Strain Fitness in Shewanella amazonensis SB2B around Sama_1091

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1089 and Sama_1090 are separated by 19 nucleotidesSama_1090 and Sama_1091 are separated by 100 nucleotidesSama_1091 and Sama_1092 are separated by 202 nucleotides Sama_1089: Sama_1089 - TetR family transcriptional regulator (RefSeq), at 1,316,410 to 1,316,982 _1089 Sama_1090: Sama_1090 - hypothetical protein (RefSeq), at 1,317,002 to 1,317,673 _1090 Sama_1091: Sama_1091 - PhnA protein (RefSeq), at 1,317,774 to 1,318,340 _1091 Sama_1092: Sama_1092 - hypothetical protein (RefSeq), at 1,318,543 to 1,319,559 _1092 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1317.033 kb on + strandat 1317.034 kb on - strandat 1317.034 kb on - strandat 1317.159 kb on - strand, within Sama_1090at 1317.255 kb on + strand, within Sama_1090at 1317.256 kb on - strand, within Sama_1090at 1317.256 kb on - strand, within Sama_1090at 1317.355 kb on + strand, within Sama_1090at 1317.356 kb on - strand, within Sama_1090at 1317.363 kb on + strand, within Sama_1090at 1317.363 kb on + strand, within Sama_1090at 1317.363 kb on + strand, within Sama_1090at 1317.364 kb on - strand, within Sama_1090at 1317.364 kb on - strand, within Sama_1090at 1317.429 kb on + strand, within Sama_1090at 1317.429 kb on + strand, within Sama_1090at 1317.430 kb on - strand, within Sama_1090at 1317.430 kb on - strand, within Sama_1090at 1317.430 kb on - strand, within Sama_1090at 1317.430 kb on - strand, within Sama_1090at 1317.439 kb on + strand, within Sama_1090at 1317.440 kb on - strand, within Sama_1090at 1317.440 kb on - strand, within Sama_1090at 1317.440 kb on - strand, within Sama_1090at 1317.440 kb on - strand, within Sama_1090at 1317.531 kb on - strand, within Sama_1090at 1317.554 kb on + strand, within Sama_1090at 1317.554 kb on + strand, within Sama_1090at 1317.588 kb on + strand, within Sama_1090at 1317.588 kb on + strand, within Sama_1090at 1317.588 kb on + strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.589 kb on - strand, within Sama_1090at 1317.625 kb on + strandat 1317.678 kb on + strandat 1317.678 kb on + strandat 1317.678 kb on + strandat 1317.678 kb on + strandat 1317.678 kb on + strandat 1317.679 kb on - strandat 1317.756 kb on + strandat 1317.989 kb on - strand, within Sama_1091at 1317.994 kb on + strand, within Sama_1091at 1317.994 kb on + strand, within Sama_1091at 1317.994 kb on + strand, within Sama_1091at 1317.995 kb on - strand, within Sama_1091at 1318.007 kb on + strand, within Sama_1091at 1318.007 kb on + strand, within Sama_1091at 1318.008 kb on - strand, within Sama_1091at 1318.055 kb on + strand, within Sama_1091at 1318.055 kb on + strand, within Sama_1091at 1318.055 kb on + strand, within Sama_1091at 1318.056 kb on - strand, within Sama_1091at 1318.062 kb on + strand, within Sama_1091at 1318.062 kb on + strand, within Sama_1091at 1318.062 kb on + strand, within Sama_1091at 1318.063 kb on - strand, within Sama_1091at 1318.063 kb on - strand, within Sama_1091at 1318.063 kb on - strand, within Sama_1091at 1318.063 kb on - strand, within Sama_1091at 1318.063 kb on - strand, within Sama_1091at 1318.247 kb on + strand, within Sama_1091at 1318.248 kb on - strand, within Sama_1091at 1318.248 kb on - strand, within Sama_1091at 1318.248 kb on - strand, within Sama_1091at 1318.291 kb on + strandat 