Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0133 and Sama_0134 overlap by 11 nucleotides Sama_0134 and Sama_0135 overlap by 1 nucleotides Sama_0135 and Sama_0136 are separated by 444 nucleotides
Sama_0133: Sama_0133 - hypothetical protein (RefSeq), at 150,362 to 151,033
_0133
Sama_0134: Sama_0134 - hypothetical protein (RefSeq), at 151,023 to 151,580
_0134
Sama_0135: Sama_0135 - hypothetical protein (RefSeq), at 151,580 to 152,323
_0135
Sama_0136: Sama_0136 - putative metal dependent phosphohydrolase (RefSeq), at 152,768 to 153,964
_0136
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 150.589 kb on + strand, within Sama_0133 at 150.589 kb on + strand, within Sama_0133 at 150.589 kb on + strand, within Sama_0133 at 150.590 kb on - strand, within Sama_0133 at 150.602 kb on + strand, within Sama_0133 at 150.602 kb on + strand, within Sama_0133 at 150.603 kb on - strand, within Sama_0133 at 150.686 kb on + strand, within Sama_0133 at 150.694 kb on + strand, within Sama_0133 at 150.694 kb on + strand, within Sama_0133 at 150.694 kb on + strand, within Sama_0133 at 150.695 kb on - strand, within Sama_0133 at 150.695 kb on - strand, within Sama_0133 at 150.696 kb on + strand, within Sama_0133 at 150.696 kb on + strand, within Sama_0133 at 150.697 kb on - strand, within Sama_0133 at 150.697 kb on - strand, within Sama_0133 at 150.697 kb on - strand, within Sama_0133 at 150.697 kb on - strand, within Sama_0133 at 150.697 kb on - strand, within Sama_0133 at 150.697 kb on - strand, within Sama_0133 at 150.798 kb on + strand, within Sama_0133 at 150.868 kb on + strand, within Sama_0133 at 150.868 kb on + strand, within Sama_0133 at 150.868 kb on + strand, within Sama_0133 at 150.868 kb on + strand, within Sama_0133 at 150.869 kb on - strand, within Sama_0133 at 150.869 kb on - strand, within Sama_0133 at 150.898 kb on + strand, within Sama_0133 at 150.898 kb on + strand, within Sama_0133 at 150.898 kb on + strand, within Sama_0133 at 150.899 kb on - strand, within Sama_0133 at 150.899 kb on - strand, within Sama_0133 at 150.906 kb on + strand, within Sama_0133 at 151.010 kb on - strand at 151.022 kb on + strand at 151.022 kb on + strand at 151.022 kb on + strand at 151.023 kb on - strand at 151.023 kb on - strand at 151.042 kb on + strand at 151.042 kb on + strand at 151.043 kb on - strand at 151.155 kb on + strand, within Sama_0134 at 151.247 kb on + strand, within Sama_0134 at 151.422 kb on - strand, within Sama_0134 at 151.456 kb on + strand, within Sama_0134 at 151.457 kb on - strand, within Sama_0134 at 151.473 kb on + strand, within Sama_0134 at 151.556 kb on + strand at 151.556 kb on + strand at 151.556 kb on + strand at 151.556 kb on + strand at 151.557 kb on - strand at 151.557 kb on - strand at 151.557 kb on - strand at 151.598 kb on + strand at 151.598 kb on + strand at 151.598 kb on + strand at 151.599 kb on - strand at 151.599 kb on - strand at 151.653 kb on + strand at 151.653 kb on + strand at 151.653 kb on + strand at 151.653 kb on + strand at 151.654 kb on - strand at 151.654 kb on - strand at 151.654 kb on - strand at 151.654 kb on - strand at 151.674 kb on + strand, within Sama_0135 at 151.674 kb on + strand, within Sama_0135 at 151.674 kb on + strand, within Sama_0135 at 151.674 kb on + strand, within Sama_0135 at 151.674 kb on + strand, within Sama_0135 at 151.674 kb on + strand, within Sama_0135 at 151.675 kb on - strand, within Sama_0135 at 151.675 kb on - strand, within Sama_0135 at 151.675 kb on - strand, within Sama_0135 at 151.675 kb on - strand, within Sama_0135 at 151.732 kb on - strand, within Sama_0135 at 151.748 kb on + strand, within Sama_0135 at 151.748 kb on + strand, within Sama_0135 at 151.748 kb on + strand, within Sama_0135 at 151.749 kb on - strand, within Sama_0135 at 151.749 kb on - strand, within Sama_0135 at 151.782 kb on + strand, within Sama_0135 at 151.783 kb on - strand, within Sama_0135 at 151.794 kb on + strand, within Sama_0135 at 151.795 kb on - strand, within Sama_0135 at 151.810 kb on - strand, within Sama_0135 at 151.878 kb on + strand, within Sama_0135 at 151.878 kb on + strand, within Sama_0135 at 151.878 kb on + strand, within Sama_0135 at 151.878 kb on + strand, within Sama_0135 at 151.878 kb on + strand, within Sama_0135 at 151.878 kb on + strand, within Sama_0135 at 151.879 kb on - strand, within Sama_0135 at 151.879 kb on - strand, within Sama_0135 at 151.879 kb on - strand, within Sama_0135 at 151.879 kb on - strand, within Sama_0135 at 151.965 kb on - strand, within Sama_0135 at 151.965 kb on - strand, within Sama_0135 at 151.965 kb on - strand, within Sama_0135 at 152.028 kb on + strand, within Sama_0135 at 152.028 kb on + strand, within Sama_0135 at 152.028 kb on + strand, within Sama_0135 at 152.028 kb on + strand, within Sama_0135 at 152.029 kb on - strand, within Sama_0135 at 152.029 kb on - strand, within Sama_0135 at 152.090 kb on + strand, within Sama_0135 at 152.090 kb on + strand, within Sama_0135 at 152.090 kb on + strand, within Sama_0135 at 152.090 kb on + strand, within Sama_0135 at 152.090 kb on + strand, within Sama_0135 at 152.090 kb on + strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.091 kb on - strand, within Sama_0135 at 152.227 kb on + strand, within Sama_0135 at 152.227 kb on + strand, within Sama_0135 at 152.227 kb on + strand, within Sama_0135 at 152.228 kb on - strand, within Sama_0135 at 152.318 kb on + strand at 152.354 kb on - strand at 152.460 kb on + strand at 152.462 kb on + strand at 152.462 kb on + strand at 152.462 kb on + strand at 152.462 kb on + strand at 152.463 kb on - strand at 152.463 kb on - strand at 152.463 kb on - strand at 152.518 kb on + strand at 152.518 kb on + strand at 152.518 kb on + strand at 152.519 kb on - strand at 152.587 kb on - strand at 152.612 kb on + strand at 152.612 kb on + strand at 152.612 kb on + strand at 152.612 kb on + strand at 152.612 kb on + strand at 152.613 kb on - strand at 152.613 kb on - strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.642 kb on + strand at 152.643 kb on - strand at 152.643 kb on - strand at 152.643 kb on - strand at 152.643 kb on - strand at 152.643 kb on - strand at 152.643 kb on - strand at 152.643 kb on - strand at 152.687 kb on - strand at 152.712 kb on + strand at 152.722 kb on + strand at 152.722 kb on + strand at 152.723 kb on - strand at 152.723 kb on - strand at 152.723 kb on - strand at 152.728 kb on + strand at 152.728 kb on + strand at 152.728 kb on + strand at 152.728 kb on + strand at 152.728 kb on + strand at 152.729 kb on - strand at 152.729 kb on - strand at 152.729 kb on - strand at 152.729 kb on - strand at 