Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfA and Sama_0649 are separated by 80 nucleotides Sama_0649 and Sama_0650 are separated by 240 nucleotides Sama_0650 and Sama_0651 are separated by 11 nucleotides
Sama_0648: nrfA - cytochrome c552 (RefSeq), at 803,874 to 805,277
nrfA
Sama_0649: Sama_0649 - isochorismatase family protein (RefSeq), at 805,358 to 805,897
_0649
Sama_0650: Sama_0650 - nitrogen regulatory protein P-II (RefSeq), at 806,138 to 806,476
_0650
Sama_0651: Sama_0651 - Rh-like protein/ammonium transporter (RefSeq), at 806,488 to 807,738
_0651
Position (kb) 805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 804.359 kb on + strand, within nrfA at 804.360 kb on - strand, within nrfA at 804.410 kb on + strand, within nrfA at 804.477 kb on + strand, within nrfA at 804.477 kb on + strand, within nrfA at 804.477 kb on + strand, within nrfA at 804.477 kb on + strand, within nrfA at 804.480 kb on + strand, within nrfA at 804.480 kb on + strand, within nrfA at 804.480 kb on + strand, within nrfA at 804.481 kb on - strand, within nrfA at 804.481 kb on - strand, within nrfA at 804.561 kb on + strand, within nrfA at 804.561 kb on + strand, within nrfA at 804.561 kb on + strand, within nrfA at 804.561 kb on + strand, within nrfA at 804.561 kb on + strand, within nrfA at 804.562 kb on - strand, within nrfA at 804.562 kb on - strand, within nrfA at 804.564 kb on + strand, within nrfA at 804.564 kb on + strand, within nrfA at 804.565 kb on - strand, within nrfA at 804.660 kb on - strand, within nrfA at 804.825 kb on + strand, within nrfA at 804.825 kb on + strand, within nrfA at 804.825 kb on + strand, within nrfA at 804.826 kb on - strand, within nrfA at 804.947 kb on + strand, within nrfA at 804.947 kb on + strand, within nrfA at 804.948 kb on - strand, within nrfA at 804.987 kb on + strand, within nrfA at 805.042 kb on + strand, within nrfA at 805.125 kb on - strand, within nrfA at 805.145 kb on + strand at 805.145 kb on + strand at 805.145 kb on + strand at 805.146 kb on - strand at 805.269 kb on + strand at 805.269 kb on + strand at 805.269 kb on + strand at 805.269 kb on + strand at 805.269 kb on + strand at 805.269 kb on + strand at 805.270 kb on - strand at 805.270 kb on - strand at 805.270 kb on - strand at 805.270 kb on - strand at 805.270 kb on - strand at 805.275 kb on + strand at 805.275 kb on + strand at 805.275 kb on + strand at 805.275 kb on + strand at 805.276 kb on - strand at 805.276 kb on - strand at 805.276 kb on - strand at 805.276 kb on - strand at 805.276 kb on - strand at 805.299 kb on + strand at 805.300 kb on - strand at 805.300 kb on - strand at 805.347 kb on - strand at 805.350 kb on - strand at 805.350 kb on - strand at 805.350 kb on - strand at 805.359 kb on + strand at 805.359 kb on + strand at 805.359 kb on + strand at 