Strain Fitness in Shewanella amazonensis SB2B around Sama_1885

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
2,299,183	-				+1.7
2,299,252	+		Sama_1884	0.14	-0.1
2,299,253	-		Sama_1884	0.14	-0.8
2,299,283	-		Sama_1884	0.18	-2.2
2,299,283	-		Sama_1884	0.18	+0.5
2,299,283	-		Sama_1884	0.18	-0.3
2,299,310	+		Sama_1884	0.21	+1.3
2,299,311	-		Sama_1884	0.22	-0.8
2,299,330	+		Sama_1884	0.24	-0.1
2,299,330	+		Sama_1884	0.24	+2.3
2,299,339	+		Sama_1884	0.25	+1.1
2,299,339	+		Sama_1884	0.25	+1.9
2,299,339	+		Sama_1884	0.25	+0.2
2,299,340	-		Sama_1884	0.25	-0.8
2,299,380	+		Sama_1884	0.31	-0.1
2,299,380	+		Sama_1884	0.31	-0.3
2,299,391	-		Sama_1884	0.32	-0.5
2,299,401	+		Sama_1884	0.33	+2.1
2,299,612	+		Sama_1884	0.60	-2.4
2,299,642	-		Sama_1884	0.64	-0.7
2,299,642	-		Sama_1884	0.64	+0.2
2,299,656	+		Sama_1884	0.66	-1.7
2,299,656	+		Sama_1884	0.66	+1.5
2,299,656	+		Sama_1884	0.66	+2.2
2,299,657	-		Sama_1884	0.66	-1.1
2,299,657	-		Sama_1884	0.66	-0.5
2,299,658	+		Sama_1884	0.66	+2.4
2,299,658	+		Sama_1884	0.66	-2.7
2,299,658	+		Sama_1884	0.66	-1.3
2,299,658	+		Sama_1884	0.66	-1.7
2,299,658	+		Sama_1884	0.66	-2.0
2,299,658	+		Sama_1884	0.66	-1.7
2,299,658	+		Sama_1884	0.66	-0.8
2,299,719	+		Sama_1884	0.74	+0.4
2,299,720	-		Sama_1884	0.74	-0.1
2,299,720	-		Sama_1884	0.74	+0.2
2,299,720	-		Sama_1884	0.74	+3.8
2,299,725	-		Sama_1884	0.75	+1.9
2,299,741	+		Sama_1884	0.77	-1.3
2,299,741	+		Sama_1884	0.77	-1.4
2,299,814	-		Sama_1884	0.86	-0.3
2,299,818	-		Sama_1884	0.87	-1.5
2,299,932	+				-1.1
2,299,933	-				+1.5
2,299,950	+				-1.1
2,300,016	+				-0.1
2,300,023	+				+1.4
2,300,026	+				+1.7
2,300,027	-				+0.8
2,300,063	+				-0.8
2,300,150	+				-1.1
2,300,234	+		Sama_1885	0.12	+1.2
2,300,274	+		Sama_1885	0.15	+0.5
2,300,275	-		Sama_1885	0.15	+1.9
2,300,275	-		Sama_1885	0.15	+0.2
2,300,444	+		Sama_1885	0.26	-1.0
2,300,444	+		Sama_1885	0.26	-0.1
2,300,589	+		Sama_1885	0.36	+0.8
2,300,616	+		Sama_1885	0.38	-0.5
2,300,787	+		Sama_1885	0.49	+0.7
2,300,824	+		Sama_1885	0.52	-0.8
2,300,842	+		Sama_1885	0.53	-0.1
2,300,854	+		Sama_1885	0.54	-1.1
2,301,166	+		Sama_1885	0.75	-1.3
2,301,231	+		Sama_1885	0.79	-0.2
2,301,231	+		Sama_1885	0.79	+1.6
2,301,232	-		Sama_1885	0.79	-1.5
2,301,252	-		Sama_1885	0.81	-2.4
2,301,281	+		Sama_1885	0.83	-1.3
2,301,372	-		Sama_1885	0.89	-1.1
2,301,402	+				+0.5
2,301,402	+				-0.5
2,301,402	+				-0.5
2,301,537	+				-0.2
2,301,537	+				-0.4
2,301,628	-				+1.1
2,301,649	-				+2.5
2,301,668	-				-1.9
2,301,668	-				-0.9
2,301,668	-				+0.8
2,301,686	+				-1.2
2,301,686	+				-1.1
2,301,714	+				-1.3
2,301,715	-				-0.9
2,301,769	+				-1.8
2,301,807	+				+0.7
2,301,807	+				-1.1
2,301,807	+				-0.1
2,301,830	+				-1.7
2,301,830	+				+0.2
2,301,830	+				-1.0
2,301,831	-				-0.8
2,301,836	+				+4.3
2,301,836	+				-0.8
2,301,836	+				-0.1
2,301,874	-				+2.8
2,301,898	+				-0.2
2,301,899	-				-0.8
2,301,922	-				-1.2
2,301,930	+				+2.5
2,302,017	-				+0.5
2,302,017	-				+2.2
2,302,017	-				+0.2
2,302,057	+				-0.3
2,302,176	+		Sama_1886	0.30	-0.4
2,302,228	-		Sama_1886	0.40	-1.5
2,302,228	-		Sama_1886	0.40	-1.0
2,302,228	-		Sama_1886	0.40	+2.4
2,302,228	-		Sama_1886	0.40	+2.6
2,302,256	-		Sama_1886	0.45	-1.0
2,302,273	-		Sama_1886	0.48	-1.6
2,302,279	-		Sama_1886	0.49	-2.5
2,302,390	+		Sama_1886	0.70	-0.5
2,302,390	+		Sama_1886	0.70	+0.5
2,302,407	+		Sama_1886	0.74	+1.1
2,302,407	+		Sama_1886	0.74	-0.8
2,302,407	+		Sama_1886	0.74	-1.7
2,302,408	-		Sama_1886	0.74	-1.7
2,302,457	-		Sama_1886	0.83	-0.5
2,302,457	-		Sama_1886	0.83	-0.3
2,302,465	-		Sama_1886	0.85	-1.5