152.730 kb on + strand at 152.730 kb on + strand at 152.730 kb on + strand at 152.731 kb on - strand at 152.731 kb on - strand at 152.731 kb on - strand at 152.846 kb on - strand at 152.929 kb on + strand, within Sama_0136 at 152.929 kb on + strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.101 kb on - strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.111 kb on + strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.112 kb on - strand, within Sama_0136 at 153.147 kb on + strand, within Sama_0136 at 153.147 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.175 kb on + strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.176 kb on - strand, within Sama_0136 at 153.246 kb on - strand, within Sama_0136 at 153.246 kb on - strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.270 kb on + strand, within Sama_0136 at 153.271 kb on - strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.299 kb on + strand, within Sama_0136 at 153.300 kb on - strand, within Sama_0136 at 153.300 kb on - strand, within Sama_0136
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 150,589 + Sama_0133 0.34 +3.2 150,589 + Sama_0133 0.34 -0.8 150,589 + Sama_0133 0.34 -1.9 150,590 - Sama_0133 0.34 -0.5 150,602 + Sama_0133 0.36 +1.4 150,602 + Sama_0133 0.36 -0.2 150,603 - Sama_0133 0.36 -2.0 150,686 + Sama_0133 0.48 +2.9 150,694 + Sama_0133 0.49 +3.0 150,694 + Sama_0133 0.49 +0.7 150,694 + Sama_0133 0.49 +0.8 150,695 - Sama_0133 0.50 +2.7 150,695 - Sama_0133 0.50 -2.0 150,696 + Sama_0133 0.50 -0.5 150,696 + Sama_0133 0.50 +0.1 150,697 - Sama_0133 0.50 +0.4 150,697 - Sama_0133 0.50 +0.9 150,697 - Sama_0133 0.50 -0.5 150,697 - Sama_0133 0.50 -0.2 150,697 - Sama_0133 0.50 -0.6 150,697 - Sama_0133 0.50 +0.2 150,798 + Sama_0133 0.65 +3.0 150,868 + Sama_0133 0.75 +0.8 150,868 + Sama_0133 0.75 +3.2 150,868 + Sama_0133 0.75 +1.4 150,868 + Sama_0133 0.75 -1.2 150,869 - Sama_0133 0.75 +0.2 150,869 - Sama_0133 0.75 -1.5 150,898 + Sama_0133 0.80 -0.5 150,898 + Sama_0133 0.80 +0.8 150,898 + Sama_0133 0.80 -1.2 150,899 - Sama_0133 0.80 +3.2 150,899 - Sama_0133 0.80 +1.8 150,906 + Sama_0133 0.81 +0.3 151,010 - +0.2 151,022 + +3.2 151,022 + -0.9 151,022 + +2.4 151,023 - +2.9 151,023 - +0.6 151,042 + +0.2 151,042 + -2.1 151,043 - -1.0 151,155 + Sama_0134 0.24 +5.3 151,247 + Sama_0134 0.40 +0.8 151,422 - Sama_0134 0.72 -2.3 151,456 + Sama_0134 0.78 +0.1 151,457 - Sama_0134 0.78 -1.2 151,473 + Sama_0134 0.81 -2.2 151,556 + -2.2 151,556 + -1.0 151,556 + -0.8 151,556 + +0.2 151,557 - -1.8 151,557 - +0.5 151,557 - -0.4 151,598 + +1.8 151,598 + +1.4 151,598 + -0.5 151,599 - -0.8 151,599 - -2.8 151,653 + -2.0 151,653 + +0.5 151,653 + -1.8 151,653 + -1.4 151,654 - +1.5 151,654 - -1.6 151,654 - +3.9 151,654 - -0.0 151,674 + Sama_0135 0.13 -1.0 151,674 + Sama_0135 0.13 -2.8 151,674 + Sama_0135 0.13 +0.6 151,674 + Sama_0135 0.13 +2.1 151,674 + Sama_0135 0.13 +0.6 151,674 + Sama_0135 0.13 -0.9 151,675 - Sama_0135 0.13 -1.9 151,675 - Sama_0135 0.13 -0.2 151,675 - Sama_0135 0.13 +0.1 151,675 - Sama_0135 0.13 -0.4 151,732 - Sama_0135 0.20 -0.5 151,748 + Sama_0135 0.23 -0.9 151,748 + Sama_0135 0.23 +1.2 151,748 + Sama_0135 0.23 +0.2 151,749 - Sama_0135 0.23 -0.9 151,749 - Sama_0135 0.23 -3.1 151,782 + Sama_0135 0.27 +0.6 151,783 - Sama_0135 0.27 +0.1 151,794 + Sama_0135 0.29 +1.2 151,795 - Sama_0135 0.29 +2.4 151,810 - Sama_0135 0.31 +1.6 151,878 + Sama_0135 0.40 +2.1 151,878 + Sama_0135 0.40 -0.4 151,878 + Sama_0135 0.40 +1.8 151,878 + Sama_0135 0.40 +0.6 151,878 + Sama_0135 0.40 -0.5 151,878 + Sama_0135 0.40 -0.2 151,879 - Sama_0135 0.40 -2.5 151,879 - Sama_0135 0.40 +3.2 151,879 - Sama_0135 0.40 -0.1 151,879 - Sama_0135 0.40 +0.6 151,965 - Sama_0135 0.52 +2.4 151,965 - Sama_0135 0.52 +1.0 151,965 - Sama_0135 0.52 +0.2 152,028 + Sama_0135 0.60 -0.0 152,028 + Sama_0135 0.60 -1.9 152,028 + Sama_0135 0.60 -2.5 152,028 + Sama_0135 0.60 -1.0 152,029 - Sama_0135 0.60 -1.8 152,029 - Sama_0135 0.60 -0.6 152,090 + Sama_0135 0.69 -2.1 152,090 + Sama_0135 0.69 +0.1 152,090 + Sama_0135 0.69 -0.2 152,090 + Sama_0135 0.69 +1.5 152,090 + Sama_0135 0.69 -0.5 152,090 + Sama_0135 0.69 -0.4 152,091 - Sama_0135 0.69 -1.2 152,091 - Sama_0135 0.69 -1.2 152,091 - Sama_0135 0.69 +0.5 152,091 - Sama_0135 0.69 -0.9 152,091 - Sama_0135 0.69 -0.8 152,091 - Sama_0135 0.69 -1.8 152,091 - Sama_0135 0.69 -0.8 152,091 - Sama_0135 0.69 -0.2 152,227 + Sama_0135 0.87 +0.8 152,227 + Sama_0135 0.87 -0.6 152,227 + Sama_0135 0.87 -1.0 152,228 - Sama_0135 0.87 -0.4 152,318 + -1.0 152,354 - +1.5 152,460 + +0.0 152,462 + +1.1 152,462 + +0.6 152,462 + -1.4 152,462 + -1.5 152,463 - +1.5 152,463 - -1.4 152,463 - -2.0 152,518 + +0.1 152,518 + +0.3 152,518 + +0.4 152,519 - -1.9 152,587 - -1.0 152,612 + +0.1 152,612 + -1.5 152,612 + -1.8 152,612 + +0.7 152,612 + +1.8 152,613 - -1.8 152,613 - +0.6 152,642 + +0.0 152,642 + -2.9 152,642 + -2.1 152,642 + +0.4 152,642 + +0.0 152,642 + -0.2 152,642 + -2.2 152,642 + +1.4 152,642 + -0.9 152,642 + -0.8 152,642 + -0.6 152,643 - +3.4 152,643 - -1.9 152,643 - -1.9 152,643 - -1.9 152,643 - -1.6 152,643 - -1.1 152,643 - -1.5 152,687 - -0.8 152,712 + -1.2 152,722 + -1.5 152,722 + +0.6 152,723 - -2.7 152,723 - +0.8 152,723 - -1.5 152,728 + +0.2 152,728 + -0.3 152,728 + -1.9 152,728 + -1.4 152,728 + +1.9 152,729 - -1.1 152,729 - -2.3 152,729 - +2.0 152,729 - +1.2 152,730 + -0.5 152,730 + -2.3 152,730 + -2.0 152,731 - +1.1 152,731 - -0.4 152,731 - -1.2 152,846 - -0.7 152,929 + Sama_0136 0.13 +2.7 152,929 + Sama_0136 0.13 -2.1 153,101 - Sama_0136 0.28 -1.3 153,101 - Sama_0136 0.28 +0.8 153,101 - Sama_0136 0.28 -1.9 153,111 + Sama_0136 0.29 -0.8 153,111 + Sama_0136 0.29 +2.0 153,111 + Sama_0136 0.29 -2.5 153,111 + Sama_0136 0.29 -1.2 153,111 + Sama_0136 0.29 -1.4 153,112 - Sama_0136 0.29 +0.4 153,112 - Sama_0136 0.29 -2.6 153,112 - Sama_0136 0.29 -2.4 153,112 - Sama_0136 0.29 -1.2 153,112 - Sama_0136 0.29 +1.8 153,112 - Sama_0136 0.29 +2.1 153,112 - Sama_0136 0.29 -2.2 153,147 + Sama_0136 0.32 +0.5 153,147 + Sama_0136 0.32 +0.8 153,175 + Sama_0136 0.34 +2.1 153,175 + Sama_0136 0.34 +0.0 153,175 + Sama_0136 0.34 +0.1 153,175 + Sama_0136 0.34 +2.8 153,176 - Sama_0136 0.34 +0.1 153,176 - Sama_0136 0.34 +0.8 153,176 - Sama_0136 0.34 -1.8 153,176 - Sama_0136 0.34 -0.1 153,246 - Sama_0136 0.40 -0.4 153,246 - Sama_0136 0.40 +0.3 153,270 + Sama_0136 0.42 -0.7 153,270 + Sama_0136 0.42 -0.6 153,270 + Sama_0136 0.42 +0.5 153,271 - Sama_0136 0.42 +3.8 153,299 + Sama_0136 0.44 -0.1 153,299 + Sama_0136 0.44 +2.5 153,299 + Sama_0136 0.44 -1.0 153,299 + Sama_0136 0.44 +1.6 153,300 - Sama_0136 0.44 +2.4 153,300 - Sama_0136 0.44 +1.4
Or see this region's nucleotide sequence