Strain Fitness in Shewanella amazonensis SB2B around Sama_1563

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
1,902,094	+				-0.5
1,902,094	+				+1.6
1,902,101	-				-0.8
1,902,105	+				+2.0
1,902,105	+				+0.1
1,902,106	-				-0.8
1,902,106	-				-0.9
1,902,138	-		Sama_1562	0.11	-1.3
1,902,250	-		Sama_1562	0.34	-2.2
1,902,250	-		Sama_1562	0.34	-0.5
1,902,250	-		Sama_1562	0.34	-0.8
1,902,345	+		Sama_1562	0.52	+1.5
1,902,378	+		Sama_1562	0.59	+1.5
1,902,399	-		Sama_1562	0.63	-1.9
1,902,468	+		Sama_1562	0.77	-1.5
1,902,468	+		Sama_1562	0.77	-1.0
1,902,468	+		Sama_1562	0.77	+3.5
1,902,577	-				-1.7
1,902,577	-				-0.5
1,902,587	+				-1.5
1,902,606	-				+1.8
1,902,609	+				+2.5
1,902,609	+				+0.5
1,902,609	+				-0.8
1,902,609	+				+1.6
1,902,610	-				-0.1
1,902,642	+				-0.5
1,902,738	+				-1.1
1,902,738	+				+0.6
1,902,739	-				-2.3
1,902,739	-				-0.7
1,902,741	-				+1.7
1,902,813	-				+0.8
1,902,826	-				-2.3
1,902,884	+				+2.7
1,902,906	+				-1.7
1,902,906	+				+0.1
1,902,906	+				+0.9
1,902,906	+				+0.3
1,902,907	-				-1.7
1,902,907	-				-2.7
1,902,907	-				-0.1
1,902,917	+				+3.4
1,902,917	+				-1.9
1,902,918	-				-0.5
1,902,918	-				+0.2
1,902,918	-				-1.7
1,902,921	+				-0.3
1,902,929	+				+0.2
1,902,929	+				-1.3
1,902,930	-				-1.3
1,902,930	-				-1.6
1,902,930	-				-0.7
1,902,930	-				-1.1
1,902,951	+				+3.1
1,902,951	+				+1.9
1,902,951	+				+2.0
1,902,952	-				-1.2
1,902,953	+				-0.5
1,902,954	-				-1.1
1,902,954	-				+0.3
1,903,055	-				-0.8
1,903,085	+				-0.5
1,903,085	+				+1.7
1,903,085	+				+0.5
1,903,085	+				-0.8
1,903,085	+				+2.5
1,903,086	-				-0.8
1,903,086	-				-0.5
1,903,086	-				-1.3
1,903,086	-				+0.1
1,903,106	+				-0.1
1,903,106	+				+1.0
1,903,106	+				-0.7
1,903,106	+				-1.1
1,903,107	-				-1.3
1,903,256	+				+4.0
1,903,256	+				+1.1
1,903,286	+				+1.8
1,903,287	-				-1.2
1,903,287	-				-0.0
1,903,308	-	cpdB	Sama_1563	0.11	-1.3
1,903,308	-	cpdB	Sama_1563	0.11	-1.9
1,903,308	-	cpdB	Sama_1563	0.11	-2.0
1,903,308	-	cpdB	Sama_1563	0.11	-0.8
1,903,328	+	cpdB	Sama_1563	0.12	-0.1
1,903,329	-	cpdB	Sama_1563	0.12	-0.9
1,903,329	-	cpdB	Sama_1563	0.12	-0.5
1,903,354	-	cpdB	Sama_1563	0.13	+2.8
1,903,469	+	cpdB	Sama_1563	0.18	-1.5
1,903,469	+	cpdB	Sama_1563	0.18	+0.5
1,903,470	-	cpdB	Sama_1563	0.18	-1.3
1,903,470	-	cpdB	Sama_1563	0.18	-1.8
1,903,470	-	cpdB	Sama_1563	0.18	+0.5
1,903,470	-	cpdB	Sama_1563	0.18	+1.1
1,903,471	+	cpdB	Sama_1563	0.18	+1.2
