Strain Fitness in Shewanella amazonensis SB2B around Sama_1628

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
1,992,141	-		Sama_1627	0.30	-0.4
1,992,236	-		Sama_1627	0.39	-0.1
1,992,236	-		Sama_1627	0.39	-0.3
1,992,267	-		Sama_1627	0.42	+0.3
1,992,318	-		Sama_1627	0.47	-1.1
1,992,437	+		Sama_1627	0.58	+1.1
1,992,437	+		Sama_1627	0.58	-0.1
1,992,437	+		Sama_1627	0.58	+0.5
1,992,444	+		Sama_1627	0.59	-0.5
1,992,526	+		Sama_1627	0.67	-0.3
1,992,526	+		Sama_1627	0.67	-1.5
1,992,530	-		Sama_1627	0.67	+1.0
1,992,543	-		Sama_1627	0.68	-0.5
1,992,566	+		Sama_1627	0.70	+3.5
1,992,578	+		Sama_1627	0.72	-0.9
1,992,579	-		Sama_1627	0.72	-0.5
1,992,596	+		Sama_1627	0.73	-1.7
1,992,597	-		Sama_1627	0.73	-2.3
1,992,798	-				+1.5
1,992,856	-				-0.5
1,992,856	-				+1.8
1,992,856	-				-1.1
1,992,856	-				+0.9
1,992,856	-				-1.3
1,992,857	+				+1.2
1,992,857	+				-0.9
1,992,857	+				+1.6
1,992,858	-				-1.9
1,992,858	-				+2.7
1,992,866	+				-1.3
1,992,866	+				-1.5
1,992,867	-				-0.5
1,992,870	+				+4.8
1,992,870	+				-2.0
1,992,875	+				-1.3
1,992,875	+				+3.8
1,992,875	+				+2.2
1,992,876	-				-1.5
1,992,955	-				-1.1
1,993,039	+				-0.9
1,993,040	-				-0.5
1,993,148	-	argD	Sama_1628	0.16	-1.5
1,993,148	-	argD	Sama_1628	0.16	-1.0
1,993,194	-	argD	Sama_1628	0.20	+0.2
1,993,200	+	argD	Sama_1628	0.20	-2.0
1,993,200	+	argD	Sama_1628	0.20	-2.4
1,993,200	+	argD	Sama_1628	0.20	+1.0
1,993,200	+	argD	Sama_1628	0.20	-0.3
1,993,201	-	argD	Sama_1628	0.20	+0.5
1,993,266	-	argD	Sama_1628	0.26	-0.6
1,993,280	+	argD	Sama_1628	0.27	+0.5
1,993,280	+	argD	Sama_1628	0.27	-1.5
1,993,281	-	argD	Sama_1628	0.27	+1.3
1,993,281	-	argD	Sama_1628	0.27	+2.3
1,993,281	-	argD	Sama_1628	0.27	-1.7
1,993,332	+	argD	Sama_1628	0.31	-0.3
1,993,333	-	argD	Sama_1628	0.31	-0.4
1,993,352	+	argD	Sama_1628	0.33	+0.5
1,993,436	+	argD	Sama_1628	0.40	+4.7
1,993,437	-	argD	Sama_1628	0.40	-1.4
1,993,437	-	argD	Sama_1628	0.40	+2.6
1,993,437	-	argD	Sama_1628	0.40	-1.3
1,993,437	-	argD	Sama_1628	0.40	+5.3
1,993,464	+	argD	Sama_1628	0.42	-1.1
1,993,464	+	argD	Sama_1628	0.42	+0.9
1,993,465	-	argD	Sama_1628	0.42	-0.3
1,993,465	-	argD	Sama_1628	0.42	+0.1
1,993,465	-	argD	Sama_1628	0.42	-0.8
1,993,465	-	argD	Sama_1628	0.42	-1.0
1,993,465	-	argD	Sama_1628	0.42	-2.1
1,993,470	+	argD	Sama_1628	0.42	-0.3
1,993,471	-	argD	Sama_1628	0.43	+2.0
1,993,471	-	argD	Sama_1628	0.43	-2.7
1,993,471	-	argD	Sama_1628	0.43	-1.4
1,993,471	-	argD	Sama_1628	0.43	-0.7
1,993,502	+	argD	Sama_1628	0.45	+1.5
1,993,551	-	argD	Sama_1628	0.49	+0.5
1,993,627	+	argD	Sama_1628	0.55	-0.1
1,993,628	-	argD	Sama_1628	0.55	-1.5
1,993,669	-	argD	Sama_1628	0.59	-1.1
1,993,744	+	argD	Sama_1628	0.65	-1.0
1,993,795	+	argD	Sama_1628	0.69	-0.1
1,993,795	+	argD	Sama_1628	0.69	+0.5
1,993,796	-	argD	Sama_1628	0.69	+0.6
1,993,796	-	argD	Sama_1628	0.69	-2.2
1,994,124	+				+1.5
1,994,164	+				-0.8
1,994,165	-				-0.1
1,994,165	-				-0.1
1,994,228	-				+3.4
1,994,228	-				+3.9
1,994,238	+				+1.2
1,994,239	-				-1.5
1,994,239	-				-0.3
1,994,241	-				-0.9
1,994,499	-		Sama_1629	0.41	-0.7
1,994,499	-		Sama_1629	0.41	+0.4
1,994,499	-		Sama_1629	0.41	-0.5
1,994,603	+		Sama_1629	0.65	-1.3
1,994,603	+		Sama_1629	0.65	-1.9
1,994,604	-		Sama_1629	0.65	-1.5
1,994,604	-		Sama_1629	0.65	+1.0
1,994,604	-		Sama_1629	0.65	+1.5
1,994,604	-		Sama_1629	0.65	-1.7
1,994,622	-		Sama_1629	0.69	+5.1
1,994,683	+		Sama_1629	0.84	+0.5
1,994,704	-		Sama_1629	0.89	+1.5
1,994,762	+				-2.6
1,994,762	+				-1.0
1,994,762	+				+2.5
1,994,762	+				+1.5
1,994,763	-				-1.1
1,994,763	-				-0.3
1,994,763	-				+2.0
1,994,763	-				-0.5
1,994,763	-				-0.5
1,994,763	-				-0.5
1,994,763	-				+0.9
1,994,920	+		Sama_1630	0.10	+1.0
1,994,921	-		Sama_1630	0.10	-0.3
1,995,002	+		Sama_1630	0.19	+0.8
1,995,067	+		Sama_1630	0.27	+1.1
1,995,106	+		Sama_1630	0.31	-2.0
1,995,120	+		Sama_1630	0.33	+2.6
1,995,121	-		Sama_1630	0.33	-1.0
1,995,121	-		Sama_1630	0.33	+0.5
1,995,121	-		Sama_1630	0.33	+1.5