Strain Fitness in Shewanella amazonensis SB2B around Sama_0721

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0719 and Sama_0720 are separated by 40 nucleotidesSama_0720 and Sama_0721 are separated by 120 nucleotidesSama_0721 and Sama_0722 are separated by 167 nucleotides Sama_0719: Sama_0719 - hypothetical protein (RefSeq), at 884,021 to 884,701 _0719 Sama_0720: Sama_0720 - hypothetical protein (RefSeq), at 884,742 to 885,197 _0720 Sama_0721: Sama_0721 - integral membrane protein CcmA involved in cell shape determination-like protein (RefSeq), at 885,318 to 886,166 _0721 Sama_0722: Sama_0722 - hypothetical protein (RefSeq), at 886,334 to 887,218 _0722 Position (kb) 885 886 887Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.508 kb on + strand, within Sama_0719at 884.508 kb on + strand, within Sama_0719at 884.508 kb on + strand, within Sama_0719at 884.509 kb on - strand, within Sama_0719at 884.620 kb on - strand, within Sama_0719at 884.657 kb on - strandat 884.662 kb on + strandat 884.662 kb on + strandat 884.663 kb on - strandat 884.663 kb on - strandat 884.663 kb on - strandat 884.685 kb on + strandat 884.842 kb on + strand, within Sama_0720at 884.843 kb on - strand, within Sama_0720at 884.843 kb on - strand, within Sama_0720at 884.843 kb on - strand, within Sama_0720at 884.852 kb on + strand, within Sama_0720at 884.852 kb on + strand, within Sama_0720at 884.861 kb on + strand, within Sama_0720at 884.861 kb on + strand, within Sama_0720at 884.870 kb on + strand, within Sama_0720at 884.870 kb on + strand, within Sama_0720at 884.871 kb on - strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.981 kb on - strand, within Sama_0720at 884.981 kb on - strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.993 kb on + strand, within Sama_0720at 884.994 kb on - strand, within Sama_0720at 885.001 kb on + strand, within Sama_0720at 885.001 kb on + strand, within Sama_0720at 885.002 kb on - strand, within Sama_0720at 885.026 kb on + strand, within Sama_0720at 885.027 kb on - strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.069 kb on - strand, within Sama_0720at 885.069 kb on - strand, within Sama_0720at 885.073 kb on - strand, within Sama_0720at 885.073 kb on - strand, within Sama_0720at 885.115 kb on + strand, within Sama_0720at 885.195 kb on + strandat 885.195 kb on + strandat 885.195 kb on + strandat 885.196 kb on - strandat 885.196 kb on - strandat 885.196 kb on - strandat 885.226 kb on + strandat 885.227 kb on - strandat 885.344 kb on + strandat 885.344 kb on + strandat 885.345 kb on - strandat 885.345 kb on - strandat 885.345 kb on - strandat 885.442 kb on + strand, within Sama_0721at 885.442 kb on + strand, within Sama_0721at 885.442 kb on + strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.448 kb on + strand, within Sama_0721at 885.464 kb on + strand, within Sama_0721at 885.518 kb on + strand, within Sama_0721at 885.581 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.779 kb on + strand, within Sama_0721at 885.789 kb on + strand, within Sama_0721at 885.939 kb on + strand, within Sama_0721at 885.939 kb on + strand, within Sama_0721at 885.940 kb on - strand, within Sama_0721at 886.116 kb on - strandat 886.116 kb on - strandat 886.116 kb on - strandat 886.118 kb on + strandat 886.119 kb on - strandat 886.164 kb on + strandat 886.165 kb on - strandat 886.335 kb on + strandat 886.336 kb on - strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.382 kb on - strandat 886.382 kb on - strandat 886.640 kb on - strand, within Sama_0722at 886.640 kb on - strand, within Sama_0722at 886.775 kb on + strand, within Sama_0722at 886.776 kb on - strand, within Sama_0722at 886.830 kb on - strand, within Sama_0722at 886.858 kb on + strand, within Sama_0722at 886.859 kb on - strand, within Sama_0722at 886.887 kb on + strand, within Sama_0722at 886.888 kb on - strand, within Sama_0722at 886.910 kb on + strand, within Sama_0722at 886.910 kb on + strand, within Sama_0722at 886.911 kb on - strand, within Sama_0722at 886.918 kb on - strand, within Sama_0722at 886.943 kb on + strand, within Sama_0722at 886.944 kb on - strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.979 kb on - strand, within Sama_0722at 886.979 kb on - strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.064 kb on - strand, within Sama_0722at 887.074 kb on + strand, within Sama_0722at 887.106 kb on - strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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884,406 + Sama_0719 0.57 -0.1
884,406 + Sama_0719 0.57 +0.5
884,406 + Sama_0719 0.57 -2.3
884,406 + Sama_0719 0.57 +4.8
884,406 + Sama_0719 0.57 +0.4
884,406 + Sama_0719 0.57 -0.3
884,407 - Sama_0719 0.57 +1.4
884,407 - Sama_0719 0.57 -2.2
884,407 - Sama_0719 0.57 -1.0
884,407 - Sama_0719 0.57 -1.3
884,407 - Sama_0719 0.57 -1.1
884,407 - Sama_0719 0.57 -1.3
884,407 - Sama_0719 0.57 +1.2
884,407 - Sama_0719 0.57 +4.1
884,407 - Sama_0719 0.57 -0.8
884,508 + Sama_0719 0.72 +2.2
884,508 + Sama_0719 0.72 -1.2
884,508 + Sama_0719 0.72 +0.3
884,509 - Sama_0719 0.72 -1.3
884,620 - Sama_0719 0.88 -0.3
884,657 - -1.1
884,662 + -1.2
884,662 + +0.3
884,663 - +1.1
884,663 - -0.2
884,663 - -1.7
884,685 + -1.4
884,842 + Sama_0720 0.22 +4.8
884,843 - Sama_0720 0.22 -1.1
884,843 - Sama_0720 0.22 +0.5
884,843 - Sama_0720 0.22 +4.3
884,852 + Sama_0720 0.24 +1.2
884,852 + Sama_0720 0.24 -3.1
884,861 + Sama_0720 0.26 +1.2
884,861 + Sama_0720 0.26 -0.1
884,870 + Sama_0720 0.28 -0.8
884,870 + Sama_0720 0.28 -0.2
884,871 - Sama_0720 0.28 -1.6
884,947 + Sama_0720 0.45 +0.7
884,947 + Sama_0720 0.45 +0.7
884,947 + Sama_0720 0.45 +1.8
884,947 + Sama_0720 0.45 +2.1
884,948 - Sama_0720 0.45 -0.8
884,948 - Sama_0720 0.45 +2.5
884,948 - Sama_0720 0.45 +2.5
884,948 - Sama_0720 0.45 +3.1
884,948 - Sama_0720 0.45 -1.4
884,948 - Sama_0720 0.45 -1.8
884,948 - Sama_0720 0.45 -0.5
884,981 - Sama_0720 0.52 -1.4
884,981 - Sama_0720 0.52 -0.6
884,991 + Sama_0720 0.55 +1.0
884,991 + Sama_0720 0.55 +1.1
884,991 + Sama_0720 0.55 +0.9
884,991 + Sama_0720 0.55 +2.3
884,992 - Sama_0720 0.55 +1.7
884,992 - Sama_0720 0.55 +1.9
884,992 - Sama_0720 0.55 -1.5
884,992 - Sama_0720 0.55 -0.4
884,993 + Sama_0720 0.55 -0.6
884,994 - Sama_0720 0.55 +1.2
885,001 + Sama_0720 0.57 +2.2
885,001 + Sama_0720 0.57 -1.3
885,002 - Sama_0720 0.57 -2.0
885,026 + Sama_0720 0.62 -0.7
885,027 - Sama_0720 0.62 +0.6
885,068 + Sama_0720 0.71 -1.3
