Strain Fitness in Shewanella amazonensis SB2B around Sama_1990

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
2,419,435	+		Sama_1989	0.88	+0.5
2,419,436	-		Sama_1989	0.88	+4.8
2,419,711	+				+4.4
2,419,711	+				+0.3
2,419,736	+				-1.9
2,419,736	+				-2.0
2,419,736	+				-2.4
2,419,736	+				-2.6
2,419,736	+				-0.8
2,419,736	+				+3.7
2,419,737	-				-0.0
2,419,760	+				+1.9
2,419,779	+				+0.8
2,419,844	+				-1.7
2,419,870	+				-0.3
2,419,871	-				-0.5
2,419,901	-				-1.0
2,419,901	-				-1.3
2,419,944	+				-2.3
2,419,944	+				+2.7
2,419,944	+				-2.8
2,419,945	-				-1.2
2,419,978	-				-2.5
2,419,978	-				-0.5
2,419,998	-				-1.3
2,420,013	-				-0.0
2,420,013	-				-0.0
2,420,061	+				-2.2
2,420,071	+				-0.5
2,420,186	+				-1.7
2,420,187	-				+2.8
2,420,187	-				-0.7
2,420,198	-				-1.3
2,420,198	-				+1.1
2,420,200	+				+0.4
2,420,201	-				+0.5
2,420,211	+		Sama_1990	0.10	-1.9
2,420,212	-		Sama_1990	0.10	-1.9
2,420,309	+		Sama_1990	0.17	-2.0
2,420,310	-		Sama_1990	0.17	+2.8
2,420,516	+		Sama_1990	0.30	-0.3
2,420,517	-		Sama_1990	0.30	+3.0
2,420,542	+		Sama_1990	0.32	+0.2
2,420,543	-		Sama_1990	0.32	-0.0
2,420,554	+		Sama_1990	0.32	-1.0
2,420,800	-		Sama_1990	0.48	-1.5
2,420,998	-		Sama_1990	0.61	-0.9
2,420,998	-		Sama_1990	0.61	+2.1
2,421,025	+		Sama_1990	0.63	+1.7
2,421,088	+		Sama_1990	0.67	-2.2
2,421,088	+		Sama_1990	0.67	+1.2
2,421,214	-		Sama_1990	0.75	+3.5
2,421,304	+		Sama_1990	0.80	+1.5
2,421,304	+		Sama_1990	0.80	+2.1
2,421,311	+		Sama_1990	0.81	+0.2
2,421,312	-		Sama_1990	0.81	+1.4
2,421,312	-		Sama_1990	0.81	-1.0
2,421,312	-		Sama_1990	0.81	+3.0
2,421,312	-		Sama_1990	0.81	-0.3
2,421,312	-		Sama_1990	0.81	-0.0
2,421,447	+		Sama_1990	0.90	+3.9
2,421,447	+		Sama_1990	0.90	-2.2
2,421,468	-				-1.0
2,421,472	+				-1.8
2,421,472	+				-1.6
2,421,473	-				-1.8
2,421,673	+				-0.8
2,421,673	+				+3.2
2,421,674	-				-2.5
2,421,747	+				-0.0
2,421,748	-				+1.2
2,421,748	-				-1.6
2,421,748	-				-1.8
2,421,775	-		Sama_1991	0.10	-1.9
2,421,786	+		Sama_1991	0.11	-0.5
2,421,786	+		Sama_1991	0.11	+4.5
2,421,907	+		Sama_1991	0.24	-0.0
2,421,908	-		Sama_1991	0.25	-1.5
2,421,908	-		Sama_1991	0.25	-1.5
2,421,908	-		Sama_1991	0.25	-2.5
2,421,908	-		Sama_1991	0.25	-2.3
2,421,908	-		Sama_1991	0.25	+1.7
2,421,908	-		Sama_1991	0.25	-0.5
2,421,918	-		Sama_1991	0.26	-1.5
2,421,918	-		Sama_1991	0.26	-2.2
2,422,063	+		Sama_1991	0.41	-2.6
2,422,064	-		Sama_1991	0.41	-0.0
2,422,064	-		Sama_1991	0.41	-1.3
2,422,064	-		Sama_1991	0.41	-1.8
2,422,064	-		Sama_1991	0.41	-1.3
2,422,231	+		Sama_1991	0.59	+1.3
2,422,267	+		Sama_1991	0.63	-0.0
2,422,315	+		Sama_1991	0.68	-2.0
2,422,320	+		Sama_1991	0.69	-0.3
2,422,321	-		Sama_1991	0.69	-1.8
2,422,334	+		Sama_1991	0.70	-0.5
2,422,335	-		Sama_1991	0.70	-0.5
2,422,335	-		Sama_1991	0.70	+4.2
2,422,335	-		Sama_1991	0.70	-0.0
2,422,335	-		Sama_1991	0.70	-0.6
2,422,335	-		Sama_1991	0.70	+3.6
2,422,335	-		Sama_1991	0.70	-0.9
2,422,335	-		Sama_1991	0.70	-1.8
2,422,335	-		Sama_1991	0.70	-2.5
2,422,400	-		Sama_1991	0.77	-0.5
2,422,476	-		Sama_1991	0.86	+1.5
2,422,476	-		Sama_1991	0.86	-0.8
2,422,476	-		Sama_1991	0.86	+0.4
2,422,479	+		Sama_1991	0.86	-1.5
2,422,479	+		Sama_1991	0.86	-0.3
2,422,480	-		Sama_1991	0.86	+2.3
2,422,480	-		Sama_1991	0.86	-1.9
2,422,480	-		Sama_1991	0.86	-0.8
2,422,525	+				-0.6
2,422,526	-				+2.8
2,422,533	+				-0.5
2,422,534	-				-0.8
2,422,534	-				+0.5
2,422,534	-				-1.2
2,422,534	-				-0.6
2,422,536	+				+1.6
2,422,537	-				+2.7
2,422,537	-				-0.0
2,422,537	-				-1.7
2,422,578	-				-0.2
2,422,578	-				+0.5
2,422,578	-				-2.2
2,422,578	-				+3.9
2,422,578	-				+2.4
2,422,582	-				-0.0