Strain Fitness in Shewanella amazonensis SB2B around Sama_2168

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
2,621,859	-	fadJ	Sama_2167	0.54	-0.8
2,621,859	-	fadJ	Sama_2167	0.54	+0.4
2,621,979	-	fadJ	Sama_2167	0.59	-0.8
2,622,109	+	fadJ	Sama_2167	0.65	+0.6
2,622,109	+	fadJ	Sama_2167	0.65	-2.0
2,622,110	-	fadJ	Sama_2167	0.65	-1.0
2,622,110	-	fadJ	Sama_2167	0.65	+0.3
2,622,110	-	fadJ	Sama_2167	0.65	-2.1
2,622,110	-	fadJ	Sama_2167	0.65	-0.0
2,622,234	-	fadJ	Sama_2167	0.71	-2.4
2,622,234	-	fadJ	Sama_2167	0.71	+4.6
2,622,286	-	fadJ	Sama_2167	0.74	-1.1
2,622,286	-	fadJ	Sama_2167	0.74	+0.4
2,622,286	-	fadJ	Sama_2167	0.74	+1.0
2,622,286	-	fadJ	Sama_2167	0.74	-1.6
2,622,421	-	fadJ	Sama_2167	0.80	-1.0
2,622,545	+	fadJ	Sama_2167	0.86	-0.4
2,622,546	-	fadJ	Sama_2167	0.86	+1.6
2,622,546	-	fadJ	Sama_2167	0.86	+0.6
2,622,546	-	fadJ	Sama_2167	0.86	+3.6
2,622,635	-				-2.3
2,622,639	-				-1.2
2,622,723	+				-0.8
2,622,724	-				+0.6
2,622,822	+				-2.0
2,622,823	-				+1.9
2,622,851	-				-0.8
2,622,954	-				+0.5
2,622,991	+	fadI	Sama_2168	0.11	+0.1
2,622,992	-	fadI	Sama_2168	0.11	-1.3
2,623,100	+	fadI	Sama_2168	0.19	-1.8
2,623,101	-	fadI	Sama_2168	0.19	-0.6
2,623,101	-	fadI	Sama_2168	0.19	-1.9
2,623,101	-	fadI	Sama_2168	0.19	-1.1
2,623,167	-	fadI	Sama_2168	0.24	+1.1
2,623,178	+	fadI	Sama_2168	0.25	+0.6
2,623,178	+	fadI	Sama_2168	0.25	+4.6
2,623,179	-	fadI	Sama_2168	0.25	-2.2
2,623,179	-	fadI	Sama_2168	0.25	+1.3
2,623,249	+	fadI	Sama_2168	0.31	-1.6
2,623,250	-	fadI	Sama_2168	0.31	-2.2
2,623,276	+	fadI	Sama_2168	0.33	-1.9
2,623,343	+	fadI	Sama_2168	0.38	-1.6
2,623,343	+	fadI	Sama_2168	0.38	+3.9
2,623,343	+	fadI	Sama_2168	0.38	-2.8
2,623,344	-	fadI	Sama_2168	0.38	-0.0
2,623,344	-	fadI	Sama_2168	0.38	-0.7
2,623,344	-	fadI	Sama_2168	0.38	+1.8
2,623,403	-	fadI	Sama_2168	0.42	-0.4
2,623,459	+	fadI	Sama_2168	0.47	+1.1
2,623,460	-	fadI	Sama_2168	0.47	+4.2
2,623,482	+	fadI	Sama_2168	0.48	-1.8
2,623,483	-	fadI	Sama_2168	0.48	-0.2
2,623,548	-	fadI	Sama_2168	0.53	-1.8
2,623,628	-	fadI	Sama_2168	0.59	+1.7
2,623,768	-	fadI	Sama_2168	0.70	-0.7
2,623,768	-	fadI	Sama_2168	0.70	+1.7
2,623,883	-	fadI	Sama_2168	0.79	+2.1
2,623,883	-	fadI	Sama_2168	0.79	-2.1
2,623,883	-	fadI	Sama_2168	0.79	+0.4
2,623,883	-	fadI	Sama_2168	0.79	-0.7
2,623,883	-	fadI	Sama_2168	0.79	-1.4
2,623,883	-	fadI	Sama_2168	0.79	+0.2
2,623,956	+	fadI	Sama_2168	0.84	+2.2
