Strain Fitness in Shewanella amazonensis SB2B around Sama_0470

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0468 and Sama_0469 overlap by 4 nucleotidesSama_0469 and Sama_0470 are separated by 5 nucleotidesSama_0470 and Sama_0471 are separated by 47 nucleotides Sama_0468: Sama_0468 - rod shape-determining protein MreC (RefSeq), at 574,277 to 575,206 _0468 Sama_0469: Sama_0469 - rod shape-determining protein MreD (RefSeq), at 575,203 to 575,691 _0469 Sama_0470: Sama_0470 - maf protein (RefSeq), at 575,697 to 576,281 _0470 Sama_0471: Sama_0471 - ribonuclease G (RefSeq), at 576,329 to 577,837 _0471 Position (kb) 575 576 577Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 575.679 kb on + strandat 575.679 kb on + strandat 575.689 kb on + strandat 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.838 kb on + strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.839 kb on - strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.894 kb on + strand, within Sama_0470at 575.895 kb on - strand, within Sama_0470at 575.895 kb on - strand, within Sama_0470at 575.895 kb on - strand, within Sama_0470at 575.895 kb on - strand, within Sama_0470at 575.895 kb on - strand, within Sama_0470at 575.895 kb on - strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.929 kb on + strand, within Sama_0470at 575.930 kb on - strand, within Sama_0470at 575.930 kb on - strand, within Sama_0470at 575.930 kb on - strand, within Sama_0470at 575.930 kb on - strand, within Sama_0470at 575.957 kb on + strand, within Sama_0470at 575.958 kb on - strand, within Sama_0470at 576.056 kb on + strand, within Sama_0470at 576.057 kb on - strand, within Sama_0470at 576.057 kb on - strand, within Sama_0470at 576.113 kb on + strand, within Sama_0470at 576.123 kb on + strand, within Sama_0470at 576.123 kb on + strand, within Sama_0470at 576.124 kb on - strand, within Sama_0470at 576.124 kb on - strand, within Sama_0470at 576.149 kb on + strand, within Sama_0470at 576.149 kb on + strand, within Sama_0470at 576.150 kb on - strand, within Sama_0470at 576.162 kb on + strand, within Sama_0470at 576.162 kb on + strand, within Sama_0470at 576.163 kb on - strand, within Sama_0470at 576.167 kb on + strand, within Sama_0470at 576.167 kb on + strand, within Sama_0470at 576.168 kb on - strand, within Sama_0470at 576.213 kb on + strand, within Sama_0470at 576.213 kb on + strand, within Sama_0470at 576.233 kb on - strandat 576.256 kb on + strandat 576.256 kb on + strandat 576.279 kb on + strandat 576.279 kb on + strandat 576.303 kb on + strandat 576.303 kb on + strandat 576.344 kb on - strandat 576.392 kb on - strandat 576.491 kb on - strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.494 kb on + strand, within Sama_0471at 576.495 kb on - strand, within Sama_0471at 576.495 kb on - strand, within Sama_0471at 576.495 kb on - strand, within Sama_0471at 576.559 kb on + strand, within Sama_0471at 576.560 kb on - strand, within Sama_0471at 576.573 kb on + strand, within Sama_0471at 576.693 kb on + strand, within Sama_0471at 576.763 kb on - strand, within Sama_0471at 576.763 kb on - strand, within Sama_0471at 576.766 kb on + strand, within Sama_0471at 576.767 kb on - strand, within Sama_0471at 576.767 kb on - strand, within Sama_0471at 576.802 kb on + strand, within Sama_0471at 576.841 kb on + strand, within Sama_0471at 576.841 kb on + strand, within Sama_0471at 576.841 kb on + strand, within Sama_0471at 576.841 kb on + strand, within Sama_0471at 576.842 kb on - strand, within Sama_0471at 576.874 kb on + strand, within Sama_0471at 576.874 kb on + strand, within Sama_0471at 576.875 kb on - strand, within Sama_0471at 576.875 kb on - strand, within Sama_0471at 576.875 kb on - strand, within Sama_0471at 576.875 kb on - strand, within Sama_0471at 576.877 kb on + strand, within Sama_0471at 576.877 kb on + strand, within Sama_0471at 576.878 kb on - strand, within Sama_0471at 576.878 kb on - strand, within Sama_0471at 576.957 kb on + strand, within Sama_0471at 576.958 kb on - strand, within Sama_0471at 576.995 kb on + strand, within Sama_0471at 577.026 kb on + strand, within Sama_0471at 577.057 kb on + strand, within Sama_0471at 577.057 kb on + strand, within Sama_0471at 577.145 kb on + strand, within Sama_0471at 577.175 kb on + strand, within Sama_0471at 577.175 kb on + strand, within Sama_0471at 577.176 kb on - strand, within Sama_0471at 577.176 kb on - strand, within Sama_0471at 577.176 kb on - strand, within Sama_0471at 577.239 kb on - strand, within Sama_0471at 577.279 kb on + strand, within Sama_0471at 577.280 kb on - strand, within Sama_0471

