Strain Fitness in Shewanella amazonensis SB2B around Sama_2080

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
2,521,420	+		Sama_2079	0.54	-1.5
2,521,421	-		Sama_2079	0.54	-0.0
2,521,432	-		Sama_2079	0.55	+0.2
2,521,500	+		Sama_2079	0.58	-0.6
2,521,500	+		Sama_2079	0.58	+1.5
2,521,501	-		Sama_2079	0.59	-0.6
2,521,501	-		Sama_2079	0.59	-1.3
2,521,550	-		Sama_2079	0.61	-1.5
2,521,590	+		Sama_2079	0.63	-0.1
2,521,716	+		Sama_2079	0.70	+0.9
2,521,716	+		Sama_2079	0.70	+0.5
2,521,717	-		Sama_2079	0.70	-0.5
2,521,719	+		Sama_2079	0.70	+1.4
2,521,719	+		Sama_2079	0.70	-2.6
2,521,719	+		Sama_2079	0.70	-1.3
2,521,782	+		Sama_2079	0.73	+0.8
2,521,788	-		Sama_2079	0.73	-0.5
2,521,790	-		Sama_2079	0.73	-2.2
2,521,843	+		Sama_2079	0.76	+2.5
2,521,843	+		Sama_2079	0.76	-2.9
2,521,844	-		Sama_2079	0.76	-0.5
2,521,844	-		Sama_2079	0.76	-0.5
2,521,844	-		Sama_2079	0.76	+1.5
2,521,885	+		Sama_2079	0.78	+1.9
2,521,885	+		Sama_2079	0.78	-0.6
2,521,968	-		Sama_2079	0.82	+2.8
2,521,968	-		Sama_2079	0.82	+1.4
2,522,031	+		Sama_2079	0.86	-0.6
2,522,031	+		Sama_2079	0.86	-1.0
2,522,031	+		Sama_2079	0.86	+4.2
2,522,032	-		Sama_2079	0.86	-1.3
2,522,035	+		Sama_2079	0.86	+0.5
2,522,035	+		Sama_2079	0.86	-1.3
2,522,035	+		Sama_2079	0.86	-1.0
2,522,035	+		Sama_2079	0.86	-0.8
2,522,035	+		Sama_2079	0.86	-1.2
2,522,035	+		Sama_2079	0.86	+0.1
2,522,035	+		Sama_2079	0.86	-0.6
2,522,035	+		Sama_2079	0.86	-0.5
2,522,035	+		Sama_2079	0.86	-0.5
2,522,035	+		Sama_2079	0.86	-1.3
2,522,036	-		Sama_2079	0.86	-2.2
2,522,036	-		Sama_2079	0.86	-1.9
2,522,036	-		Sama_2079	0.86	-2.2
2,522,041	+		Sama_2079	0.86	+4.3
2,522,041	+		Sama_2079	0.86	-2.0
2,522,041	+		Sama_2079	0.86	-1.2
2,522,041	+		Sama_2079	0.86	-0.8
2,522,042	-		Sama_2079	0.86	+2.8
2,522,042	-		Sama_2079	0.86	+2.0
2,522,042	-		Sama_2079	0.86	+1.5
2,522,042	-		Sama_2079	0.86	-0.8
2,522,109	+		Sama_2079	0.90	+0.3
2,522,109	+		Sama_2079	0.90	+4.4
2,522,110	-		Sama_2079	0.90	-1.0
2,522,110	-		Sama_2079	0.90	-0.0
2,522,346	-				-1.3
2,522,394	+				-2.8
2,522,394	+				+1.1
2,522,426	+				-1.2
2,522,483	-				+0.9
2,522,483	-				-2.0
2,522,533	+				-0.8
2,522,563	+				-0.0
2,522,564	-				-0.5
2,522,564	-				-0.6
2,522,564	-				-0.7
2,522,651	-		Sama_2080	0.13	-1.3
2,522,732	+		Sama_2080	0.18	-0.7
2,522,928	+		Sama_2080	0.29	-0.0
2,522,928	+		Sama_2080	0.29	-0.0
2,522,928	+		Sama_2080	0.29	-0.6
