Strain Fitness in Shewanella amazonensis SB2B around Sama_1466

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
1,774,812	+				+3.3
1,774,813	-				-1.9
1,774,832	-				-0.7
1,774,914	+				-1.8
1,774,914	+				-0.7
1,774,992	+				-0.5
1,774,992	+				+2.8
1,774,992	+				+0.6
1,775,007	+				-1.1
1,775,007	+				+2.2
1,775,053	+				-0.7
1,775,053	+				+1.5
1,775,053	+				+2.5
1,775,053	+				+0.3
1,775,053	+				+1.2
1,775,054	-				+1.7
1,775,093	+				-0.8
1,775,094	-				+1.0
1,775,129	+		Sama_1465	0.13	+0.5
1,775,216	+		Sama_1465	0.27	-1.3
1,775,216	+		Sama_1465	0.27	+2.7
1,775,216	+		Sama_1465	0.27	+2.2
1,775,217	-		Sama_1465	0.27	-2.2
1,775,225	-		Sama_1465	0.28	+1.8
1,775,225	-		Sama_1465	0.28	-0.8
1,775,292	+		Sama_1465	0.39	-0.5
1,775,293	-		Sama_1465	0.39	-1.3
1,775,319	+		Sama_1465	0.43	-0.4
1,775,320	-		Sama_1465	0.43	-0.2
1,775,325	+		Sama_1465	0.44	-1.3
1,775,431	+		Sama_1465	0.61	-1.8
1,775,432	-		Sama_1465	0.62	-0.7
1,775,667	-				-2.0
1,775,668	+				+0.8
1,775,669	-				-1.3
1,775,669	-				-1.5
1,775,669	-				+1.0
1,775,696	+				-2.2
1,775,696	+				+0.7
1,775,742	+				-0.7
1,775,776	+				-1.3
1,775,777	-				-0.8
1,775,777	-				-1.3
1,775,812	-				-2.0
1,775,906	+		Sama_1466	0.31	-1.7
1,775,906	+		Sama_1466	0.31	-2.2
1,775,906	+		Sama_1466	0.31	-0.8
1,775,909	+		Sama_1466	0.32	-1.3
1,775,909	+		Sama_1466	0.32	-0.7
1,775,978	-		Sama_1466	0.49	+1.5
1,776,017	+		Sama_1466	0.58	-1.9
1,776,018	-		Sama_1466	0.58	-1.3
1,776,018	-		Sama_1466	0.58	-1.6
1,776,018	-		Sama_1466	0.58	+1.5
1,776,069	+		Sama_1466	0.71	-0.1
1,776,100	+		Sama_1466	0.78	+1.5
1,776,167	+				+1.0
1,776,168	-				-0.8
1,776,188	+				-0.5
1,776,188	+				-0.1
1,776,188	+				-3.5
1,776,188	+				-2.8
1,776,188	+				+0.8
1,776,188	+				+1.7
1,776,189	-				-0.7
1,776,189	-				-0.7
1,776,189	-				-1.3
1,776,237	-				-0.5
1,776,256	+				-0.3
1,776,257	-				-0.3
1,776,273	+				-2.0
1,776,274	-				+1.0
1,776,274	-				-1.1
1,776,274	-				+1.3
1,776,276	-				+2.5
1,776,281	+				-1.2
1,776,282	-				-0.8
1,776,360	+				-2.5
1,776,360	+				-2.3
1,776,361	-				-1.9
1,776,379	+				-1.3
1,776,380	-				+2.4
1,776,385	+				+0.3
1,776,385	+				+5.0
1,776,385	+				-2.6
1,776,385	+				+2.1
1,776,386	-				+4.6
1,776,386	-				+1.5
1,776,386	-				+1.0
1,776,394	+				-0.9
1,776,395	-				-0.3
1,776,422	+				+0.6
1,776,423	-				-0.5
1,776,451	+		Sama_1467	0.11	-0.8
1,776,451	+		Sama_1467	0.11	+0.8
1,776,452	-		Sama_1467	0.11	-1.3
1,776,452	-		Sama_1467	0.11	+3.1
1,776,452	-		Sama_1467	0.11	-2.0
1,776,452	-		Sama_1467	0.11	-2.7
1,776,512	+		Sama_1467	0.27	-1.4
1,776,557	+		Sama_1467	0.39	-2.1
1,776,579	+		Sama_1467	0.45	+1.6
1,776,787	+				+0.4
1,776,825	+				+2.1
1,776,827	+				+1.0
1,776,853	+				-1.8
1,776,876	+				-1.5
1,776,876	+				+1.2
1,776,876	+				-1.9
1,776,877	-				-0.1
1,776,883	+				+0.8
1,776,908	+				-0.9
1,776,909	-				-0.1
1,777,081	+		Sama_1468	0.26	-0.1
1,777,081	+		Sama_1468	0.26	-0.5
1,777,081	+		Sama_1468	0.26	+0.2
1,777,081	+		Sama_1468	0.26	+1.5
1,777,089	+		Sama_1468	0.28	-1.6