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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575,679 + +0.0
575,679 + +3.0
575,689 + -1.3
575,838 + Sama_0470 0.24 -0.6
575,838 + Sama_0470 0.24 -0.7
575,838 + Sama_0470 0.24 -2.2
575,838 + Sama_0470 0.24 -1.3
575,838 + Sama_0470 0.24 -0.2
575,838 + Sama_0470 0.24 -3.0
575,838 + Sama_0470 0.24 +0.5
575,838 + Sama_0470 0.24 -1.3
575,839 - Sama_0470 0.24 -1.9
575,839 - Sama_0470 0.24 -0.8
575,839 - Sama_0470 0.24 +0.5
575,839 - Sama_0470 0.24 +1.1
575,839 - Sama_0470 0.24 -1.1
575,839 - Sama_0470 0.24 -0.5
575,839 - Sama_0470 0.24 -1.7
575,894 + Sama_0470 0.34 +0.5
575,894 + Sama_0470 0.34 +4.0
575,894 + Sama_0470 0.34 -1.1
575,894 + Sama_0470 0.34 +1.1
575,894 + Sama_0470 0.34 +1.3
575,894 + Sama_0470 0.34 +1.6
575,894 + Sama_0470 0.34 +0.7
575,895 - Sama_0470 0.34 -0.3
575,895 - Sama_0470 0.34 +0.7
575,895 - Sama_0470 0.34 -0.3
575,895 - Sama_0470 0.34 +0.3
575,895 - Sama_0470 0.34 -0.9
575,895 - Sama_0470 0.34 +0.1
575,929 + Sama_0470 0.40 +0.1
575,929 + Sama_0470 0.40 +1.3
575,929 + Sama_0470 0.40 -0.6
575,929 + Sama_0470 0.40 +1.2
575,929 + Sama_0470 0.40 -0.1
575,929 + Sama_0470 0.40 -2.0
575,929 + Sama_0470 0.40 -0.9
575,930 - Sama_0470 0.40 -0.7
575,930 - Sama_0470 0.40 -1.3
575,930 - Sama_0470 0.40 -1.5
575,930 - Sama_0470 0.40 +1.0
575,957 + Sama_0470 0.44 -0.9
575,958 - Sama_0470 0.45 -1.4
576,056 + Sama_0470 0.61 +3.6
576,057 - Sama_0470 0.62 +0.6
576,057 - Sama_0470 0.62 -1.8
576,113 + Sama_0470 0.71 +0.1
576,123 + Sama_0470 0.73 -1.1
576,123 + Sama_0470 0.73 -1.8
576,124 - Sama_0470 0.73 -1.9
576,124 - Sama_0470 0.73 -1.0
576,149 + Sama_0470 0.77 -0.2
576,149 + Sama_0470 0.77 -1.3
576,150 - Sama_0470 0.77 -1.3
576,162 + Sama_0470 0.79 -2.7
576,162 + Sama_0470 0.79 -1.2
576,163 - Sama_0470 0.80 -0.0
576,167 + Sama_0470 0.80 -1.5
576,167 + Sama_0470 0.80 +0.7
576,168 - Sama_0470 0.81 -1.6
576,213 + Sama_0470 0.88 -0.7
576,213 + Sama_0470 0.88 -0.6
576,233 - -1.5
576,256 + +4.4
576,256 + -3.3
576,279 + -0.6
576,279 + -0.4
576,303 + -0.7
576,303 + +1.7
576,344 - -0.3
576,392 - -0.9
576,491 - Sama_0471 0.11 -0.9
576,494 + Sama_0471 0.11 -1.9
576,494 + Sama_0471 0.11 +1.7
576,494 + Sama_0471 0.11 -0.9
576,494 + Sama_0471 0.11 -0.6
576,494 + Sama_0471 0.11 -1.4
576,494 + Sama_0471 0.11 +0.9
576,494 + Sama_0471 0.11 -0.3
576,495 - Sama_0471 0.11 -0.3
576,495 - Sama_0471 0.11 -1.6
576,495 - Sama_0471 0.11 +1.1
576,559 + Sama_0471 0.15 -0.9
576,560 - Sama_0471 0.15 -0.3
576,573 + Sama_0471 0.16 -0.8
576,693 + Sama_0471 0.24 -0.3
576,763 - Sama_0471 0.29 -2.0
576,763 - Sama_0471 0.29 -1.7
576,766 + Sama_0471 0.29 -0.3
576,767 - Sama_0471 0.29 -1.1
576,767 - Sama_0471 0.29 -2.7
576,802 + Sama_0471 0.31 -0.9
576,841 + Sama_0471 0.34 -0.1
576,841 + Sama_0471 0.34 -2.5
576,841 + Sama_0471 0.34 -1.1
576,841 + Sama_0471 0.34 -1.7
576,842 - Sama_0471 0.34 +0.1
576,874 + Sama_0471 0.36 -0.2
576,874 + Sama_0471 0.36 -1.9
576,875 - Sama_0471 0.36 -0.9
576,875 - Sama_0471 0.36 -2.2
576,875 - Sama_0471 0.36 -2.5
576,875 - Sama_0471 0.36 -1.3
576,877 + Sama_0471 0.36 -0.3
576,877 + Sama_0471 0.36 -1.7
576,878 - Sama_0471 0.36 -0.9
576,878 - Sama_0471 0.36 -0.9
576,957 + Sama_0471 0.42 -1.6
576,958 - Sama_0471 0.42 -0.6
576,995 + Sama_0471 0.44 -1.1
577,026 + Sama_0471 0.46 +0.3
577,057 + Sama_0471 0.48 -2.9
577,057 + Sama_0471 0.48 +0.1
577,145 + Sama_0471 0.54 -0.5
577,175 + Sama_0471 0.56 -3.2
577,175 + Sama_0471 0.56 +0.4
577,176 - Sama_0471 0.56 -2.6
577,176 - Sama_0471 0.56 +1.7
577,176 - Sama_0471 0.56 +0.3
577,239 - Sama_0471 0.60 -2.4
577,279 + Sama_0471 0.63 -0.3
577,280 - Sama_0471 0.63 -1.6

Or see this region's nucleotide sequence