Strain Fitness in Shewanella amazonensis SB2B around Sama_0467

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0466 and Sama_0467 are separated by 213 nucleotidesSama_0467 and Sama_0468 are separated by 45 nucleotidesSama_0468 and Sama_0469 overlap by 4 nucleotides Sama_0466: Sama_0466 - MSHA biogenesis protein MshQ (RefSeq), at 570,455 to 572,968 _0466 Sama_0467: Sama_0467 - rod shape-determining protein MreB (RefSeq), at 573,182 to 574,231 _0467 Sama_0468: Sama_0468 - rod shape-determining protein MreC (RefSeq), at 574,277 to 575,206 _0468 Sama_0469: Sama_0469 - rod shape-determining protein MreD (RefSeq), at 575,203 to 575,691 _0469 Position (kb) 573 574 575Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 572.185 kb on - strand, within Sama_0466at 572.221 kb on - strand, within Sama_0466at 572.383 kb on + strand, within Sama_0466at 572.404 kb on + strand, within Sama_0466at 572.405 kb on - strand, within Sama_0466at 572.405 kb on - strand, within Sama_0466at 572.440 kb on + strand, within Sama_0466at 572.470 kb on + strand, within Sama_0466at 572.470 kb on + strand, within Sama_0466at 572.542 kb on + strand, within Sama_0466at 572.543 kb on - strand, within Sama_0466at 572.543 kb on - strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.545 kb on + strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.546 kb on - strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.549 kb on + strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.550 kb on - strand, within Sama_0466at 572.575 kb on + strand, within Sama_0466at 572.575 kb on + strand, within Sama_0466at 572.575 kb on + strand, within Sama_0466at 572.576 kb on - strand, within Sama_0466at 572.576 kb on - strand, within Sama_0466at 572.576 kb on - strand, within Sama_0466at 572.576 kb on - strand, within Sama_0466at 572.585 kb on + strand, within Sama_0466at 572.586 kb on - strand, within Sama_0466at 572.586 kb on - strand, within Sama_0466at 572.586 kb on - strand, within Sama_0466at 572.594 kb on + strand, within Sama_0466at 572.594 kb on + strand, within Sama_0466at 572.595 kb on - strand, within Sama_0466at 572.642 kb on - strand, within Sama_0466at 572.653 kb on - strand, within Sama_0466at 572.653 kb on - strand, within Sama_0466at 572.653 kb on - strand, within Sama_0466at 572.653 kb on - strand, within Sama_0466at 572.675 kb on - strand, within Sama_0466at 572.690 kb on + strand, within Sama_0466at 572.691 kb on - strand, within Sama_0466at 572.696 kb on + strand, within Sama_0466at 572.697 kb on - strand, within Sama_0466at 572.725 kb on + strandat 572.725 kb on + strandat 572.804 kb on + strandat 572.855 kb on + strandat 572.856 kb on - strandat 572.945 kb on - strandat 572.979 kb on + strandat 572.995 kb on + strandat 572.996 kb on - strandat 574.276 kb on + strandat 574.276 kb on + strandat 574.276 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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572,185 - Sama_0466 0.69 -0.6