2,522,928	+		Sama_2080	0.29	+1.5
2,522,929	-		Sama_2080	0.29	-1.2
2,522,929	-		Sama_2080	0.29	-0.6
2,522,930	+		Sama_2080	0.29	-1.3
2,522,987	+		Sama_2080	0.32	-2.8
2,522,988	-		Sama_2080	0.32	-1.8
2,522,988	-		Sama_2080	0.32	-1.9
2,522,988	-		Sama_2080	0.32	-1.0
2,523,018	-		Sama_2080	0.34	-0.5
2,523,028	-		Sama_2080	0.35	-1.4
2,523,028	-		Sama_2080	0.35	-2.4
2,523,028	-		Sama_2080	0.35	-0.5
2,523,072	-		Sama_2080	0.37	-0.5
2,523,132	-		Sama_2080	0.41	-1.6
2,523,146	+		Sama_2080	0.41	-1.9
2,523,178	+		Sama_2080	0.43	-2.3
2,523,178	+		Sama_2080	0.43	-2.0
2,523,179	-		Sama_2080	0.43	+0.5
2,523,179	-		Sama_2080	0.43	-0.9
2,523,212	+		Sama_2080	0.45	+3.1
2,523,212	+		Sama_2080	0.45	+1.5
2,523,278	+		Sama_2080	0.49	-0.5
2,523,278	+		Sama_2080	0.49	-1.3
2,523,278	+		Sama_2080	0.49	-0.2
2,523,279	-		Sama_2080	0.49	-1.0
2,523,279	-		Sama_2080	0.49	+1.5
2,523,279	-		Sama_2080	0.49	-1.8
2,523,412	+		Sama_2080	0.56	-1.3
2,523,412	+		Sama_2080	0.56	-1.0
2,523,412	+		Sama_2080	0.56	-0.6
2,523,412	+		Sama_2080	0.56	+1.0
2,523,412	+		Sama_2080	0.56	-2.0
2,523,412	+		Sama_2080	0.56	-2.6
2,523,412	+		Sama_2080	0.56	-0.5
2,523,413	-		Sama_2080	0.56	+1.3
2,523,413	-		Sama_2080	0.56	-1.3
2,523,413	-		Sama_2080	0.56	+0.5
2,523,413	-		Sama_2080	0.56	-2.3
2,523,413	-		Sama_2080	0.56	-1.3
2,523,413	-		Sama_2080	0.56	-0.7
2,523,413	-		Sama_2080	0.56	-1.0
2,523,531	+		Sama_2080	0.63	-1.6
2,523,532	-		Sama_2080	0.63	-2.8
2,523,649	+		Sama_2080	0.70	-1.1
2,523,650	-		Sama_2080	0.70	-1.1
2,523,661	-		Sama_2080	0.71	-0.6
2,523,725	+		Sama_2080	0.74	-1.8
2,523,725	+		Sama_2080	0.74	-1.8
2,523,725	+		Sama_2080	0.74	-2.0
2,523,726	-		Sama_2080	0.74	-0.5
2,523,726	-		Sama_2080	0.74	-1.5
2,523,726	-		Sama_2080	0.74	-1.0
2,523,726	-		Sama_2080	0.74	-0.5
2,523,726	-		Sama_2080	0.74	-0.8
2,523,726	-		Sama_2080	0.74	-1.4
2,523,816	-		Sama_2080	0.79	-2.8
2,523,833	+		Sama_2080	0.80	-2.0
2,523,833	+		Sama_2080	0.80	-0.8
2,523,834	-		Sama_2080	0.80	+1.1
2,523,834	-		Sama_2080	0.80	+0.4
2,523,834	-		Sama_2080	0.80	-0.5
2,523,834	-		Sama_2080	0.80	+0.4
2,523,834	-		Sama_2080	0.80	-1.0
2,523,834	-		Sama_2080	0.80	-2.2
2,523,834	-		Sama_2080	0.80	-1.3
2,523,851	+		Sama_2080	0.81	-2.2
2,523,903	+		Sama_2080	0.84	-1.4
2,523,904	-		Sama_2080	0.84	-0.2
2,523,932	-		Sama_2080	0.86	-0.2
2,523,932	-		Sama_2080	0.86	-1.5
