Strain Fitness in Shewanella amazonensis SB2B around Sama_0282

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0281 and Sama_0282 overlap by 11 nucleotidesSama_0282 and Sama_0283 are separated by 25 nucleotidesSama_0283 and Sama_0284 are separated by 290 nucleotides Sama_0281: Sama_0281 - modification methylase (cytosine-specific methyltransferase (RefSeq), at 328,984 to 330,546 _0281 Sama_0282: Sama_0282 - putative DNA mismatch endonuclease protein (RefSeq), at 330,536 to 331,021 _0282 Sama_0283: Sama_0283 - hypothetical protein (RefSeq), at 331,047 to 331,655 _0283 Sama_0284: Sama_0284 - sodium/alanine symporter (RefSeq), at 331,946 to 333,379 _0284 Position (kb) 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 330.554 kb on + strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.686 kb on - strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.700 kb on - strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.969 kb on - strand, within Sama_0282at 331.030 kb on - strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.049 kb on - strandat 331.059 kb on + strandat 331.059 kb on + strandat 331.060 kb on - strandat 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.192 kb on + strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.202 kb on + strand, within Sama_0283at 331.253 kb on + strand, within Sama_0283at 331.263 kb on - strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.426 kb on + strand, within Sama_0283at 331.434 kb on + strand, within Sama_0283at 331.435 kb on - strand, within Sama_0283at 331.454 kb on + strand, within Sama_0283at 331.474 kb on - strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.655 kb on + strandat 331.655 kb on + strandat 331.655 kb on + strandat 331.656 kb on - strandat 331.668 kb on + strandat 331.668 kb on + strandat 331.668 kb on + strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.694 kb on - strandat 331.703 kb on + strandat 331.741 kb on + strandat 331.741 kb on + strandat 331.741 kb on - strandat 331.742 kb on - strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.784 kb on + strandat 331.785 kb on - strandat 331.809 kb on - strandat 331.809 kb on - strandat 331.830 kb on - strandat 331.837 kb on - strandat 331.843 kb on + strandat 331.889 kb on + strandat 331.889 kb on + strandat 331.890 kb on - strandat 331.890 kb on - strandat 331.901 kb on - strandat 331.908 kb on + strandat 331.908 kb on + strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.929 kb on - strandat 331.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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330,554 + -0.6
330,555 - +3.6
330,555 - +1.0
330,555 - -0.6
330,555 - +0.4
330,555 - -1.3
330,686 - Sama_0282 0.31 +1.0
330,689 + Sama_0282 0.31 -1.1
330,689 + Sama_0282 0.31 -1.4
330,689 + Sama_0282 0.31 +0.2
330,690 - Sama_0282 0.32 +2.5
330,690 - Sama_0282 0.32 -0.6
330,700 - Sama_0282 0.34 -0.6
330,708 + Sama_0282 0.35 -1.3
330,708 + Sama_0282 0.35 -2.8
330,709 - Sama_0282 0.36 -2.3
330,709 - Sama_0282 0.36 +0.1
330,709 - Sama_0282 0.36 -0.8
330,859 + Sama_0282 0.66 -1.0
330,859 + Sama_0282 0.66 -1.2
330,859 + Sama_0282 0.66 -1.4
330,859 + Sama_0282 0.66 -1.3