805.360 kb on - strand at 805.360 kb on - strand at 805.360 kb on - strand at 805.472 kb on + strand, within Sama_0649 at 805.472 kb on + strand, within Sama_0649 at 805.569 kb on + strand, within Sama_0649 at 805.569 kb on + strand, within Sama_0649 at 805.570 kb on - strand, within Sama_0649 at 805.570 kb on - strand, within Sama_0649 at 805.589 kb on + strand, within Sama_0649 at 805.589 kb on + strand, within Sama_0649 at 805.590 kb on - strand, within Sama_0649 at 805.622 kb on - strand, within Sama_0649 at 805.742 kb on + strand, within Sama_0649 at 805.766 kb on + strand, within Sama_0649 at 805.766 kb on + strand, within Sama_0649 at 805.766 kb on + strand, within Sama_0649 at 805.766 kb on + strand, within Sama_0649 at 805.766 kb on + strand, within Sama_0649 at 805.767 kb on - strand, within Sama_0649 at 805.767 kb on - strand, within Sama_0649 at 805.767 kb on - strand, within Sama_0649 at 805.768 kb on + strand, within Sama_0649 at 805.768 kb on + strand, within Sama_0649 at 805.769 kb on - strand, within Sama_0649 at 805.769 kb on - strand, within Sama_0649 at 805.790 kb on + strand, within Sama_0649 at 805.790 kb on + strand, within Sama_0649 at 805.830 kb on + strand, within Sama_0649 at 805.830 kb on + strand, within Sama_0649 at 805.830 kb on + strand, within Sama_0649 at 805.830 kb on + strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.831 kb on - strand, within Sama_0649 at 805.891 kb on + strand at 805.892 kb on - strand at 805.892 kb on - strand at 805.892 kb on - strand at 805.899 kb on + strand at 805.900 kb on - strand at 805.900 kb on - strand at 805.925 kb on - strand at 805.925 kb on - strand at 805.936 kb on - strand at 805.950 kb on + strand at 805.993 kb on - strand at 805.993 kb on - strand at 806.046 kb on + strand at 806.047 kb on - strand at 806.114 kb on + strand at 806.114 kb on + strand at 806.114 kb on + strand at 806.114 kb on + strand at 806.114 kb on + strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.115 kb on - strand at 806.213 kb on + strand, within Sama_0650 at 806.218 kb on + strand, within Sama_0650 at 806.218 kb on + strand, within Sama_0650 at 806.218 kb on + strand, within Sama_0650 at 806.219 kb on - strand, within Sama_0650 at 806.219 kb on - strand, within Sama_0650 at 806.219 kb on - strand, within Sama_0650 at 806.226 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.271 kb on + strand, within Sama_0650 at 806.272 kb on - strand, within Sama_0650 at 806.272 kb on - strand, within Sama_0650 at 806.272 kb on - strand, within Sama_0650 at 806.272 kb on - strand, within Sama_0650 at 806.288 kb on + strand, within Sama_0650 at 806.289 kb on - strand, within Sama_0650 at 806.289 kb on - strand, within Sama_0650 at 806.313 kb on + strand, within Sama_0650 at 806.313 kb on + strand, within Sama_0650 at 