1318.311 kb on - strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.323 kb on + strandat 1318.324 kb on - strandat 1318.324 kb on - strandat 1318.328 kb on + strandat 1318.328 kb on + strandat 1318.329 kb on - strandat 1318.394 kb on - strandat 1318.400 kb on + strandat 1318.416 kb on - strandat 1318.431 kb on + strandat 1318.431 kb on + strandat 1318.431 kb on + strandat 1318.431 kb on + strandat 1318.431 kb on + strandat 1318.431 kb on + strandat 1318.432 kb on - strandat 1318.432 kb on - strandat 1318.435 kb on + strandat 1318.435 kb on + strandat 1318.435 kb on + strandat 1318.435 kb on + strandat 1318.435 kb on + strandat 1318.435 kb on + strandat 1318.435 kb on + strandat 1318.436 kb on - strandat 1318.436 kb on - strandat 1318.436 kb on - strandat 1318.458 kb on - strandat 1318.513 kb on + strandat 1318.522 kb on + strandat 1318.542 kb on + strandat 1318.543 kb on - strandat 1318.543 kb on - strandat 1318.636 kb on + strandat 1318.636 kb on + strandat 1318.636 kb on + strandat 1318.636 kb on + strandat 1318.645 kb on - strand, within Sama_1092at 1318.670 kb on + strand, within Sama_1092at 1318.670 kb on + strand, within Sama_1092at 1318.670 kb on + strand, within Sama_1092at 1318.671 kb on - strand, within Sama_1092at 1318.671 kb on - strand, within Sama_1092at 1318.671 kb on - strand, within Sama_1092at 1318.770 kb on + strand, within Sama_1092at 1318.771 kb on - strand, within Sama_1092at 1318.771 kb on - strand, within Sama_1092at 1318.789 kb on - strand, within Sama_1092at 1318.795 kb on - strand, within Sama_1092at 1318.963 kb on - strand, within Sama_1092at 1319.019 kb on + strand, within Sama_1092at 1319.019 kb on + strand, within Sama_1092at 1319.020 kb on - strand, within Sama_1092at 1319.022 kb on + strand, within Sama_1092at 1319.023 kb on - strand, within Sama_1092at 1319.076 kb on + strand, within Sama_1092at 1319.077 kb on - strand, within Sama_1092at 1319.077 kb on - strand, within Sama_1092at 1319.077 kb on - strand, within Sama_1092at 1319.097 kb on + strand, within Sama_1092at 1319.098 kb on - strand, within Sama_1092at 1319.139 kb on + strand, within Sama_1092at 1319.139 kb on + strand, within Sama_1092at 1319.139 kb on + strand, within Sama_1092at 1319.140 kb on - strand, within Sama_1092at 1319.140 kb on - strand, within Sama_1092at 1319.146 kb on + strand, within Sama_1092at 1319.147 kb on - strand, within Sama_1092at 1319.249 kb on + strand, within Sama_1092at 1319.288 kb on - strand, within Sama_1092at 1319.294 kb on + strand, within Sama_1092

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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1,317,033 + -2.1
1,317,034 - +2.1
1,317,034 - +0.2
1,317,159 - Sama_1090 0.23 +0.2
1,317,255 + Sama_1090 0.38 -3.0
1,317,256 - Sama_1090 0.38 -0.4
1,317,256 - Sama_1090 0.38 -1.8
1,317,355 + Sama_1090 0.53 +1.8
1,317,356 - Sama_1090 0.53 -0.1
1,317,363 + Sama_1090 0.54 +0.6
1,317,363 + Sama_1090 0.54 +1.0
1,317,363 + Sama_1090 0.54 -1.2
1,317,364 - Sama_1090 0.54 +0.6
1,317,364 - Sama_1090 0.54 -1.0
1,317,429 + Sama_1090 0.64 -1.6
1,317,429 + Sama_1090 0.64 -2.3
1,317,430 - Sama_1090 0.64 +3.3
1,317,430 - Sama_1090 0.64 -1.0
1,317,430 - Sama_1090 0.64 -0.2
1,317,430 - Sama_1090 0.64 -1.5
1,317,439 + Sama_1090 0.65 +1.5
1,317,440 - Sama_1090 0.65 -0.3
1,317,440 - Sama_1090 0.65 -0.4
1,317,440 - Sama_1090 0.65 -0.3