2,523,932	-		Sama_2080	0.86	-1.0
2,524,015	+				-0.8
2,524,030	-				-1.2
2,524,149	-				-1.0
2,524,149	-				-0.5
2,524,152	+				-1.8
2,524,152	+				-1.3
2,524,152	+				-1.5
2,524,152	+				-2.3
2,524,152	+				+0.1
2,524,152	+				-1.9
2,524,153	-				-0.5
2,524,153	-				-0.2
2,524,179	+				+0.3
2,524,180	-				+0.0
2,524,220	-				-1.9
2,524,221	+				-0.5
2,524,221	+				+4.0
2,524,221	+				+2.0
2,524,221	+				-1.6
2,524,222	-				+3.7
2,524,222	-				-1.5
2,524,252	+				-0.0
2,524,252	+				+0.7
2,524,252	+				+2.4
2,524,252	+				-0.2
2,524,253	-				+1.5
2,524,253	-				+0.2
2,524,258	+				-0.5
2,524,258	+				+0.5
2,524,258	+				-1.6
2,524,258	+				+3.5
2,524,258	+				+1.5
2,524,258	+				+1.2
2,524,258	+				+0.5
2,524,258	+				+3.3
2,524,258	+				+0.5
2,524,258	+				-0.0
2,524,258	+				+1.5
2,524,259	-				-1.5
2,524,259	-				+1.5
2,524,259	-				+2.8
2,524,259	-				-1.2
2,524,259	-				-1.6
2,524,259	-				+2.1
2,524,259	-				-1.5
2,524,291	+	grxA	Sama_2081	0.14	-0.4
2,524,291	+	grxA	Sama_2081	0.14	-2.0
2,524,292	-	grxA	Sama_2081	0.14	-0.5
2,524,386	+	grxA	Sama_2081	0.50	-0.2
2,524,460	+	grxA	Sama_2081	0.79	-1.0
2,524,460	+	grxA	Sama_2081	0.79	-1.6
2,524,460	+	grxA	Sama_2081	0.79	-1.0
2,524,460	+	grxA	Sama_2081	0.79	-1.9
2,524,460	+	grxA	Sama_2081	0.79	+5.8
2,524,460	+	grxA	Sama_2081	0.79	-1.3
2,524,460	+	grxA	Sama_2081	0.79	+2.4
2,524,460	+	grxA	Sama_2081	0.79	+0.5
2,524,460	+	grxA	Sama_2081	0.79	+0.5
2,524,461	-	grxA	Sama_2081	0.79	+1.8
2,524,461	-	grxA	Sama_2081	0.79	-1.8
2,524,486	+	grxA	Sama_2081	0.89	+0.8
2,524,487	-	grxA	Sama_2081	0.89	-1.8
2,524,487	-	grxA	Sama_2081	0.89	+1.9
2,524,537	+				+0.8
2,524,537	+				-0.5
2,524,537	+				-1.3
2,524,537	+				+0.2
2,524,538	-				-0.5
2,524,538	-				-0.0
2,524,538	-				+1.5
2,524,606	+				-2.5
2,524,606	+				-0.1
2,524,708	-				-0.8
2,524,745	-				-1.0
2,524,775	+		Sama_2082	0.11	+2.9
2,524,786	+		Sama_2082	0.11	+3.8
2,524,786	+		Sama_2082	0.11	-0.5
2,524,787	-		Sama_2082	0.11	+0.2
2,524,787	-		Sama_2082	0.11	-0.8
2,524,787	-		Sama_2082	0.11	-0.6
2,524,787	-		Sama_2082	0.11	-2.2
2,524,833	-		Sama_2082	0.15	+0.7
2,525,012	+		Sama_2082	0.29	-0.3
2,525,023	+		Sama_2082	0.29	-1.6
2,525,030	-		Sama_2082	0.30	+0.8
2,525,052	+		Sama_2082	0.32	-1.0
2,525,053	-		Sama_2082	0.32	-2.3
2,525,077	-		Sama_2082	0.34	-0.3
2,525,158	+		Sama_2082	0.40	-1.3
2,525,158	+		Sama_2082	0.40	-0.7