885,068 + Sama_0720 0.71 -0.6
885,068 + Sama_0720 0.71 +0.4
885,068 + Sama_0720 0.71 -0.4
885,068 + Sama_0720 0.71 -1.6
885,069 - Sama_0720 0.72 -0.6
885,069 - Sama_0720 0.72 -0.6
885,073 - Sama_0720 0.73 +0.5
885,073 - Sama_0720 0.73 -0.2
885,115 + Sama_0720 0.82 -2.4
885,195 + +4.3
885,195 + -2.0
885,195 + +1.3
885,196 - +2.9
885,196 - +0.1
885,196 - -0.2
885,226 + -1.1
885,227 - -0.3
885,344 + +2.3
885,344 + -1.5
885,345 - -1.1
885,345 - -1.6
885,345 - -0.3
885,442 + Sama_0721 0.15 -1.0
885,442 + Sama_0721 0.15 -0.3
885,442 + Sama_0721 0.15 +0.3
885,443 - Sama_0721 0.15 +2.0
885,443 - Sama_0721 0.15 -2.1
885,443 - Sama_0721 0.15 +2.9
885,443 - Sama_0721 0.15 +3.2
885,448 + Sama_0721 0.15 -0.5
885,464 + Sama_0721 0.17 -1.3
885,518 + Sama_0721 0.24 +1.1
885,581 + Sama_0721 0.31 -2.5
885,703 + Sama_0721 0.45 +3.7
885,703 + Sama_0721 0.45 -2.5
885,703 + Sama_0721 0.45 +1.1
885,703 + Sama_0721 0.45 +0.0
885,703 + Sama_0721 0.45 +0.7
885,704 - Sama_0721 0.45 -1.1
885,704 - Sama_0721 0.45 +3.3
885,704 - Sama_0721 0.45 -0.6
885,704 - Sama_0721 0.45 -0.3
885,704 - Sama_0721 0.45 +0.1
885,779 + Sama_0721 0.54 -2.7
885,789 + Sama_0721 0.55 +0.1
885,939 + Sama_0721 0.73 -0.9
885,939 + Sama_0721 0.73 -1.1
885,940 - Sama_0721 0.73 -1.1
886,116 - -0.6
886,116 - +4.4
886,116 - +0.4
886,118 + -1.7
886,119 - -0.9
886,164 + +0.4
886,165 - +4.1
886,335 + +0.7
886,336 - -0.9
886,381 + -0.3
886,381 + -1.0
886,381 + -2.2
886,381 + -0.9
886,381 + -1.3
886,382 - -0.5
886,382 - +2.0
886,640 - Sama_0722 0.35 -0.9
886,640 - Sama_0722 0.35 +1.8
886,775 + Sama_0722 0.50 +0.1
886,776 - Sama_0722 0.50 +0.3
886,830 - Sama_0722 0.56 +2.5
886,858 + Sama_0722 0.59 -3.1
886,859 - Sama_0722 0.59 +0.7
886,887 + Sama_0722 0.62 -0.6
886,888 - Sama_0722 0.63 +0.4
886,910 + Sama_0722 0.65 -1.0
886,910 + Sama_0722 0.65 +1.1
886,911 - Sama_0722 0.65 -2.1
886,918 - Sama_0722 0.66 -1.2
886,943 + Sama_0722 0.69 -2.4
886,944 - Sama_0722 0.69 -0.8
886,978 + Sama_0722 0.73 +0.0
886,978 + Sama_0722 0.73 -1.1
886,978 + Sama_0722 0.73 +0.5
886,979 - Sama_0722 0.73 +4.6
886,979 - Sama_0722 0.73 -1.2
886,991 + Sama_0722 0.74 -1.5
886,991 + Sama_0722 0.74 +1.0
886,991 + Sama_0722 0.74 -0.9
886,992 - Sama_0722 0.74 -1.0
886,992 - Sama_0722 0.74 +2.7
886,992 - Sama_0722 0.74 +2.7
886,992 - Sama_0722 0.74 +0.5
886,992 - Sama_0722 0.74 -1.7
886,992 - Sama_0722 0.74 -1.9
886,992 - Sama_0722 0.74 -1.1
886,992 - Sama_0722 0.74 +2.4
886,992 - Sama_0722 0.74 +1.1
886,992 - Sama_0722 0.74 -0.3
886,992 - Sama_0722 0.74 -2.0
886,992 - Sama_0722 0.74 +0.2
887,063 + Sama_0722 0.82 +0.1
887,063 + Sama_0722 0.82 +1.5
887,063 + Sama_0722 0.82 -1.6
887,063 + Sama_0722 0.82 +5.2
887,063 + Sama_0722 0.82 -0.4
887,064 - Sama_0722 0.82 -3.5
887,074 + Sama_0722 0.84 +1.8
887,106 - Sama_0722 0.87 -1.4
887,110 + Sama_0722 0.88 -1.2
887,110 + Sama_0722 0.88 +0.6
887,110 + Sama_0722 0.88 +2.8
887,110 + Sama_0722 0.88 -1.9
887,110 + Sama_0722 0.88 -1.5
887,110 + Sama_0722 0.88 -2.0
887,111 - Sama_0722 0.88 -0.8
887,111 - Sama_0722 0.88 -1.1
887,111 - Sama_0722 0.88 -2.4
887,111 - Sama_0722 0.88 -1.5
887,111 - Sama_0722 0.88 -1.5
887,111 - Sama_0722 0.88 +1.0

Or see this region's nucleotide sequence