1,317,440 - Sama_1090 0.65 -0.5
1,317,531 - Sama_1090 0.79 -3.1
1,317,554 + Sama_1090 0.82 -1.4
1,317,554 + Sama_1090 0.82 +1.3
1,317,588 + Sama_1090 0.87 -1.8
1,317,588 + Sama_1090 0.87 +1.0
1,317,588 + Sama_1090 0.87 +4.5
1,317,589 - Sama_1090 0.87 -0.4
1,317,589 - Sama_1090 0.87 -3.0
1,317,589 - Sama_1090 0.87 -1.5
1,317,589 - Sama_1090 0.87 -2.0
1,317,589 - Sama_1090 0.87 -0.7
1,317,589 - Sama_1090 0.87 -1.6
1,317,589 - Sama_1090 0.87 +0.0
1,317,589 - Sama_1090 0.87 -1.6
1,317,589 - Sama_1090 0.87 -1.1
1,317,625 + +0.6
1,317,678 + -1.0
1,317,678 + -1.1
1,317,678 + -2.1
1,317,678 + -2.1
1,317,678 + +0.9
1,317,679 - -0.4
1,317,756 + -0.4
1,317,989 - Sama_1091 0.38 +5.2
1,317,994 + Sama_1091 0.39 -0.6
1,317,994 + Sama_1091 0.39 -1.8
1,317,994 + Sama_1091 0.39 -0.9
1,317,995 - Sama_1091 0.39 -1.5
1,318,007 + Sama_1091 0.41 -2.6
1,318,007 + Sama_1091 0.41 -1.2
1,318,008 - Sama_1091 0.41 -3.0
1,318,055 + Sama_1091 0.50 +0.0
1,318,055 + Sama_1091 0.50 +0.0
1,318,055 + Sama_1091 0.50 -0.2
1,318,056 - Sama_1091 0.50 +0.6
1,318,062 + Sama_1091 0.51 -0.7
1,318,062 + Sama_1091 0.51 -2.2
1,318,062 + Sama_1091 0.51 +0.3
1,318,063 - Sama_1091 0.51 +0.0
1,318,063 - Sama_1091 0.51 -0.1
1,318,063 - Sama_1091 0.51 +1.3
1,318,063 - Sama_1091 0.51 -1.0
1,318,063 - Sama_1091 0.51 +0.0
1,318,247 + Sama_1091 0.83 -2.3
1,318,248 - Sama_1091 0.84 -2.9
1,318,248 - Sama_1091 0.84 -2.5
1,318,248 - Sama_1091 0.84 +1.1
1,318,291 + -1.4
1,318,311 - +1.5
1,318,323 + -0.3
1,318,323 + -0.7
1,318,323 + -1.6
1,318,323 + -0.4
1,318,323 + -0.2
1,318,323 + +0.0
1,318,323 + +0.8
1,318,323 + +0.7
1,318,323 + +0.0
1,318,324 - -1.1
1,318,324 - -1.6
1,318,328 + -1.2
1,318,328 + +3.5
1,318,329 - +2.3
1,318,394 - +2.6
1,318,400 + +0.1
1,318,416 - -1.2
1,318,431 + -3.5
1,318,431 + +0.6
1,318,431 + -0.4
1,318,431 + -2.6
1,318,431 + -0.7
1,318,431 + -2.1
1,318,432 - -1.4
1,318,432 - -1.4
1,318,435 + -0.6
1,318,435 + +2.7
1,318,435 + +1.4
1,318,435 + -0.4
1,318,435 + -2.0
1,318,435 + -0.8
1,318,435 + -1.7
1,318,436 - -1.4
1,318,436 - -0.4
1,318,436 - +0.0
1,318,458 - -1.4
1,318,513 + -1.5
1,318,522 + +0.0
1,318,542 + -1.2
1,318,543 - +0.8
1,318,543 - +1.0
1,318,636 + -3.2
1,318,636 + +0.8
1,318,636 + -1.4
1,318,636 + -2.0
1,318,645 - Sama_1092 0.10 -1.2
1,318,670 + Sama_1092 0.12 +1.2
1,318,670 + Sama_1092 0.12 +0.4
1,318,670 + Sama_1092 0.12 -1.4
1,318,671 - Sama_1092 0.13 -0.4
1,318,671 - Sama_1092 0.13 -0.6
1,318,671 - Sama_1092 0.13 +1.0
1,318,770 + Sama_1092 0.22 +1.6
1,318,771 - Sama_1092 0.22 -1.5
1,318,771 - Sama_1092 0.22 -1.4
1,318,789 - Sama_1092 0.24 +0.8
1,318,795 - Sama_1092 0.25 -1.7
1,318,963 - Sama_1092 0.41 +2.1
1,319,019 + Sama_1092 0.47 -1.4
1,319,019 + Sama_1092 0.47 -0.7
1,319,020 - Sama_1092 0.47 -1.6
1,319,022 + Sama_1092 0.47 -1.6
1,319,023 - Sama_1092 0.47 +2.0
1,319,076 + Sama_1092 0.52 +3.9
1,319,077 - Sama_1092 0.53 +1.8
1,319,077 - Sama_1092 0.53 +2.6
1,319,077 - Sama_1092 0.53 +4.3
1,319,097 + Sama_1092 0.54 -0.0
1,319,098 - Sama_1092 0.55 -0.6
1,319,139 + Sama_1092 0.59 -0.5
1,319,139 + Sama_1092 0.59 +1.5
1,319,139 + Sama_1092 0.59 -0.6
1,319,140 - Sama_1092 0.59 -2.3
1,319,140 - Sama_1092 0.59 -0.3
1,319,146 + Sama_1092 0.59 +0.2
1,319,147 - Sama_1092 0.59 +0.4
1,319,249 + Sama_1092 0.69 +0.7
1,319,288 - Sama_1092 0.73 -0.1
1,319,294 + Sama_1092 0.74 +0.3

Or see this region's nucleotide sequence