1,903,471	+	cpdB	Sama_1563	0.18	+2.7
1,903,472	-	cpdB	Sama_1563	0.18	+0.9
1,903,472	-	cpdB	Sama_1563	0.18	-0.5
1,903,472	-	cpdB	Sama_1563	0.18	+3.4
1,903,472	-	cpdB	Sama_1563	0.18	+1.6
1,903,472	-	cpdB	Sama_1563	0.18	-2.1
1,903,509	+	cpdB	Sama_1563	0.20	+0.4
1,903,509	+	cpdB	Sama_1563	0.20	+0.8
1,903,580	+	cpdB	Sama_1563	0.24	-0.1
1,903,581	-	cpdB	Sama_1563	0.24	+1.2
1,903,581	-	cpdB	Sama_1563	0.24	-0.4
1,903,610	+	cpdB	Sama_1563	0.25	-1.4
1,903,610	+	cpdB	Sama_1563	0.25	-3.2
1,903,610	+	cpdB	Sama_1563	0.25	+0.5
1,903,611	-	cpdB	Sama_1563	0.25	+1.8
1,903,611	-	cpdB	Sama_1563	0.25	-1.7
1,903,730	-	cpdB	Sama_1563	0.31	-0.5
1,903,751	+	cpdB	Sama_1563	0.32	-2.3
1,903,758	-	cpdB	Sama_1563	0.32	-2.2
1,903,776	+	cpdB	Sama_1563	0.33	+4.5
1,903,808	+	cpdB	Sama_1563	0.34	+0.5
1,903,830	+	cpdB	Sama_1563	0.35	+0.4
1,903,830	+	cpdB	Sama_1563	0.35	-0.8
1,903,830	+	cpdB	Sama_1563	0.35	-1.3
1,903,831	-	cpdB	Sama_1563	0.35	-1.3
1,903,872	+	cpdB	Sama_1563	0.37	-2.1
1,903,872	+	cpdB	Sama_1563	0.37	-2.3
1,903,879	+	cpdB	Sama_1563	0.38	-1.8
1,903,982	+	cpdB	Sama_1563	0.43	+0.3
1,903,982	+	cpdB	Sama_1563	0.43	+0.6
1,903,982	+	cpdB	Sama_1563	0.43	-1.1
1,903,982	+	cpdB	Sama_1563	0.43	-0.8
1,903,982	+	cpdB	Sama_1563	0.43	-0.2
1,903,983	-	cpdB	Sama_1563	0.43	-0.4
1,903,983	-	cpdB	Sama_1563	0.43	-0.1
1,903,983	-	cpdB	Sama_1563	0.43	+0.2
1,904,108	+	cpdB	Sama_1563	0.49	+4.6
1,904,108	+	cpdB	Sama_1563	0.49	+3.1
1,904,108	+	cpdB	Sama_1563	0.49	-1.1
1,904,109	-	cpdB	Sama_1563	0.49	-1.2
1,904,109	-	cpdB	Sama_1563	0.49	-1.1
1,904,132	-	cpdB	Sama_1563	0.50	-0.8
1,904,132	-	cpdB	Sama_1563	0.50	-2.3
1,904,348	+	cpdB	Sama_1563	0.60	+1.1
1,904,348	+	cpdB	Sama_1563	0.60	-2.1
1,904,349	-	cpdB	Sama_1563	0.60	-2.1
1,904,349	-	cpdB	Sama_1563	0.60	-1.3
1,904,349	-	cpdB	Sama_1563	0.60	-0.1
1,904,349	-	cpdB	Sama_1563	0.60	-1.1
1,904,421	+	cpdB	Sama_1563	0.63	+0.1
1,904,421	+	cpdB	Sama_1563	0.63	-0.8
1,904,422	-	cpdB	Sama_1563	0.63	-0.8
1,904,422	-	cpdB	Sama_1563	0.63	+1.8
1,904,424	+	cpdB	Sama_1563	0.64	-2.3
1,904,424	+	cpdB	Sama_1563	0.64	+0.5
1,904,540	-	cpdB	Sama_1563	0.69	-0.5
1,904,551	-	cpdB	Sama_1563	0.70	-0.5
1,904,552	+	cpdB	Sama_1563	0.70	+3.1
1,904,552	+	cpdB	Sama_1563	0.70	+0.9
1,904,615	+	cpdB	Sama_1563	0.73	-0.3
1,904,744	+	cpdB	Sama_1563	0.79	-0.8
1,904,745	-	cpdB	Sama_1563	0.79	+1.0
1,904,749	-	cpdB	Sama_1563	0.79	+3.9
1,904,770	-	cpdB	Sama_1563	0.80	+2.7
1,904,770	-	cpdB	Sama_1563	0.80	-1.5
1,904,780	+	cpdB	Sama_1563	0.80	+1.9
