Strain Fitness in Shewanella amazonensis SB2B around Sama_1116

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
1,365,867	+		Sama_1115	0.87	-1.2
1,365,867	+		Sama_1115	0.87	+0.0
1,365,868	-		Sama_1115	0.87	-2.4
1,365,868	-		Sama_1115	0.87	-2.7
1,365,868	-		Sama_1115	0.87	-2.0
1,365,872	-		Sama_1115	0.87	-1.2
1,365,962	+		Sama_1115	0.88	+0.3
1,365,980	-		Sama_1115	0.89	-0.5
1,366,071	+		Sama_1115	0.90	-0.4
1,366,071	+		Sama_1115	0.90	-0.3
1,366,071	+		Sama_1115	0.90	-1.2
1,366,071	+		Sama_1115	0.90	-0.5
1,366,071	+		Sama_1115	0.90	-1.7
1,366,071	+		Sama_1115	0.90	-0.7
1,366,071	+		Sama_1115	0.90	-1.4
1,366,071	+		Sama_1115	0.90	-2.2
1,366,071	+		Sama_1115	0.90	+0.0
1,366,071	+		Sama_1115	0.90	+0.4
1,366,072	-		Sama_1115	0.90	-2.4
1,366,072	-		Sama_1115	0.90	-1.2
1,366,072	-		Sama_1115	0.90	-0.0
1,366,072	-		Sama_1115	0.90	-1.3
1,366,072	-		Sama_1115	0.90	-0.6
1,366,072	-		Sama_1115	0.90	-0.7
1,366,072	-		Sama_1115	0.90	+0.0
1,366,072	-		Sama_1115	0.90	+0.0
1,366,072	-		Sama_1115	0.90	-0.4
1,366,072	-		Sama_1115	0.90	-1.5
1,366,077	+		Sama_1115	0.90	-1.4
1,366,077	+		Sama_1115	0.90	+1.3
1,366,077	+		Sama_1115	0.90	-2.1
1,366,093	+				-1.0
1,366,204	+				+1.2
1,366,249	+				-1.8
1,366,290	+				+5.0
1,366,290	+				-1.6
1,366,290	+				-2.3
1,366,290	+				+0.6
1,366,290	+				-1.4
1,366,291	-				+1.3
1,366,291	-				+0.6
1,366,291	-				-1.6
1,366,291	-				+0.0
1,366,291	-				-2.3
1,366,291	-				-0.4
1,366,375	-				-1.4
1,366,427	+				+0.2
1,366,427	+				+0.0
1,366,547	-				-1.7
1,366,547	-				-2.4
1,366,610	-				-2.0
1,366,614	+				-1.7
1,366,615	-				-1.1
1,366,650	+				+5.6
1,366,687	+				-0.7
1,366,688	-				+1.6
1,366,712	-				-1.1
1,366,712	-				-0.4
1,366,801	+				-2.0
1,366,801	+				-1.2
1,366,934	+		Sama_1116	0.11	+1.1
1,366,934	+		Sama_1116	0.11	-0.4
1,366,935	-		Sama_1116	0.12	-0.1
1,366,935	-		Sama_1116	0.12	+0.3
1,366,935	-		Sama_1116	0.12	-3.8
1,366,992	+		Sama_1116	0.19	-0.4
1,366,993	-		Sama_1116	0.19	+2.8
1,366,993	-		Sama_1116	0.19	-0.6
1,366,993	-		Sama_1116	0.19	+4.8
1,366,995	-		Sama_1116	0.19	-1.7
1,366,995	-		Sama_1116	0.19	+1.8
1,366,995	-		Sama_1116	0.19	+1.9
1,367,043	+		Sama_1116	0.25	-1.2
1,367,051	+		Sama_1116	0.26	+1.6
1,367,051	+		Sama_1116	0.26	-2.3
1,367,051	+		Sama_1116	0.26	-1.8
1,367,051	+		Sama_1116	0.26	-1.2
1,367,052	-		Sama_1116	0.26	+0.9
1,367,052	-		Sama_1116	0.26	+2.2
1,367,052	-		Sama_1116	0.26	-1.4
1,367,052	-		Sama_1116	0.26	-1.6
1,367,052	-		Sama_1116	0.26	-1.8
1,367,093	+		Sama_1116	0.31	+0.6
1,367,187	+		Sama_1116	0.42	-2.0
1,367,187	+		Sama_1116	0.42	-0.4
1,367,188	-		Sama_1116	0.42	-3.0
1,367,204	+		Sama_1116	0.44	-1.6
1,367,204	+		Sama_1116	0.44	-1.6
1,367,205	-		Sama_1116	0.45	-0.4
1,367,253	+		Sama_1116	0.50	-1.8
1,367,254	-		Sama_1116	0.51	-2.6
1,367,280	+		Sama_1116	0.54	-1.1
1,367,280	+		Sama_1116	0.54	-2.3
