Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0688 and Sama_0689 are separated by 58 nucleotides Sama_0689 and Sama_0690 are separated by 100 nucleotides Sama_0690 and Sama_0691 overlap by 4 nucleotides
Sama_0688: Sama_0688 - peptidase M24 (RefSeq), at 852,263 to 853,474
_0688
Sama_0689: Sama_0689 - peptidyl-prolyl cis-trans isomerase, FKBP-type (RefSeq), at 853,533 to 854,003
_0689
Sama_0690: Sama_0690 - cold shock DNA-binding domain-containing protein (RefSeq), at 854,104 to 854,457
_0690
Sama_0691: Sama_0691 - hypothetical protein (RefSeq), at 854,454 to 855,599
_0691
Position (kb) 854
855 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 853.255 kb on + strand, within Sama_0688 at 853.269 kb on + strand, within Sama_0688 at 853.269 kb on + strand, within Sama_0688 at 853.269 kb on + strand, within Sama_0688 at 853.270 kb on - strand, within Sama_0688 at 853.270 kb on - strand, within Sama_0688 at 853.279 kb on + strand, within Sama_0688 at 853.296 kb on - strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.315 kb on + strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.316 kb on - strand, within Sama_0688 at 853.383 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.403 kb on + strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.404 kb on - strand at 853.472 kb on + strand at 853.472 kb on + strand at 853.472 kb on + strand at 853.473 kb on - strand at 853.473 kb on - strand at 853.473 kb on - strand at 853.473 kb on - strand at 853.545 kb on + strand at 853.546 kb on - strand at 853.546 kb on - strand at 853.594 kb on - strand, within Sama_0689 at 853.610 kb on - strand, within Sama_0689 at 853.688 kb on + strand, within Sama_0689 at 853.771 kb on + strand, within Sama_0689 at 853.771 kb on + strand, within Sama_0689 at 853.837 kb on + strand, within Sama_0689 at 853.837 kb on + strand, within Sama_0689 at 853.837 kb on + strand, within Sama_0689 at 853.838 kb on - strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.863 kb on + strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.864 kb on - strand, within Sama_0689 at 853.937 kb on + strand, within Sama_0689 at 853.982 kb on + strand at 853.982 kb on + strand at 853.982 kb on + strand at 853.983 kb on - strand at 854.040 kb on + strand at 854.041 kb on - strand at 854.041 kb on - strand at 854.041 kb on - strand at 854.052 kb on + strand at 854.052 kb on + strand at 854.052 kb on + strand at 854.053 kb on - strand at 854.053 kb on - strand at 854.053 kb on - strand at 854.057 kb on + strand at 854.057 kb on + strand at 854.058 kb on - strand at 854.058 kb on - strand at 854.064 kb on - strand at 854.064 kb on - strand at 854.064 kb on - strand at 854.105 kb on + strand at 854.106 kb on - strand at 854.135 kb on + strand at 854.136 kb on - strand at 854.136 kb on - strand at 854.136 kb on - strand at 854.136 kb on - strand at 854.138 kb on + strand at 854.184 kb on - strand, within Sama_0690 at 854.208 kb on + strand, within Sama_0690 at 854.314 kb on + strand, within Sama_0690 at 854.315 kb on - strand, within Sama_0690 at 854.372 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.377 kb on + strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.378 kb on - strand, within Sama_0690 at 854.432 kb on + strand at 854.432 kb on + strand at 854.432 kb on + strand at 854.432 kb on + strand at 854.433 kb on - strand at 854.451 kb on + strand at 854.451 kb on + strand at 854.451 kb on + strand at 854.451 kb on + strand at 854.452 kb on - strand at 854.452 kb on - strand at 854.463 kb on + strand at 854.474 kb on + strand at 854.475 kb on - strand at 854.510 kb on - strand at 854.517 kb on + strand at 854.517 kb on + strand at 854.517 kb on + strand at 854.517 kb on + strand at 854.518 kb on - strand at 854.518 kb on - strand at 854.540 kb on + strand at 854.555 kb on - strand at 854.555 kb on - strand at 854.571 kb on + strand, within Sama_0691 at 854.571 kb on + strand, within Sama_0691 at 854.571 kb on + strand, within Sama_0691 at 854.571 kb on + strand, within Sama_0691 at 854.572 kb on - strand, within Sama_0691 at 854.608 kb on + strand, within Sama_0691 at 854.608 kb on + strand, within Sama_0691 at 854.609 kb on - strand, within Sama_0691 at 854.609 kb on - strand, within Sama_0691 at 854.762 kb on + strand, within Sama_0691 at 854.777 kb on - strand, within Sama_0691 at 854.805 kb on + strand, within Sama_0691 at 854.805 kb on + strand, within Sama_0691 at 854.855 kb on - strand, within Sama_0691 at 854.862 kb on + strand, within Sama_0691 at 854.862 kb on + strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.863 kb on - strand, within Sama_0691 at 854.898 kb on + strand, within Sama_0691 at 854.950 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.956 kb on + strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.957 kb on - strand, within Sama_0691 at 854.986 kb on + strand, within Sama_0691 at 854.986 kb on + strand, within Sama_0691 at 854.986 kb on + strand, within Sama_0691 at 854.987 kb on - strand, within Sama_0691 at 855.064 kb on + strand, within Sama_0691 at 855.065 kb on - strand, within Sama_0691 at 855.097 kb on + strand, within Sama_0691 at 855.162 kb on + strand, within Sama_0691 at 855.162 kb on + strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.163 kb on - strand, within Sama_0691 at 855.204 kb on - strand, within Sama_0691 at 855.204 kb on - strand, within Sama_0691 at 855.227 kb on - strand, within Sama_0691 at 855.227 kb on - strand, within Sama_0691 at 855.256 kb on + strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.257 kb on - strand, within Sama_0691 at 855.284 kb on + strand, within Sama_0691 at 855.285 kb on - strand, within Sama_0691 at 855.285 kb on - strand, within Sama_0691 at 855.288 kb on + strand, within