Strain Fitness in Shewanella amazonensis SB2B around Sama_1941

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
2,367,943	+		Sama_1940	0.73	-1.3
2,367,944	-		Sama_1940	0.73	-0.5
2,367,944	-		Sama_1940	0.73	-1.6
2,367,960	-		Sama_1940	0.74	-1.0
2,368,125	+		Sama_1940	0.82	-2.6
2,368,125	+		Sama_1940	0.82	-1.8
2,368,125	+		Sama_1940	0.82	-1.9
2,368,126	-		Sama_1940	0.82	-1.3
2,368,126	-		Sama_1940	0.82	-1.8
2,368,168	+		Sama_1940	0.84	-0.8
2,368,168	+		Sama_1940	0.84	-2.8
2,368,169	-		Sama_1940	0.84	-2.3
2,368,169	-		Sama_1940	0.84	-2.5
2,368,190	+		Sama_1940	0.85	-1.3
2,368,190	+		Sama_1940	0.85	-0.5
2,368,191	-		Sama_1940	0.85	-1.3
2,368,191	-		Sama_1940	0.85	-1.6
2,368,198	+		Sama_1940	0.86	-0.0
2,368,200	+		Sama_1940	0.86	-1.5
2,368,200	+		Sama_1940	0.86	-0.0
2,368,201	-		Sama_1940	0.86	-2.3
2,368,278	+		Sama_1940	0.90	-1.9
2,368,279	-		Sama_1940	0.90	-1.7
2,368,324	+				-1.4
2,368,325	-				-1.9
2,368,448	+				-2.3
2,368,586	-				-0.9
2,368,586	-				+0.4
2,368,586	-				-1.0
2,368,595	+				-1.6
2,368,596	-				-0.8
2,368,669	-				-2.0
2,368,699	+				-0.3
2,368,700	-				-1.3
2,368,705	+				+1.3
2,368,705	+				-0.3
2,368,705	+				+3.8
2,368,724	+				-1.8
2,368,725	-				-2.6
2,368,784	+				-0.8
2,368,784	+				-2.0
2,368,784	+				-1.9
2,368,784	+				+2.9
2,368,784	+				+1.4
2,368,791	+				+1.4
2,368,916	+				+2.5
2,368,921	+				-2.5
2,368,921	+				-0.8
2,368,921	+				-1.8
2,369,069	+	hisG	Sama_1941	0.14	+3.1
2,369,069	+	hisG	Sama_1941	0.14	+2.1
2,369,070	-	hisG	Sama_1941	0.14	+1.0
2,369,141	-	hisG	Sama_1941	0.22	-0.8
2,369,141	-	hisG	Sama_1941	0.22	-2.2
2,369,146	+	hisG	Sama_1941	0.23	-1.3
2,369,146	+	hisG	Sama_1941	0.23	-1.6
2,369,147	-	hisG	Sama_1941	0.23	-2.4
2,369,147	-	hisG	Sama_1941	0.23	-0.8
2,369,309	+	hisG	Sama_1941	0.41	+2.4
2,369,310	-	hisG	Sama_1941	0.41	-0.8
2,369,432	+	hisG	Sama_1941	0.55	-0.5
2,369,432	+	hisG	Sama_1941	0.55	-1.6
2,369,433	-	hisG	Sama_1941	0.55	-0.0
2,369,433	-	hisG	Sama_1941	0.55	-0.6
2,369,516	+	hisG	Sama_1941	0.64	-2.6
2,369,516	+	hisG	Sama_1941	0.64	+0.5
2,369,517	-	hisG	Sama_1941	0.64	-0.6
2,369,517	-	hisG	Sama_1941	0.64	-0.0
2,369,519	+	hisG	Sama_1941	0.65	-0.5
2,369,532	-	hisG	Sama_1941	0.66	+1.1
2,369,532	-	hisG	Sama_1941	0.66	-1.0
2,369,561	+	hisG	Sama_1941	0.69	-1.2
2,369,561	+	hisG	Sama_1941	0.69	-0.0
2,369,562	-	hisG	Sama_1941	0.69	+0.5
2,369,616	+	hisG	Sama_1941	0.76	-1.3
2,369,616	+	hisG	Sama_1941	0.76	+1.4
2,369,616	+	hisG	Sama_1941	0.76	-1.5
2,369,617	-	hisG	Sama_1941	0.76	+1.7
2,369,692	+	hisG	Sama_1941	0.84	-0.8
2,369,693	-	hisG	Sama_1941	0.84	-0.3
2,369,833	-				-0.6
2,369,863	+				-0.8
2,369,864	-				+2.2
2,369,864	-				-1.9
2,369,864	-				+2.0
2,369,864	-				+0.3
2,369,918	+				+1.0
2,369,919	-				-1.0
2,369,919	-				-2.3
2,370,005	+	hisD	Sama_1942	0.13	+1.1
2,370,068	-	hisD	Sama_1942	0.18	-1.9
2,370,068	-	hisD	Sama_1942	0.18	+0.5
2,370,080	+	hisD	Sama_1942	0.19	-1.2
2,370,081	-	hisD	Sama_1942	0.19	-1.1
2,370,081	-	hisD	Sama_1942	0.19	+0.6
2,370,186	-	hisD	Sama_1942	0.27	-0.8
2,370,216	+	hisD	Sama_1942	0.29	+0.8
2,370,216	+	hisD	Sama_1942	0.29	+1.1
2,370,216	+	hisD	Sama_1942	0.29	+0.2
2,370,217	-	hisD	Sama_1942	0.29	+0.2
2,370,217	-	hisD	Sama_1942	0.29	-1.2
2,370,218	+	hisD	Sama_1942	0.29	-1.3
2,370,218	+	hisD	Sama_1942	0.29	+0.5
2,370,242	+	hisD	Sama_1942	0.31	+0.9
2,370,278	+	hisD	Sama_1942	0.34	+0.2
2,370,290	+	hisD	Sama_1942	0.35	-0.9
2,370,307	+	hisD	Sama_1942	0.36	-0.3
2,370,307	+	hisD	Sama_1942	0.36	-1.0
2,370,339	+	hisD	Sama_1942	0.38	+1.8
2,370,428	-	hisD	Sama_1942	0.45	-2.4
2,370,466	-	hisD	Sama_1942	0.48	-0.9
2,370,466	-	hisD	Sama_1942	0.48	+1.1
2,370,749	+	hisD	Sama_1942	0.70	+1.5
2,370,752	+	hisD	Sama_1942	0.70	-0.0
2,370,753	-	hisD	Sama_1942	0.70	+1.9
2,370,758	+	hisD	Sama_1942	0.70	-1.8
2,370,759	-	hisD	Sama_1942	0.70	-0.5
2,370,759	-	hisD	Sama_1942	0.70	-2.2
2,370,798	+	hisD	Sama_1942	0.73	+3.4
2,370,798	+	hisD	Sama_1942	0.73	-1.0
2,370,798	+	hisD	Sama_1942	0.73	-0.3
2,370,799	-	hisD	Sama_1942	0.73	-1.4
2,370,818	+	hisD	Sama_1942	0.75	-0.3
2,370,819	-	hisD	Sama_1942	0.75	+1.3