806.314 kb on - strand, within Sama_0650 at 806.329 kb on + strand, within Sama_0650 at 806.330 kb on - strand, within Sama_0650 at 806.370 kb on + strand, within Sama_0650 at 806.404 kb on + strand, within Sama_0650 at 806.425 kb on - strand, within Sama_0650 at 806.474 kb on + strand at 806.474 kb on + strand at 806.474 kb on + strand at 806.474 kb on + strand at 806.474 kb on + strand at 806.474 kb on + strand at 806.475 kb on - strand at 806.545 kb on - strand at 806.552 kb on - strand at 806.668 kb on + strand, within Sama_0651 at 806.669 kb on - strand, within Sama_0651 at 806.683 kb on - strand, within Sama_0651 at 806.696 kb on + strand, within Sama_0651 at 806.696 kb on + strand, within Sama_0651 at 806.696 kb on + strand, within Sama_0651 at 806.697 kb on - strand, within Sama_0651 at 806.705 kb on - strand, within Sama_0651 at 806.705 kb on - strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.716 kb on + strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.717 kb on - strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.720 kb on + strand, within Sama_0651 at 806.721 kb on - strand, within Sama_0651 at 806.721 kb on - strand, within Sama_0651 at 806.721 kb on - strand, within Sama_0651 at 806.721 kb on - strand, within Sama_0651 at 806.721 kb on - strand, within Sama_0651 at 806.721 kb on - strand, within Sama_0651 at 806.825 kb on + strand, within Sama_0651 at 806.825 kb on + strand, within Sama_0651 at 806.841 kb on + strand, within Sama_0651 at 806.841 kb on + strand, within Sama_0651 at 806.841 kb on + strand, within Sama_0651 at 806.841 kb on + strand, within Sama_0651 at 806.841 kb on + strand, within Sama_0651 at 806.841 kb on + strand, within Sama_0651 at 806.842 kb on - strand, within Sama_0651 at 806.842 kb on - strand, within Sama_0651 at 806.842 kb on - strand, within Sama_0651
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 804,359 + nrfA Sama_0648 0.35 +2.7 804,360 - nrfA Sama_0648 0.35 +0.7 804,410 + nrfA Sama_0648 0.38 +3.2 804,477 + nrfA Sama_0648 0.43 +0.3 804,477 + nrfA Sama_0648 0.43 +0.2 804,477 + nrfA Sama_0648 0.43 +1.1 804,477 + nrfA Sama_0648 0.43 +2.8 804,480 + nrfA Sama_0648 0.43 -0.9 804,480 + nrfA Sama_0648 0.43 +1.0 804,480 + nrfA Sama_0648 0.43 +1.9 804,481 - nrfA Sama_0648 0.43 -0.9 804,481 - nrfA Sama_0648 0.43 +0.5 804,561 + nrfA Sama_0648 0.49 -1.6 804,561 + nrfA Sama_0648 0.49 +0.5 804,561 + nrfA Sama_0648 0.49 -2.6 804,561 + nrfA Sama_0648 0.49 -1.9 804,561 + nrfA Sama_0648 0.49 -0.8 804,562 - nrfA Sama_0648 0.49 -1.1 804,562 - nrfA Sama_0648 0.49 -1.1 804,564 + nrfA Sama_0648 0.49 -1.6 804,564 + nrfA Sama_0648 0.49 -0.8 804,565 - nrfA Sama_0648 0.49 -0.8 804,660 - nrfA Sama_0648 0.56 +2.2 804,825 + nrfA Sama_0648 0.68 -1.1 804,825 + nrfA Sama_0648 0.68 +2.3 804,825 + nrfA Sama_0648 0.68 -0.6 804,826 - nrfA Sama_0648 0.68 -2.6 804,947 + nrfA Sama_0648 0.76 -1.3 804,947 + nrfA Sama_0648 0.76 +3.6 804,948 - nrfA Sama_0648 0.76 +0.3 804,987 + nrfA Sama_0648 0.79 -2.5 805,042 + nrfA Sama_0648 0.83 +1.4 805,125 - nrfA Sama_0648 0.89 +1.5 805,145 + -1.1 805,145 + -0.8 805,145 + +0.5 805,146 - -0.8 805,269 + -1.7 805,269 + -2.2 805,269 + -2.8 805,269 + +0.4 805,269 + +0.9 805,269 + -0.2 805,270 - -0.6 805,270 - +2.8 805,270 - +2.3 805,270 - -0.9 805,270 - +3.1 805,275 + -0.3 805,275 + -1.0 805,275 + +0.2 805,275 + -0.8 805,276 - +0.4 805,276 - -1.1 805,276 - +0.5 805,276 - -0.1 805,276 - +1.0 805,299 + +0.6 805,300 - +0.9 805,300 - -0.8 805,347 - -2.0 805,350 - -1.4 805,350 - -2.1 805,350 - -1.7 805,359 + -0.9 805,359 + -1.3 805,359 + +0.2 805,360 - +0.5 805,360 - -0.1 805,360 - +1.4 805,472 + Sama_0649 0.21 -2.5 805,472 + Sama_0649 0.21 +0.7 805,569 + Sama_0649 0.39 -0.1 805,569 + Sama_0649 0.39 -0.2 805,570 - Sama_0649 0.39 +1.0 805,570 - Sama_0649 0.39 -1.7 805,589 + Sama_0649 0.43 -0.4 805,589 + Sama_0649 0.43 +1.7 805,590 - Sama_0649 0.43 -0.3 805,622 - Sama_0649 0.49 +1.1 805,742 + Sama_0649 0.71 +2.3 805,766 + Sama_0649 0.76 -0.3 805,766 + Sama_0649 0.76 -0.6 805,766 + Sama_0649 0.76 +1.7 805,766 + Sama_0649 0.76 -1.8 805,766 + Sama_0649 0.76 -0.9 805,767 - Sama_0649 0.76 -0.6 805,767 - Sama_0649 0.76 -0.8 805,767 - Sama_0649 0.76 -1.6 805,768 + Sama_0649 0.76 -0.7 805,768 + Sama_0649 0.76 -3.2 805,769 - Sama_0649 0.76 -0.7 805,769 - Sama_0649 0.76 +5.2 805,790 + Sama_0649 0.80 -0.4 805,790 + Sama_0649 0.80 +0.4 805,830 + Sama_0649 0.87 -0.3 805,830 + Sama_0649 0.87 +0.7 805,830 + Sama_0649 0.87 -1.5 805,830 + Sama_0649 0.87 -1.1 805,831 - Sama_0649 0.88 +3.5 805,831 - Sama_0649 0.88 +3.6 805,831 - Sama_0649 0.88 +0.2 805,831 - Sama_0649 0.88 +1.7 805,831 - Sama_0649 0.88 -0.3 805,831 - Sama_0649 0.88 -1.1 805,831 - Sama_0649 0.88 -1.2 805,891 + -1.1 805,892 - -1.3 805,892 - -1.3 805,892 - -0.6 805,899 + +1.6 805,900 - -1.3 805,900 - -1.3 805,925 - -0.6 805,925 - -1.4 805,936 - -1.5 805,950 + -1.4 805,993 - -0.8 805,993 - +0.7 806,046 + +2.2 806,047 - -0.4 806,114 + +1.6 806,114 + +0.6 806,114 + -2.2 806,114 + -1.8 806,114 + +1.7 806,115 - -1.3 806,115 - -0.2 806,115 - -0.1 806,115 - +0.2 806,115 - -1.7 806,115 - -1.3 806,115 - -1.6 806,213 + Sama_0650 0.22 -1.3 806,218 + Sama_0650 0.24 -1.0 806,218 + Sama_0650 0.24 -1.6 806,218 + Sama_0650 0.24 +1.3 806,219 - Sama_0650 0.24 -2.1 806,219 - Sama_0650 0.24 -1.8 806,219 - Sama_0650 0.24 +0.2 806,226 + Sama_0650 0.26 +1.7 806,271 + Sama_0650 0.39 -2.8 806,271 + Sama_0650 0.39 -1.1 806,271 + Sama_0650 0.39 +2.5 806,271 + Sama_0650 0.39 +0.5 806,271 + Sama_0650 0.39 +1.9 806,271 + Sama_0650 0.39 -2.6 806,271 + Sama_0650 0.39 -0.8 806,272 - Sama_0650 0.40 -0.8 806,272 - Sama_0650 0.40 +1.7 806,272 - Sama_0650 0.40 -0.3 