Strain Fitness in Shewanella amazonensis SB2B around Sama_1571

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
1,914,713	-				-2.0
1,914,713	-				+0.2
1,914,713	-				-1.1
1,914,717	+				-1.5
1,914,733	-				+1.8
1,914,733	-				-1.0
1,914,802	+		Sama_1570	0.12	+1.3
1,914,981	+		Sama_1570	0.32	-3.1
1,914,982	-		Sama_1570	0.32	-0.5
1,914,982	-		Sama_1570	0.32	+1.2
1,915,131	+		Sama_1570	0.48	-2.2
1,915,131	+		Sama_1570	0.48	-1.3
1,915,131	+		Sama_1570	0.48	+0.5
1,915,139	+		Sama_1570	0.49	-0.8
1,915,155	-		Sama_1570	0.51	+0.5
1,915,155	-		Sama_1570	0.51	-1.8
1,915,157	+		Sama_1570	0.51	+2.5
1,915,157	+		Sama_1570	0.51	+1.0
1,915,157	+		Sama_1570	0.51	-0.1
1,915,158	-		Sama_1570	0.51	-2.1
1,915,158	-		Sama_1570	0.51	-0.5
1,915,161	-		Sama_1570	0.52	+3.7
1,915,161	-		Sama_1570	0.52	+0.5
1,915,229	-		Sama_1570	0.59	-0.8
1,915,263	+		Sama_1570	0.63	+0.3
1,915,263	+		Sama_1570	0.63	+2.8
1,915,264	-		Sama_1570	0.63	-0.8
1,915,264	-		Sama_1570	0.63	-0.3
1,915,336	-		Sama_1570	0.71	-0.8
1,915,340	+		Sama_1570	0.71	+2.2
1,915,355	-		Sama_1570	0.73	-2.6
1,915,358	-		Sama_1570	0.73	+1.7
1,915,429	+		Sama_1570	0.81	+0.6
1,915,430	-		Sama_1570	0.81	+1.7
1,915,430	-		Sama_1570	0.81	-0.7
1,915,475	+		Sama_1570	0.86	+0.5
1,915,475	+		Sama_1570	0.86	-2.1
1,915,540	+				-1.3
1,915,541	-				-0.1
1,915,541	-				+2.1
1,915,548	+				-0.8
1,915,609	+				-0.1
1,915,609	+				+3.6
1,915,609	+				-0.5
1,915,609	+				-0.5
1,915,609	+				-2.1
1,915,609	+				-0.8
1,915,610	-				+2.8
1,915,659	+				+0.6
1,915,659	+				+1.5
1,915,660	-				-0.1
1,915,662	+				+1.1
1,915,662	+				+1.9
1,915,662	+				-1.1
1,915,670	-				+0.6
1,915,687	+				+0.5
1,915,737	+				+3.8
1,915,738	-				-2.2
1,915,824	+		Sama_1571	0.14	-2.7
1,915,824	+		Sama_1571	0.14	-1.7
1,915,824	+		Sama_1571	0.14	-1.5
1,915,824	+		Sama_1571	0.14	+1.3
1,915,824	+		Sama_1571	0.14	-2.2
1,915,825	-		Sama_1571	0.14	-2.2
1,915,825	-		Sama_1571	0.14	-2.3
1,915,825	-		Sama_1571	0.14	-0.8
1,915,825	-		Sama_1571	0.14	+0.8
1,915,825	-		Sama_1571	0.14	-1.3
1,915,919	+		Sama_1571	0.26	+2.5
1,915,919	+		Sama_1571	0.26	+1.1
1,915,919	+		Sama_1571	0.26	+1.5
1,915,919	+		Sama_1571	0.26	+2.6
1,915,919	+		Sama_1571	0.26	-1.3
1,915,919	+		Sama_1571	0.26	+2.0
1,915,919	+		Sama_1571	0.26	+2.0
1,915,919	+		Sama_1571	0.26	+0.5
1,915,920	-		Sama_1571	0.26	-1.7
1,915,920	-		Sama_1571	0.26	-1.7