330,860 - Sama_0282 0.67 -1.1
330,860 - Sama_0282 0.67 +0.9
330,860 - Sama_0282 0.67 +4.4
330,860 - Sama_0282 0.67 -1.4
330,860 - Sama_0282 0.67 -2.3
330,968 + Sama_0282 0.89 -0.3
330,968 + Sama_0282 0.89 +1.4
330,969 - Sama_0282 0.89 +1.5
331,030 - -0.3
331,042 + -1.7
331,042 + -2.3
331,042 + +1.0
331,049 - +0.0
331,059 + +1.4
331,059 + -1.1
331,060 - +0.8
331,154 + Sama_0283 0.18 -1.4
331,154 + Sama_0283 0.18 +3.6
331,154 + Sama_0283 0.18 -0.7
331,154 + Sama_0283 0.18 -2.3
331,154 + Sama_0283 0.18 -0.1
331,154 + Sama_0283 0.18 -1.7
331,154 + Sama_0283 0.18 +0.7
331,155 - Sama_0283 0.18 -2.0
331,155 - Sama_0283 0.18 +1.7
331,155 - Sama_0283 0.18 -0.3
331,155 - Sama_0283 0.18 +4.2
331,155 - Sama_0283 0.18 -0.8
331,155 - Sama_0283 0.18 -0.6
331,155 - Sama_0283 0.18 -0.3
331,192 + Sama_0283 0.24 -0.7
331,193 - Sama_0283 0.24 -1.5
331,193 - Sama_0283 0.24 -1.3
331,193 - Sama_0283 0.24 +1.3
331,193 - Sama_0283 0.24 -0.3
331,193 - Sama_0283 0.24 +0.2
331,202 + Sama_0283 0.25 +1.0
331,253 + Sama_0283 0.34 -0.3
331,263 - Sama_0283 0.35 +3.5
331,350 + Sama_0283 0.50 +1.0
331,350 + Sama_0283 0.50 +1.0
331,350 + Sama_0283 0.50 +1.9
331,350 + Sama_0283 0.50 +2.0
331,350 + Sama_0283 0.50 -2.4
331,350 + Sama_0283 0.50 -0.4
331,350 + Sama_0283 0.50 -0.8
331,350 + Sama_0283 0.50 -0.8
331,350 + Sama_0283 0.50 -2.0
331,350 + Sama_0283 0.50 +1.0
331,351 - Sama_0283 0.50 +0.7
331,351 - Sama_0283 0.50 -0.3
331,351 - Sama_0283 0.50 -2.2
331,351 - Sama_0283 0.50 +0.3
331,356 + Sama_0283 0.51 -2.8
331,356 + Sama_0283 0.51 -1.3
331,426 + Sama_0283 0.62 -0.1
331,434 + Sama_0283 0.64 +0.0
331,435 - Sama_0283 0.64 -0.7
331,454 + Sama_0283 0.67 -2.4
331,474 - Sama_0283 0.70 +0.6
331,521 + Sama_0283 0.78 -1.1
331,521 + Sama_0283 0.78 -1.0
331,521 + Sama_0283 0.78 +1.0
331,521 + Sama_0283 0.78 +4.1
331,522 - Sama_0283 0.78 -2.2
331,522 - Sama_0283 0.78 +1.0
331,522 - Sama_0283 0.78 +0.3
331,522 - Sama_0283 0.78 +1.7
331,522 - Sama_0283 0.78 +0.9
331,522 - Sama_0283 0.78 -2.3
331,522 - Sama_0283 0.78 -1.3
331,522 - Sama_0283 0.78 -2.1
331,569 + Sama_0283 0.86 -1.3
331,569 + Sama_0283 0.86 +0.4
331,569 + Sama_0283 0.86 +0.3
331,570 - Sama_0283 0.86 +1.2
331,570 - Sama_0283 0.86 -1.2
331,570 - Sama_0283 0.86 -1.2
331,574 + Sama_0283 0.87 -1.9
331,574 + Sama_0283 0.87 +3.9
331,574 + Sama_0283 0.87 +0.3
331,574 + Sama_0283 0.87 -0.4
331,574 + Sama_0283 0.87 -0.3
331,574 + Sama_0283 0.87 +0.3
331,575 - Sama_0283 0.87 -0.5
331,575 - Sama_0283 0.87 -1.3
331,575 - Sama_0283 0.87 -1.3
331,655 + -1.1
331,655 + -0.2
331,655 + +1.3
331,656 - +3.6
331,668 + -1.4
331,668 + +0.8
331,668 + +0.7
331,669 - -2.4
331,669 - -0.1
331,669 - +2.1
331,669 - -2.3
331,694 - -2.5
331,703 + -1.3
331,741 + +1.2
331,741 + +2.0
331,741 - +1.7
331,742 - -0.3
331,746 + -0.3
331,746 + -0.3
331,746 + -1.1
331,746 + +1.2
331,784 + -1.3
331,785 - +0.3
331,809 - +1.0
331,809 - -0.1
331,830 - -1.3
331,837 - +1.7
331,843 + +2.1
331,889 + -2.6
331,889 + -1.5
331,890 - +0.2
331,890 - +0.2
331,901 - -1.0
331,908 + +0.9
331,908 + -0.3
331,909 - -1.1
331,909 - -1.3
331,909 - -2.2
331,909 - +0.7
331,909 - -0.3
331,929 - +0.2
331,933 + -1.6

Or see this region's nucleotide sequence