Sama_0691 at 855.288 kb on + strand, within Sama_0691 at 855.289 kb on - strand, within Sama_0691 at 855.289 kb on - strand, within Sama_0691 at 855.323 kb on + strand, within Sama_0691 at 855.324 kb on - strand, within Sama_0691 at 855.335 kb on + strand, within Sama_0691 at 855.398 kb on + strand, within Sama_0691 at 855.399 kb on - strand, within Sama_0691 at 855.410 kb on + strand, within Sama_0691 at 855.411 kb on - strand, within Sama_0691
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 853,255 + Sama_0688 0.82 +2.0 853,269 + Sama_0688 0.83 -0.1 853,269 + Sama_0688 0.83 -3.6 853,269 + Sama_0688 0.83 -0.8 853,270 - Sama_0688 0.83 -1.1 853,270 - Sama_0688 0.83 +2.3 853,279 + Sama_0688 0.84 -0.3 853,296 - Sama_0688 0.85 -1.4 853,315 + Sama_0688 0.87 -0.4 853,315 + Sama_0688 0.87 -2.5 853,315 + Sama_0688 0.87 -1.4 853,315 + Sama_0688 0.87 +1.0 853,315 + Sama_0688 0.87 -0.1 853,315 + Sama_0688 0.87 -0.8 853,315 + Sama_0688 0.87 +4.3 853,316 - Sama_0688 0.87 -0.7 853,316 - Sama_0688 0.87 +2.1 853,316 - Sama_0688 0.87 +1.4 853,316 - Sama_0688 0.87 -0.8 853,316 - Sama_0688 0.87 +0.9 853,383 + -0.3 853,403 + -2.8 853,403 + -2.3 853,403 + -1.3 853,403 + +2.7 853,403 + -0.7 853,403 + +2.7 853,403 + -2.1 853,403 + -0.9 853,403 + +2.0 853,404 - +2.6 853,404 - +1.9 853,404 - -1.4 853,404 - -0.3 853,404 - +0.2 853,404 - -0.1 853,472 + -1.7 853,472 + +1.4 853,472 + +0.0 853,473 - +0.9 853,473 - -0.6 853,473 - -0.3 853,473 - +2.7 853,545 + -0.8 853,546 - +4.0 853,546 - +3.2 853,594 - Sama_0689 0.13 -1.7 853,610 - Sama_0689 0.16 -1.2 853,688 + Sama_0689 0.33 -0.5 853,771 + Sama_0689 0.51 +2.5 853,771 + Sama_0689 0.51 +0.9 853,837 + Sama_0689 0.65 +2.5 853,837 + Sama_0689 0.65 -0.4 853,837 + Sama_0689 0.65 -1.1 853,838 - Sama_0689 0.65 -2.6 853,863 + Sama_0689 0.70 +0.5 853,863 + Sama_0689 0.70 +0.2 853,863 + Sama_0689 0.70 -0.9 853,863 + Sama_0689 0.70 +2.3 853,864 - Sama_0689 0.70 +3.9 853,864 - Sama_0689 0.70 -1.2 853,864 - Sama_0689 0.70 -1.3 853,864 - Sama_0689 0.70 +0.1 853,937 + Sama_0689 0.86 +0.3 853,982 + -0.7 853,982 + -1.0 853,982 + -1.6 853,983 - +0.2 854,040 + +0.6 854,041 - -0.8 854,041 - -1.7 854,041 - -2.4 854,052 + -0.8 854,052 + +2.4 854,052 + -0.6 854,053 - +0.9 854,053 - -1.2 854,053 - -1.7 854,057 + +1.6 854,057 + +1.3 854,058 - +0.3 854,058 - +1.8 854,064 - +1.9 854,064 - -0.6 854,064 - +1.3 854,105 + +4.6 854,106 - -0.9 854,135 + -3.2 854,136 - -2.5 854,136 - +0.9 854,136 - -0.9 854,136 - -0.6 854,138 + +1.6 854,184 - Sama_0690 0.23 -0.4 854,208 + Sama_0690 0.29 +3.4 854,314 + Sama_0690 0.59 +5.3 854,315 - Sama_0690 0.60 +1.4 854,372 + Sama_0690 0.76 +3.6 854,377 + Sama_0690 0.77 +1.7 854,377 + Sama_0690 0.77 -0.8 854,377 + Sama_0690 0.77 +1.0 854,377 + Sama_0690 0.77 +1.1 854,378 - Sama_0690 0.77 +1.6 854,378 - Sama_0690 0.77 +3.4 854,378 - Sama_0690 0.77 +0.7 854,378 - Sama_0690 0.77 +1.2 854,378 - Sama_0690 0.77 +4.7 