806,272 - Sama_0650 0.40 -2.6 806,288 + Sama_0650 0.44 -1.3 806,289 - Sama_0650 0.45 +0.8 806,289 - Sama_0650 0.45 -0.1 806,313 + Sama_0650 0.52 +0.2 806,313 + Sama_0650 0.52 -2.9 806,314 - Sama_0650 0.52 -0.8 806,329 + Sama_0650 0.56 -1.6 806,330 - Sama_0650 0.57 -0.3 806,370 + Sama_0650 0.68 +2.1 806,404 + Sama_0650 0.78 +0.1 806,425 - Sama_0650 0.85 +2.6 806,474 + -0.4 806,474 + -0.1 806,474 + +0.4 806,474 + -1.1 806,474 + +1.2 806,474 + +0.7 806,475 - -1.4 806,545 - -1.1 806,552 - -1.7 806,668 + Sama_0651 0.14 +1.5 806,669 - Sama_0651 0.14 -0.7 806,683 - Sama_0651 0.16 +2.7 806,696 + Sama_0651 0.17 +0.7 806,696 + Sama_0651 0.17 -0.5 806,696 + Sama_0651 0.17 -2.0 806,697 - Sama_0651 0.17 -0.4 806,705 - Sama_0651 0.17 +0.7 806,705 - Sama_0651 0.17 +1.7 806,716 + Sama_0651 0.18 -1.3 806,716 + Sama_0651 0.18 -1.1 806,716 + Sama_0651 0.18 +0.9 806,716 + Sama_0651 0.18 +0.7 806,716 + Sama_0651 0.18 -1.6 806,716 + Sama_0651 0.18 -1.8 806,716 + Sama_0651 0.18 -1.2 806,716 + Sama_0651 0.18 +3.9 806,716 + Sama_0651 0.18 +0.4 806,716 + Sama_0651 0.18 +1.3 806,716 + Sama_0651 0.18 +0.2 806,716 + Sama_0651 0.18 -1.5 806,716 + Sama_0651 0.18 -0.1 806,716 + Sama_0651 0.18 +0.9 806,716 + Sama_0651 0.18 -0.7 806,716 + Sama_0651 0.18 +0.1 806,716 + Sama_0651 0.18 -1.9 806,716 + Sama_0651 0.18 +1.6 806,716 + Sama_0651 0.18 -0.6 806,716 + Sama_0651 0.18 +3.4 806,716 + Sama_0651 0.18 +0.5 806,716 + Sama_0651 0.18 -0.3 806,716 + Sama_0651 0.18 +2.0 806,716 + Sama_0651 0.18 +0.5 806,716 + Sama_0651 0.18 -0.0 806,716 + Sama_0651 0.18 +0.5 806,716 + Sama_0651 0.18 +0.5 806,717 - Sama_0651 0.18 -0.7 806,717 - Sama_0651 0.18 -0.8 806,717 - Sama_0651 0.18 +0.4 806,717 - Sama_0651 0.18 +2.7 806,717 - Sama_0651 0.18 -1.7 806,717 - Sama_0651 0.18 -0.6 806,717 - Sama_0651 0.18 +1.2 806,717 - Sama_0651 0.18 -1.7 806,717 - Sama_0651 0.18 -0.7 806,717 - Sama_0651 0.18 +0.4 806,717 - Sama_0651 0.18 -1.5 806,717 - Sama_0651 0.18 +3.2 806,717 - Sama_0651 0.18 +1.7 806,717 - Sama_0651 0.18 -1.9 806,717 - Sama_0651 0.18 +0.3 806,720 + Sama_0651 0.19 -1.6 806,720 + Sama_0651 0.19 -1.4 806,720 + Sama_0651 0.19 +1.5 806,720 + Sama_0651 0.19 +2.1 806,720 + Sama_0651 0.19 +1.7 806,720 + Sama_0651 0.19 -1.6 806,720 + Sama_0651 0.19 -1.3 806,720 + Sama_0651 0.19 -0.7 806,721 - Sama_0651 0.19 +1.1 806,721 - Sama_0651 0.19 +0.1 806,721 - Sama_0651 0.19 -2.0 806,721 - Sama_0651 0.19 -1.1 806,721 - Sama_0651 0.19 -1.1 806,721 - Sama_0651 0.19 +0.2 806,825 + Sama_0651 0.27 +2.5 806,825 + Sama_0651 0.27 +5.1 806,841 + Sama_0651 0.28 +1.3 806,841 + Sama_0651 0.28 -0.6 806,841 + Sama_0651 0.28 -1.2 806,841 + Sama_0651 0.28 +2.0 806,841 + Sama_0651 0.28 +0.0 806,841 + Sama_0651 0.28 +0.7 806,842 - Sama_0651 0.28 -0.3 806,842 - Sama_0651 0.28 +2.1 806,842 - Sama_0651 0.28 -0.1
Or see this region's nucleotide sequence