1,904,780	+	cpdB	Sama_1563	0.80	-2.2
1,904,796	+	cpdB	Sama_1563	0.81	-0.2
1,904,804	+	cpdB	Sama_1563	0.82	+0.7
1,904,804	+	cpdB	Sama_1563	0.82	-1.1
1,904,805	-	cpdB	Sama_1563	0.82	-0.5
1,904,805	-	cpdB	Sama_1563	0.82	-0.8
1,904,805	-	cpdB	Sama_1563	0.82	+0.5
1,904,805	-	cpdB	Sama_1563	0.82	+2.0
1,904,842	-	cpdB	Sama_1563	0.83	+1.9
1,904,847	+	cpdB	Sama_1563	0.84	-0.5
1,904,847	+	cpdB	Sama_1563	0.84	+3.2
1,904,848	-	cpdB	Sama_1563	0.84	+1.5
1,904,848	-	cpdB	Sama_1563	0.84	-2.7
1,904,848	-	cpdB	Sama_1563	0.84	+1.2
1,904,849	+	cpdB	Sama_1563	0.84	-0.9
1,904,849	+	cpdB	Sama_1563	0.84	+2.4
1,904,849	+	cpdB	Sama_1563	0.84	+0.5
1,904,849	+	cpdB	Sama_1563	0.84	-1.3
1,904,849	+	cpdB	Sama_1563	0.84	+1.1
1,904,849	+	cpdB	Sama_1563	0.84	-0.2
1,904,850	-	cpdB	Sama_1563	0.84	-2.7
1,904,850	-	cpdB	Sama_1563	0.84	-1.9
1,904,850	-	cpdB	Sama_1563	0.84	-0.9
1,904,890	+	cpdB	Sama_1563	0.86	-1.1
1,904,891	-	cpdB	Sama_1563	0.86	+3.2
1,904,896	+	cpdB	Sama_1563	0.86	-1.0
1,904,897	-	cpdB	Sama_1563	0.86	+2.4
1,904,897	-	cpdB	Sama_1563	0.86	+1.8
1,904,931	+	cpdB	Sama_1563	0.88	-1.8
1,904,981	+	cpdB	Sama_1563	0.90	+1.8
1,904,981	+	cpdB	Sama_1563	0.90	+0.5
1,904,984	+				+1.5
1,904,985	-				-1.7
1,905,040	+				-0.6
1,905,067	-				-1.5
1,905,067	-				+0.5
1,905,067	-				-1.1
1,905,069	+				-0.5
1,905,069	+				+1.5
1,905,145	-				+0.5
1,905,145	-				-0.5
1,905,231	+				-2.3
1,905,231	+				+2.4
1,905,232	-				-0.5
1,905,322	+				-0.1
1,905,323	-				+2.0
1,905,323	-				-0.5
1,905,324	+				-0.8
1,905,324	+				+4.2
1,905,325	-				+0.5
1,905,325	-				+0.2
1,905,384	+				-2.4
1,905,508	+				+0.5
1,905,509	-				-1.1
1,905,605	+				-1.5
1,905,605	+				+2.9
1,905,605	+				-0.4
1,905,606	-				+1.0
1,905,606	-				-1.5
1,905,606	-				-0.1
1,905,611	+				-0.7
1,905,612	-				-0.7
1,905,612	-				+0.5
1,905,612	-				-1.5
1,905,642	+		Sama_1564	0.11	-2.0
1,905,653	+		Sama_1564	0.11	+0.7
1,905,654	-		Sama_1564	0.11	-0.2
1,905,791	+		Sama_1564	0.18	-0.5
1,905,792	-		Sama_1564	0.18	+1.5
1,905,878	+		Sama_1564	0.22	-0.1
1,905,879	-		Sama_1564	0.22	+1.5
1,905,953	+		Sama_1564	0.25	-2.1
1,905,954	-		Sama_1564	0.25	-2.6
1,905,954	-		Sama_1564	0.25	+0.8
1,905,954	-		Sama_1564	0.25	-0.2
1,905,989	+		Sama_1564	0.27	-0.8
1,905,990	-		Sama_1564	0.27	-0.3
1,906,009	-		Sama_1564	0.27	-0.8
1,906,009	-		Sama_1564	0.27	+0.3
1,906,009	-		Sama_1564	0.27	-0.1
1,906,097	+		Sama_1564	0.32	+3.8
1,906,119	+		Sama_1564	0.33	-0.1
1,906,120	-		Sama_1564	0.33	-1.5