7
2,882,129	-				+0.7
2,882,242	+				-2.2
2,882,242	+				-0.2
2,882,269	-				+1.7
2,882,269	-				-0.9
2,882,351	+		Sama_2399	0.18	+1.2
2,882,355	+		Sama_2399	0.19	+1.0
2,882,356	-		Sama_2399	0.19	-0.1
2,882,356	-		Sama_2399	0.19	-1.9
2,882,356	-		Sama_2399	0.19	-0.2
2,882,376	-		Sama_2399	0.22	+3.5
2,882,571	+		Sama_2399	0.54	-0.9
2,882,571	+		Sama_2399	0.54	-1.8
2,882,572	-		Sama_2399	0.55	+2.5
2,882,595	-		Sama_2399	0.58	+0.7
2,882,676	-		Sama_2399	0.72	-2.3
2,882,697	+		Sama_2399	0.75	-0.7
2,882,808	+				-1.7
2,882,808	+				-1.3
2,882,809	-				-1.1
2,882,809	-				-2.8
2,882,809	-				-1.7
2,882,809	-				+0.1
2,882,833	+				-1.5
2,882,833	+				-1.7
2,882,833	+				+0.3
2,882,833	+				-2.2
2,882,833	+				-0.9
2,882,834	-				+0.5
2,882,834	-				+4.7
2,882,834	-				-1.7
2,882,869	+				-1.5
2,882,870	-				-2.2
2,882,870	-				-0.3
2,882,870	-				-0.7
2,882,870	-				-0.9
2,882,870	-				+0.3
2,882,870	-				-0.9
2,882,870	-				+0.3
2,882,870	-				+2.3
2,882,870	-				-1.5
2,882,870	-				-1.1
2,882,875	+				-0.8
2,882,875	+				+1.5
2,882,875	+				-0.3
2,882,876	-				-1.2
2,882,876	-				-0.5
2,882,876	-				-1.1
2,882,876	-				-0.3
2,882,876	-				-0.5
2,882,876	-				-0.3
2,882,876	-				-2.6
2,882,913	-				+0.7
2,882,913	-				-2.0
2,882,986	-				+0.7
2,882,986	-				-0.3
2,882,998	-				+0.0
2,883,107	+		Sama_2400	0.15	+0.3
2,883,107	+		Sama_2400	0.15	-1.3
2,883,107	+		Sama_2400	0.15	-1.3