1,915,943	+		Sama_1571	0.29	+3.5
1,915,944	-		Sama_1571	0.29	-2.3
1,915,955	+		Sama_1571	0.31	+0.4
1,915,973	+		Sama_1571	0.33	-1.8
1,916,001	+		Sama_1571	0.37	+4.1
1,916,002	-		Sama_1571	0.37	+0.3
1,916,010	-		Sama_1571	0.38	-0.6
1,916,111	+		Sama_1571	0.50	+0.7
1,916,111	+		Sama_1571	0.50	-1.3
1,916,111	+		Sama_1571	0.50	+1.1
1,916,111	+		Sama_1571	0.50	-1.2
1,916,112	-		Sama_1571	0.51	+4.2
1,916,153	+		Sama_1571	0.56	-2.1
1,916,153	+		Sama_1571	0.56	-0.5
1,916,153	+		Sama_1571	0.56	-1.1
1,916,312	+		Sama_1571	0.76	+0.3
1,916,323	+		Sama_1571	0.77	+3.3
1,916,323	+		Sama_1571	0.77	-0.5
1,916,402	+		Sama_1571	0.87	-0.1
1,916,415	-		Sama_1571	0.89	+2.9
1,916,506	-				-1.8
1,916,510	+				-2.4
1,916,546	+				-2.1
1,916,546	+				+1.9
1,916,546	+				+0.5
1,916,553	-				+2.0
1,916,581	-				+2.1
1,916,606	+				+1.8
1,916,606	+				+1.7
1,916,607	-				-0.5
1,916,617	-				-0.9
1,916,619	+				+1.9
1,916,620	-				+1.1
1,916,620	-				-1.3
1,916,620	-				-1.1
1,916,641	-		Sama_1572	0.10	+0.5
1,916,670	+		Sama_1572	0.18	-1.1
1,916,674	+		Sama_1572	0.19	-1.1
1,916,674	+		Sama_1572	0.19	+0.9
1,916,674	+		Sama_1572	0.19	-0.5
1,916,675	-		Sama_1572	0.19	+0.3
1,916,675	-		Sama_1572	0.19	+2.2
1,916,675	-		Sama_1572	0.19	-0.9
1,916,675	-		Sama_1572	0.19	-2.1
1,916,675	-		Sama_1572	0.19	-1.6
1,916,675	-		Sama_1572	0.19	-0.5
1,916,726	+		Sama_1572	0.34	+0.3
1,916,726	+		Sama_1572	0.34	-0.3
1,916,727	-		Sama_1572	0.34	-0.5
1,916,855	+		Sama_1572	0.69	+4.0
1,916,855	+		Sama_1572	0.69	-1.3
1,916,856	-		Sama_1572	0.70	-1.8
1,916,856	-		Sama_1572	0.70	-1.8
1,916,856	-		Sama_1572	0.70	+1.0
1,916,869	-		Sama_1572	0.73	-2.4
1,916,991	+				+3.1
1,917,057	+		Sama_1573	0.13	+0.0
1,917,058	-		Sama_1573	0.13	-2.3
1,917,059	+		Sama_1573	0.13	-1.5
1,917,060	-		Sama_1573	0.13	-1.5
1,917,064	-		Sama_1573	0.14	+4.3
1,917,064	-		Sama_1573	0.14	+2.9
1,917,081	+		Sama_1573	0.18	-1.8
1,917,081	+		Sama_1573	0.18	-1.7
1,917,092	+		Sama_1573	0.20	-0.8
1,917,092	+		Sama_1573	0.20	-0.7
1,917,093	-		Sama_1573	0.20	+3.7
1,917,162	+		Sama_1573	0.35	-1.5
1,917,163	-		Sama_1573	0.35	-0.4
1,917,163	-		Sama_1573	0.35	-2.1
1,917,214	+		Sama_1573	0.46	-1.4
1,917,242	+		Sama_1573	0.52	-0.2
1,917,243	-		Sama_1573	0.52	-0.1
1,917,310	+		Sama_1573	0.66	-1.1
1,917,367	+		Sama_1573	0.79	-0.0
1,917,460	+				-1.0
1,917,501	+				+1.3
1,917,501	+				+6.4
1,917,501	+				-1.2