1,367,281	-		Sama_1116	0.54	-1.8
1,367,281	-		Sama_1116	0.54	-2.3
1,367,352	+		Sama_1116	0.63	+0.4
1,367,352	+		Sama_1116	0.63	+2.5
1,367,353	-		Sama_1116	0.63	-1.7
1,367,353	-		Sama_1116	0.63	-2.7
1,367,353	-		Sama_1116	0.63	+0.0
1,367,353	-		Sama_1116	0.63	-1.6
1,367,402	+		Sama_1116	0.69	-1.0
1,367,402	+		Sama_1116	0.69	-0.8
1,367,402	+		Sama_1116	0.69	-0.7
1,367,403	-		Sama_1116	0.69	-0.2
1,367,403	-		Sama_1116	0.69	-0.4
1,367,403	-		Sama_1116	0.69	+0.6
1,367,406	+		Sama_1116	0.69	-0.1
1,367,406	+		Sama_1116	0.69	-0.7
1,367,406	+		Sama_1116	0.69	+0.0
1,367,407	-		Sama_1116	0.69	+0.0
1,367,423	+		Sama_1116	0.71	-0.7
1,367,424	-		Sama_1116	0.71	-1.0
1,367,424	-		Sama_1116	0.71	-1.6
1,367,424	-		Sama_1116	0.71	+1.8
1,367,424	-		Sama_1116	0.71	+1.6
1,367,526	+		Sama_1116	0.84	+1.6
1,367,526	+		Sama_1116	0.84	-1.6
1,367,527	-		Sama_1116	0.84	+2.4
1,367,527	-		Sama_1116	0.84	-1.6
1,367,646	+				+0.3
1,367,681	+				-1.0
1,367,682	-				-0.8
1,367,682	-				-1.2
1,367,706	-				-1.0
1,367,783	-				+0.0
1,367,850	-				+0.4
1,367,869	+				+0.9
1,367,869	+				-1.3
1,367,869	+				-1.6
1,367,900	-				+3.3
1,367,916	-				-0.7
1,367,948	+				-1.5
1,367,948	+				+0.7
1,367,949	-				-0.8
1,367,956	+				+1.1
1,367,956	+				+1.1
1,367,978	+				-1.4
1,368,001	+		Sama_1117	0.14	-1.0
1,368,002	-		Sama_1117	0.15	-3.0
1,368,014	+		Sama_1117	0.18	+2.7
1,368,015	-		Sama_1117	0.18	-0.2
1,368,162	+		Sama_1117	0.59	+1.0
1,368,215	+		Sama_1117	0.74	-1.1
1,368,215	+		Sama_1117	0.74	-1.0
1,368,215	+		Sama_1117	0.74	-0.7
1,368,215	+		Sama_1117	0.74	-1.0
1,368,216	-		Sama_1117	0.74	-1.0
1,368,216	-		Sama_1117	0.74	-1.2
1,368,216	-		Sama_1117	0.74	-1.2
1,368,218	+		Sama_1117	0.75	+2.4
1,368,224	+		Sama_1117	0.76	-0.7
1,368,225	-		Sama_1117	0.77	+1.6
1,368,225	-		Sama_1117	0.77	-0.4
1,368,261	+		Sama_1117	0.87	-1.4
1,368,261	+		Sama_1117	0.87	+0.6
1,368,261	+		Sama_1117	0.87	+0.5
1,368,261	+		Sama_1117	0.87	+3.2
1,368,261	+		Sama_1117	0.87	-1.7
1,368,262	-		Sama_1117	0.87	+0.2
1,368,262	-		Sama_1117	0.87	-2.7
1,368,285	-				-1.4
1,368,306	+				-1.4
1,368,306	+				+3.1
1,368,307	-				+1.3
1,368,307	-				-0.2
1,368,314	+				+1.8
1,368,315	-				+0.8
1,368,377	+				-0.1
1,368,377	+				+1.6
1,368,377	+				-1.2
1,368,378	-				-0.2
1,368,378	-				-0.6
1,368,378	-				-1.3
1,368,380	-				+0.6
1,368,398	+				-2.6
1,368,398	+				-2.2
1,368,399	-				-1.0
1,368,399	-				+0.0
1,368,399	-				+2.7
1,368,486	-				-2.2
1,368,529	+				-0.8
1,368,529	+				-1.2
1,368,530	-				-2.2
1,368,530	-				+1.4
1,368,602	+				+3.2
1,368,602	+				-0.4
1,368,602	+				+0.7
1,368,603	-				+1.3
1,368,603	-				-1.7
1,368,603	-				+2.0
1,368,603	-				-1.4
1,368,603	-				+2.9
1,368,603	-				+1.6
1,368,603	-				+1.9
1,368,603	-				+3.4
1,368,629	-		Sama_1118	0.10	-0.3
1,368,629	-		Sama_1118	0.10	+1.1
1,368,656	+		Sama_1118	0.11	+0.0