Strain Fitness in Shewanella amazonensis SB2B around Sama_0772

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0770 and Sama_0771 are separated by 7 nucleotidesSama_0771 and Sama_0772 are separated by 95 nucleotidesSama_0772 and Sama_0773 are separated by 1 nucleotidesSama_0773 and Sama_0774 are separated by 47 nucleotides Sama_0770: Sama_0770 - aromatic acid decarboxylase (RefSeq), at 954,211 to 954,852 _0770 Sama_0771: Sama_0771 - hypoxanthine phosphoribosyltransferase (RefSeq), at 954,860 to 955,390 _0771 Sama_0772: Sama_0772 - ABC transporter, ATP-binding protein (RefSeq), at 955,486 to 956,445 _0772 Sama_0773: Sama_0773 - ABC-type polysaccharide/polyol phosphate export systems permease component (RefSeq), at 956,447 to 957,217 _0773 Sama_0774: Sama_0774 - hypothetical protein (RefSeq), at 957,265 to 957,765 _0774 Position (kb) 955 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 954.814 kb on + strandat 954.814 kb on + strandat 954.815 kb on - strandat 954.856 kb on + strandat 954.857 kb on - strandat 954.857 kb on - strandat 954.931 kb on + strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 954.945 kb on - strand, within Sama_0771at 955.048 kb on + strand, within Sama_0771at 955.048 kb on + strand, within Sama_0771at 955.049 kb on - strand, within Sama_0771at 955.064 kb on + strand, within Sama_0771at 955.064 kb on + strand, within Sama_0771at 955.065 kb on - strand, within Sama_0771at 955.065 kb on - strand, within Sama_0771at 955.144 kb on + strand, within Sama_0771at 955.160 kb on - strand, within Sama_0771at 955.246 kb on + strand, within Sama_0771at 955.266 kb on + strand, within Sama_0771at 955.334 kb on + strand, within Sama_0771at 955.351 kb on + strandat 955.352 kb on - strandat 955.361 kb on + strandat 955.361 kb on + strandat 955.361 kb on + strandat 955.362 kb on - strandat 955.362 kb on - strandat 955.362 kb on - strandat 955.363 kb on + strandat 955.363 kb on + strandat 955.364 kb on - strandat 955.435 kb on + strandat 955.435 kb on + strandat 955.441 kb on - strandat 955.441 kb on - strandat 955.530 kb on + strandat 955.540 kb on + strandat 955.541 kb on - strandat 955.541 kb on - strandat 955.635 kb on + strand, within Sama_0772at 955.636 kb on - strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.643 kb on + strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.644 kb on - strand, within Sama_0772at 955.650 kb on + strand, within Sama_0772at 955.651 kb on - strand, within Sama_0772at 955.674 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.685 kb on + strand, within Sama_0772at 955.737 kb on + strand, within Sama_0772at 955.784 kb on + strand, within Sama_0772at 955.813 kb on + strand, within Sama_0772at 955.814 kb on - strand, within Sama_0772at 955.814 kb on - strand, within Sama_0772at 955.891 kb on - strand, within Sama_0772at 956.067 kb on + strand, within Sama_0772at 956.068 kb on - strand, within Sama_0772at 956.083 kb on + strand, within Sama_0772at 956.084 kb on - strand, within Sama_0772at 956.116 kb on - strand, within Sama_0772at 956.261 kb on + strand, within Sama_0772at 956.262 kb on - strand, within Sama_0772at 956.262 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.343 kb on - strand, within Sama_0772at 956.364 kb on + strandat 956.365 kb on - strandat 956.459 kb on + strandat 956.460 kb on - strandat 956.460 kb on - strandat 956.460 kb on - strandat 956.513 kb on - strandat 956.558 kb on + strand, within Sama_0773at 956.559 kb on - strand, within Sama_0773at 956.559 kb on - strand, within Sama_0773at 956.614 kb on + strand, within Sama_0773at 956.614 kb on + strand, within Sama_0773at 956.615 kb on - strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.618 kb on + strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.619 kb on - strand, within Sama_0773at 956.629 kb on + strand, within Sama_0773at 956.630 kb on - strand, within Sama_0773at 956.672 kb on + strand, within Sama_0773at 956.731 kb on + strand, within Sama_0773at 956.732 kb on - strand, within Sama_0773at 956.732 kb on - strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.753 kb on + strand, within Sama_0773at 956.754 kb on - strand, within Sama_0773at 956.772 kb on - strand, within Sama_0773at 956.815 kb on - strand, within Sama_0773at 956.920 kb on + strand, within Sama_0773at 956.963 kb on - strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.993 kb on + strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 956.994 kb on - strand, within Sama_0773at 957.007 kb on - strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.011 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.057 kb on + strand, within Sama_0773at 957.071 kb on + strand, within Sama_0773at 957.072 kb on - strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.078 kb on + strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.079 kb on - strand, within Sama_0773at 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.179 kb on + strandat 957.182 kb on + strandat 957.230 kb on + strandat 957.249 kb on + strandat 957.249 kb on + strandat 957.266 kb on + strandat 957.267 kb on - strandat 957.379 kb on + strand, within Sama_0774at 957.379 kb on + strand, within Sama_0774at 957.383 kb on + strand, within Sama_0774

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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954,814 + +0.2
954,814 + +0.6
954,815 - +0.7
954,856 + -0.9
954,857 - +0.7
954,857 - -0.1
954,931 + Sama_0771 0.13 -2.6
954,945 - Sama_0771 0.16 -1.8
954,945 - Sama_0771 0.16 +0.1
954,945 - Sama_0771 0.16 -0.3
955,048 + Sama_0771 0.35 -0.8
955,048 + Sama_0771 0.35 -1.6
955,049 - Sama_0771 0.36 +0.1
955,064 + Sama_0771 0.38 -2.0
955,064 + Sama_0771 0.38 -1.0
955,065 - Sama_0771 0.39 -1.5
955,065 - Sama_0771 0.39 +0.1
955,144 + Sama_0771 0.53 -0.2
955,160 - Sama_0771 0.56 -1.5
955,246 + Sama_0771 0.73 -0.8
955,266 + Sama_0771 0.76 +1.7
955,334 + Sama_0771 0.89 -0.2
955,351 + +0.1
955,352 - -1.7
955,361 + -1.1
955,361 + -0.2
955,361 + -1.6
955,362 - -0.4
955,362 - -1.8
955,362 - -3.0
955,363 + -1.8
