Strain Fitness in Shewanella amazonensis SB2B around Sama_1515
Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,842,295 | - | Sama_1514 | 0.75 | +0.9 | |
1,842,363 | + | Sama_1514 | 0.77 | +1.5 | |
1,842,378 | + | Sama_1514 | 0.78 | -2.3 | |
1,842,378 | + | Sama_1514 | 0.78 | -0.1 | |
1,842,453 | + | Sama_1514 | 0.80 | +1.5 | |
1,842,453 | + | Sama_1514 | 0.80 | +0.2 | |
1,842,453 | + | Sama_1514 | 0.80 | -0.1 | |
1,842,554 | + | Sama_1514 | 0.83 | -0.5 | |
1,842,554 | + | Sama_1514 | 0.83 | -0.7 | |
1,842,581 | + | Sama_1514 | 0.84 | -0.7 | |
1,842,746 | + | Sama_1514 | 0.89 | -0.5 | |
1,842,746 | + | Sama_1514 | 0.89 | +2.3 | |
1,842,867 | + | -2.6 | |||
1,843,003 | + | -1.8 | |||
1,843,003 | + | -1.1 | |||
1,843,005 | + | -1.7 | |||
1,843,007 | + | -1.5 | |||
1,843,021 | + | -0.1 | |||
1,843,021 | + | -1.2 | |||
1,843,026 | + | -0.1 |
Or see this region's nucleotide sequence