572,221 - Sama_0466 0.70 +0.4
572,383 + Sama_0466 0.77 -1.0
572,404 + Sama_0466 0.78 +1.2
572,405 - Sama_0466 0.78 +1.5
572,405 - Sama_0466 0.78 +3.6
572,440 + Sama_0466 0.79 -2.5
572,470 + Sama_0466 0.80 -1.3
572,470 + Sama_0466 0.80 -0.1
572,542 + Sama_0466 0.83 -1.8
572,543 - Sama_0466 0.83 -0.3
572,543 - Sama_0466 0.83 +4.3
572,545 + Sama_0466 0.83 -1.9
572,545 + Sama_0466 0.83 -1.1
572,545 + Sama_0466 0.83 -1.6
572,545 + Sama_0466 0.83 +3.0
572,545 + Sama_0466 0.83 +0.2
572,545 + Sama_0466 0.83 -1.7
572,545 + Sama_0466 0.83 +0.3
572,545 + Sama_0466 0.83 -0.4
572,546 - Sama_0466 0.83 -0.9
572,546 - Sama_0466 0.83 -0.6
572,546 - Sama_0466 0.83 +0.1
572,546 - Sama_0466 0.83 -2.1
572,546 - Sama_0466 0.83 +0.6
572,546 - Sama_0466 0.83 +0.1
572,546 - Sama_0466 0.83 -1.0
572,546 - Sama_0466 0.83 +0.4
572,546 - Sama_0466 0.83 -1.3
572,546 - Sama_0466 0.83 -1.1
572,546 - Sama_0466 0.83 +0.7
572,546 - Sama_0466 0.83 -1.9
572,546 - Sama_0466 0.83 +1.4
572,546 - Sama_0466 0.83 -1.7
572,549 + Sama_0466 0.83 +3.0
572,549 + Sama_0466 0.83 +1.7
572,549 + Sama_0466 0.83 -0.9
572,549 + Sama_0466 0.83 -0.4
572,549 + Sama_0466 0.83 +0.2
572,549 + Sama_0466 0.83 +5.1
572,549 + Sama_0466 0.83 -2.5
572,549 + Sama_0466 0.83 -0.6
572,549 + Sama_0466 0.83 +0.1
572,549 + Sama_0466 0.83 -2.1
572,549 + Sama_0466 0.83 -1.6
572,549 + Sama_0466 0.83 +1.7
572,550 - Sama_0466 0.83 -2.2
572,550 - Sama_0466 0.83 +3.0
572,550 - Sama_0466 0.83 -0.1
572,550 - Sama_0466 0.83 -1.1
572,550 - Sama_0466 0.83 +1.2
572,550 - Sama_0466 0.83 -1.1
572,550 - Sama_0466 0.83 -2.1
572,550 - Sama_0466 0.83 -0.5
572,550 - Sama_0466 0.83 +2.1
572,550 - Sama_0466 0.83 +0.7
572,550 - Sama_0466 0.83 -2.7
572,550 - Sama_0466 0.83 +3.4
572,550 - Sama_0466 0.83 -0.6
572,575 + Sama_0466 0.84 -1.3
572,575 + Sama_0466 0.84 -0.9
572,575 + Sama_0466 0.84 -0.3
572,576 - Sama_0466 0.84 -2.0
572,576 - Sama_0466 0.84 +3.2
572,576 - Sama_0466 0.84 +3.2
572,576 - Sama_0466 0.84 -0.9
572,585 + Sama_0466 0.85 +0.1
572,586 - Sama_0466 0.85 +1.2
572,586 - Sama_0466 0.85 +0.7
572,586 - Sama_0466 0.85 -1.4
572,594 + Sama_0466 0.85 +0.5
572,594 + Sama_0466 0.85 +1.9
572,595 - Sama_0466 0.85 -0.6
572,642 - Sama_0466 0.87 -1.2
572,653 - Sama_0466 0.87 +0.4
572,653 - Sama_0466 0.87 +0.5
572,653 - Sama_0466 0.87 -1.6
572,653 - Sama_0466 0.87 -0.4
572,675 - Sama_0466 0.88 -1.9
572,690 + Sama_0466 0.89 -0.2
572,691 - Sama_0466 0.89 -2.1
572,696 + Sama_0466 0.89 +2.2
572,697 - Sama_0466 0.89 +0.4
572,725 + -1.4
572,725 + +0.7
572,804 + -2.6
572,855 + -1.3
572,856 - +0.8
572,945 - -0.2
572,979 + -0.9
572,995 + +0.1
572,996 - -1.9
574,276 + +3.1
574,276 + +2.4
574,276 + +0.1

Or see this region's nucleotide sequence