854,378 - Sama_0690 0.77 -1.7 854,432 + -0.7 854,432 + -0.5 854,432 + +3.6 854,432 + -2.3 854,433 - +1.6 854,451 + -1.3 854,451 + -0.5 854,451 + -0.1 854,451 + -3.4 854,452 - -1.1 854,452 - -1.9 854,463 + -0.8 854,474 + -1.5 854,475 - +0.2 854,510 - -2.2 854,517 + -1.1 854,517 + +0.5 854,517 + +1.3 854,517 + +0.4 854,518 - -1.1 854,518 - +4.8 854,540 + -0.7 854,555 - +4.5 854,555 - -1.4 854,571 + Sama_0691 0.10 -2.9 854,571 + Sama_0691 0.10 +0.4 854,571 + Sama_0691 0.10 +2.1 854,571 + Sama_0691 0.10 +2.5 854,572 - Sama_0691 0.10 +0.7 854,608 + Sama_0691 0.13 -2.0 854,608 + Sama_0691 0.13 +0.2 854,609 - Sama_0691 0.14 -1.0 854,609 - Sama_0691 0.14 +1.1 854,762 + Sama_0691 0.27 +0.8 854,777 - Sama_0691 0.28 +0.7 854,805 + Sama_0691 0.31 +0.7 854,805 + Sama_0691 0.31 +2.2 854,855 - Sama_0691 0.35 -0.3 854,862 + Sama_0691 0.36 -0.6 854,862 + Sama_0691 0.36 -2.0 854,863 - Sama_0691 0.36 -1.4 854,863 - Sama_0691 0.36 -2.0 854,863 - Sama_0691 0.36 +1.2 854,863 - Sama_0691 0.36 +3.6 854,863 - Sama_0691 0.36 +0.9 854,898 + Sama_0691 0.39 -0.8 854,950 + Sama_0691 0.43 +1.2 854,956 + Sama_0691 0.44 +1.2 854,956 + Sama_0691 0.44 +3.2 854,956 + Sama_0691 0.44 +1.7 854,956 + Sama_0691 0.44 -1.1 854,956 + Sama_0691 0.44 +0.2 854,956 + Sama_0691 0.44 +3.5 854,956 + Sama_0691 0.44 -1.7 854,956 + Sama_0691 0.44 -0.8 854,957 - Sama_0691 0.44 +4.8 854,957 - Sama_0691 0.44 +1.3 854,957 - Sama_0691 0.44 +0.9 854,957 - Sama_0691 0.44 -1.1 854,957 - Sama_0691 0.44 -0.1 854,957 - Sama_0691 0.44 +0.2 854,957 - Sama_0691 0.44 +0.9 854,957 - Sama_0691 0.44 +1.0 854,957 - Sama_0691 0.44 -1.3 854,957 - Sama_0691 0.44 +3.1 854,957 - Sama_0691 0.44 +1.0 854,957 - Sama_0691 0.44 -2.0 854,957 - Sama_0691 0.44 -0.8 854,957 - Sama_0691 0.44 -0.3 854,957 - Sama_0691 0.44 +5.6 854,986 + Sama_0691 0.46 -2.4 854,986 + Sama_0691 0.46 -0.7 854,986 + Sama_0691 0.46 +1.0 854,987 - Sama_0691 0.47 -1.6 855,064 + Sama_0691 0.53 -1.4 855,065 - Sama_0691 0.53 +0.2 855,097 + Sama_0691 0.56 -0.4 855,162 + Sama_0691 0.62 -0.6 855,162 + Sama_0691 0.62 +4.1 855,163 - Sama_0691 0.62 -1.6 855,163 - Sama_0691 0.62 +1.2 855,163 - Sama_0691 0.62 -1.8 855,163 - Sama_0691 0.62 +0.2 855,204 - Sama_0691 0.65 +0.7 855,204 - Sama_0691 0.65 +5.6 855,227 - Sama_0691 0.67 -1.8 855,227 - Sama_0691 0.67 -0.3 855,256 + Sama_0691 0.70 -1.0 855,257 - Sama_0691 0.70 +0.4 855,257 - Sama_0691 0.70 -0.0 855,257 - Sama_0691 0.70 -2.1 855,257 - Sama_0691 0.70 +2.8 855,284 + Sama_0691 0.72 -2.7 855,285 - Sama_0691 0.73 +1.7 855,285 - Sama_0691 0.73 -0.5 855,288 + Sama_0691 0.73 -1.6 855,288 + Sama_0691 0.73 -1.6 855,289 - Sama_0691 0.73 -1.3 855,289 - Sama_0691 0.73 +2.2 855,323 + Sama_0691 0.76 -0.0 855,324 - Sama_0691 0.76 -1.1 855,335 + Sama_0691 0.77 -0.5 855,398 + Sama_0691 0.82 -2.0 855,399 - Sama_0691 0.82 -1.6 855,410 + Sama_0691 0.83 -0.6 855,411 - Sama_0691 0.84 -0.1
Or see this region's nucleotide sequence