2,623,957	-	fadI	Sama_2168	0.85	+0.6
2,623,957	-	fadI	Sama_2168	0.85	+0.8
2,623,957	-	fadI	Sama_2168	0.85	-1.3
2,623,959	+	fadI	Sama_2168	0.85	-0.0
2,623,959	+	fadI	Sama_2168	0.85	-0.0
2,623,959	+	fadI	Sama_2168	0.85	-1.6
2,623,970	-	fadI	Sama_2168	0.86	+1.4
2,624,014	-	fadI	Sama_2168	0.89	+1.6
2,624,118	-				-0.8
2,624,139	+				+1.0
2,624,140	-				-1.1
2,624,173	+				+1.0
2,624,173	+				-1.7
2,624,174	-				+1.4
2,624,342	+				-1.0
2,624,360	+				+2.1
2,624,360	+				+3.0
2,624,361	-				-0.2
2,624,366	+				-1.2
2,624,371	+				+0.4
2,624,371	+				+1.0
2,624,371	+				-0.8
2,624,471	-				-2.3
2,624,481	+				+3.0
2,624,503	-		Sama_2169	0.12	-0.8
2,624,630	+		Sama_2169	0.25	-0.7
2,624,630	+		Sama_2169	0.25	-2.2
2,624,631	-		Sama_2169	0.25	-1.1
2,624,631	-		Sama_2169	0.25	-1.3
2,624,631	-		Sama_2169	0.25	-0.0
2,624,671	+		Sama_2169	0.30	-0.0
2,624,672	-		Sama_2169	0.30	-2.3
2,624,686	+		Sama_2169	0.31	-2.7
2,624,686	+		Sama_2169	0.31	-3.0
2,624,783	+		Sama_2169	0.41	-1.4
2,624,846	+		Sama_2169	0.48	-1.2
2,624,847	-		Sama_2169	0.48	-1.4
2,624,847	-		Sama_2169	0.48	-1.4
2,624,901	-		Sama_2169	0.54	-1.9
2,624,932	+		Sama_2169	0.57	-0.8
2,624,932	+		Sama_2169	0.57	-1.4
2,624,932	+		Sama_2169	0.57	-1.8
2,625,013	+		Sama_2169	0.65	-2.0
2,625,013	+		Sama_2169	0.65	-1.0
2,625,032	+		Sama_2169	0.67	-3.6
2,625,032	+		Sama_2169	0.67	-0.0
2,625,056	+		Sama_2169	0.70	-0.6
2,625,056	+		Sama_2169	0.70	-1.5
2,625,056	+		Sama_2169	0.70	+1.1
2,625,056	+		Sama_2169	0.70	-2.9
2,625,056	+		Sama_2169	0.70	-2.0
2,625,056	+		Sama_2169	0.70	-0.8
2,625,057	-		Sama_2169	0.70	-0.4
2,625,057	-		Sama_2169	0.70	+0.6
2,625,057	-		Sama_2169	0.70	-2.6
2,625,057	-		Sama_2169	0.70	-0.2
2,625,058	+		Sama_2169	0.70	-0.8
2,625,058	+		Sama_2169	0.70	-0.4
2,625,058	+		Sama_2169	0.70	-2.0
2,625,058	+		Sama_2169	0.70	+1.2
2,625,058	+		Sama_2169	0.70	+0.2
2,625,058	+		Sama_2169	0.70	-0.8
2,625,058	+		Sama_2169	0.70	-1.4
2,625,059	-		Sama_2169	0.70	-0.8
2,625,059	-		Sama_2169	0.70	-0.8
2,625,059	-		Sama_2169	0.70	-1.2
2,625,094	+		Sama_2169	0.74	-1.9
2,625,094	+		Sama_2169	0.74	-0.4
2,625,095	-		Sama_2169	0.74	-1.9
2,625,098	+		Sama_2169	0.74	-0.4
2,625,099	-		Sama_2169	0.74	-1.2
2,625,099	-		Sama_2169	0.74	-1.2
2,625,099	-		Sama_2169	0.74	-1.4
2,625,128	+		Sama_2169	0.77	-1.2
2,625,129	-		Sama_2169	0.78	-2.8
2,625,129	-		Sama_2169	0.78	-2.8