955,363 + -0.3
955,364 - +3.2
955,435 + -0.6
955,435 + -0.5
955,441 - -1.6
955,441 - -0.7
955,530 + +0.1
955,540 + -1.3
955,541 - +0.2
955,541 - -2.0
955,635 + Sama_0772 0.16 -0.2
955,636 - Sama_0772 0.16 -1.0
955,643 + Sama_0772 0.16 +0.5
955,643 + Sama_0772 0.16 -0.3
955,643 + Sama_0772 0.16 +0.7
955,644 - Sama_0772 0.16 +1.7
955,644 - Sama_0772 0.16 +0.4
955,644 - Sama_0772 0.16 +0.5
955,644 - Sama_0772 0.16 -2.4
955,650 + Sama_0772 0.17 -2.8
955,651 - Sama_0772 0.17 +0.1
955,674 + Sama_0772 0.20 +1.8
955,685 + Sama_0772 0.21 -0.0
955,685 + Sama_0772 0.21 -1.2
955,685 + Sama_0772 0.21 -0.3
955,737 + Sama_0772 0.26 -0.3
955,784 + Sama_0772 0.31 +1.1
955,813 + Sama_0772 0.34 -0.8
955,814 - Sama_0772 0.34 -1.3
955,814 - Sama_0772 0.34 -2.9
955,891 - Sama_0772 0.42 -2.2
956,067 + Sama_0772 0.61 +0.1
956,068 - Sama_0772 0.61 -2.1
956,083 + Sama_0772 0.62 -0.6
956,084 - Sama_0772 0.62 -0.4
956,116 - Sama_0772 0.66 +0.7
956,261 + Sama_0772 0.81 +2.3
956,262 - Sama_0772 0.81 +2.0
956,262 - Sama_0772 0.81 -0.6
956,343 - Sama_0772 0.89 -1.3
956,343 - Sama_0772 0.89 +1.3
956,364 + -0.9
956,365 - +0.4
956,459 + +2.3
956,460 - +2.0
956,460 - -1.5
956,460 - +4.6
956,513 - +0.3
956,558 + Sama_0773 0.14 +4.6
956,559 - Sama_0773 0.15 +0.1
956,559 - Sama_0773 0.15 +2.3
956,614 + Sama_0773 0.22 -0.5
956,614 + Sama_0773 0.22 -1.8
956,615 - Sama_0773 0.22 +0.4
956,618 + Sama_0773 0.22 -2.2
956,618 + Sama_0773 0.22 -2.7
956,618 + Sama_0773 0.22 +0.4
956,618 + Sama_0773 0.22 +1.7
956,618 + Sama_0773 0.22 -1.1
956,618 + Sama_0773 0.22 +2.2
956,618 + Sama_0773 0.22 -0.9
956,619 - Sama_0773 0.22 +0.1
956,619 - Sama_0773 0.22 -0.7
956,619 - Sama_0773 0.22 -1.3
956,629 + Sama_0773 0.24 -0.9
956,630 - Sama_0773 0.24 -0.9
956,672 + Sama_0773 0.29 -0.9
956,731 + Sama_0773 0.37 -1.3
956,732 - Sama_0773 0.37 -0.6
956,732 - Sama_0773 0.37 +3.7
956,753 + Sama_0773 0.40 -2.5
956,753 + Sama_0773 0.40 -2.9
956,753 + Sama_0773 0.40 -0.9
956,754 - Sama_0773 0.40 -0.8
956,772 - Sama_0773 0.42 +0.5
956,815 - Sama_0773 0.48 +0.5
956,920 + Sama_0773 0.61 -0.3
956,963 - Sama_0773 0.67 +2.8
956,993 + Sama_0773 0.71 -0.6
956,993 + Sama_0773 0.71 -1.3
956,993 + Sama_0773 0.71 +0.7
956,994 - Sama_0773 0.71 +3.4
956,994 - Sama_0773 0.71 -0.2
957,007 - Sama_0773 0.73 -0.7
957,011 + Sama_0773 0.73 -0.5
957,011 + Sama_0773 0.73 -1.6
957,011 + Sama_0773 0.73 -0.6
957,011 + Sama_0773 0.73 -2.0
957,011 + Sama_0773 0.73 -1.2
957,057 + Sama_0773 0.79 -1.9
957,057 + Sama_0773 0.79 +3.8
957,071 + Sama_0773 0.81 -0.4
957,072 - Sama_0773 0.81 -0.9
957,078 + Sama_0773 0.82 -1.5
957,078 + Sama_0773 0.82 +0.1
957,078 + Sama_0773 0.82 +0.7
957,078 + Sama_0773 0.82 +0.7
957,079 - Sama_0773 0.82 -1.9
957,079 - Sama_0773 0.82 -1.8
957,079 - Sama_0773 0.82 -2.6
957,179 + +1.7
957,179 + -0.2
957,179 + -1.8
957,179 + -1.3
957,182 + -2.0
957,230 + -2.0
957,249 + -0.5
957,249 + +4.3
957,266 + -2.5
957,267 - -1.0
957,379 + Sama_0774 0.23 +1.5
957,379 + Sama_0774 0.23 +2.5
957,383 + Sama_0774 0.24 -0.3

Or see this region's nucleotide sequence