Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_R0002 and Sama_R0003 are separated by 171 nucleotides Sama_R0003 and Sama_0055 are separated by 148 nucleotides Sama_0055 and Sama_0056 are separated by 15 nucleotides Sama_0056 and Sama_0057 overlap by 26 nucleotides
Sama_R0002: Sama_R0002 - 23S ribosomal RNA (RefSeq), at 57,960 to 60,873
_R0002
Sama_R0003: Sama_R0003 - 5S ribosomal RNA (RefSeq), at 61,045 to 61,160
_R0003
Sama_0055: Sama_0055 - hypothetical protein (RefSeq), at 61,309 to 61,560
_0055
Sama_0056: Sama_0056 - Rrf2 family protein (RefSeq), at 61,576 to 62,031
_0056
Sama_0057: Sama_0057 - protein of unknown function DUF610, YibQ (RefSeq), at 62,006 to 62,758
_0057
Position (kb) 61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 61.224 kb on + strand at 61.224 kb on + strand at 61.253 kb on - strand at 61.253 kb on - strand at 61.253 kb on - strand at 61.253 kb on - strand at 61.291 kb on - strand at 61.291 kb on - strand at 61.341 kb on + strand, within Sama_0055 at 61.353 kb on + strand, within Sama_0055 at 61.354 kb on - strand, within Sama_0055 at 61.354 kb on - strand, within Sama_0055 at 61.354 kb on - strand, within Sama_0055 at 61.354 kb on - strand, within Sama_0055 at 61.387 kb on - strand, within Sama_0055 at 61.437 kb on + strand, within Sama_0055 at 61.437 kb on + strand, within Sama_0055 at 61.438 kb on - strand, within Sama_0055 at 61.479 kb on + strand, within Sama_0055 at 61.480 kb on - strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.496 kb on + strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.497 kb on - strand, within Sama_0055 at 61.531 kb on - strand, within Sama_0055 at 61.533 kb on + strand, within Sama_0055 at 61.533 kb on + strand, within Sama_0055 at 61.533 kb on + strand, within Sama_0055 at 61.533 kb on + strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.534 kb on - strand, within Sama_0055 at 61.564 kb on + strand at 61.564 kb on + strand at 61.564 kb on + strand at 61.565 kb on - strand at 61.565 kb on - strand at 61.573 kb on + strand at 61.574 kb on - strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.621 kb on + strand at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.622 kb on - strand, within Sama_0056 at 61.623 kb on + strand, within Sama_0056 at 61.623 kb on + strand, within Sama_0056 at 61.623 kb on + strand, within Sama_0056 at 61.624 kb on - strand, within Sama_0056 at 61.624 kb on - strand, within Sama_0056 at 61.624 kb on - strand, within Sama_0056 at 61.679 kb on + strand, within Sama_0056 at 61.680 kb on - strand, within Sama_0056 at 61.703 kb on + strand, within Sama_0056 at 61.704 kb on - strand, within Sama_0056 at 61.714 kb on - strand, within Sama_0056 at 61.773 kb on + strand, within Sama_0056 at 61.773 kb on + strand, within Sama_0056 at 61.799 kb on + strand, within Sama_0056 at 61.799 kb on + strand, within Sama_0056 at 61.799 kb on + strand, within Sama_0056 at 61.800 kb on - strand, within Sama_0056 at 61.800 kb on - strand, within Sama_0056 at 61.839 kb on - strand, within Sama_0056 at 61.892 kb on + strand, within Sama_0056 at 61.892 kb on + strand, within Sama_0056 at 61.892 kb on + strand, within Sama_0056 at 61.893 kb on - strand, within Sama_0056 at 61.893 kb on - strand, within Sama_0056 at 61.901 kb on + strand, within Sama_0056 at 61.901 kb on + strand, within Sama_0056 at 61.902 kb on - strand, within Sama_0056 at 61.902 kb on - strand, within Sama_0056 at 61.902 kb on - strand, within Sama_0056 at 61.924 kb on + strand, within Sama_0056 at 61.924 kb on + strand, within Sama_0056 at 61.924 kb on + strand, within Sama_0056 at 61.925 kb on - strand, within Sama_0056 at 61.925 kb on - strand, within Sama_0056 at 61.925 kb on - strand, within Sama_0056 at 61.946 kb on - strand, within Sama_0056 at 61.959 kb on + strand, within Sama_0056 at 61.959 kb on + strand, within Sama_0056 at 61.959 kb on + strand, within Sama_0056 at 61.959 kb on + strand, within Sama_0056 at 61.960 kb on - strand, within Sama_0056 at 61.961 kb on + strand, within Sama_0056 at 61.961 kb on + strand, within Sama_0056 at 61.961 kb on + strand, within Sama_0056 at 61.961 kb on + strand, within Sama_0056 at 61.961 kb on + strand, within Sama_0056 at 61.961 kb on + strand, within Sama_0056 at 61.962 kb on - strand, within Sama_0056 at 61.962 kb on - strand, within Sama_0056 at 61.962 kb on - strand, within Sama_0056 at 61.962 kb on - strand, within Sama_0056 at 61.962 kb on - strand, within Sama_0056 at 62.018 kb on + strand at 62.018 kb on + strand at 62.018 kb on + strand at 62.019 kb on - strand at 62.019 kb on - strand at 62.074 kb on + strand at 62.074 kb on + strand at 62.074 kb on + strand at 62.074 kb on + strand at 62.074 kb on + strand at 62.074 kb on + strand at 62.074 kb on + strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.075 kb on - strand at 62.079 kb on - strand at 62.087 kb on + strand, within Sama_0057 at 62.087 kb on + strand, within Sama_0057 at 62.111 kb on + strand, within Sama_0057 at 62.111 kb on + strand, within Sama_0057 at 62.111 kb on + strand, within Sama_0057 at 62.111 kb on + strand, within Sama_0057 at 62.111 kb on + strand, within Sama_0057 at 62.111 kb on + strand, within Sama_0057 at 62.165 kb on + strand, within Sama_0057 at 62.165 kb on + strand, within Sama_0057 at 62.165 kb on + strand, within Sama_0057 at 62.166 kb on - strand, within Sama_0057 at 62.197 kb on + strand, within Sama_0057 at 62.227 kb on + strand, within Sama_0057 at 62.228 kb on - strand, within Sama_0057 at 62.260 kb on + strand, within Sama_0057 at 62.261 kb on - strand, within Sama_0057 at 62.264 kb on + strand, within Sama_0057 at 62.264 kb on + strand, within Sama_0057 at 62.265 kb on - strand, within Sama_0057 at 62.308 kb on - strand, within Sama_0057 at 62.308 kb on - strand, within Sama_0057 at 62.374 kb on + strand, within Sama_0057 at 62.374 kb on + strand, within Sama_0057 at 62.374 kb on + strand, within Sama_0057 at 62.374 kb on + strand, within Sama_0057 at 62.374 kb on + strand, within Sama_0057 at 62.375 kb on - strand, within Sama_0057 at 62.375 kb on - strand, within Sama_0057 at 62.375 kb on - strand, within Sama_0057 at 62.375 kb on - strand, within Sama_0057 at 62.413 kb on + strand, within Sama_0057 at 62.413 kb on + strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.414 kb on - strand, within Sama_0057 at 62.485 kb on + strand, within Sama_0057 at 62.485 kb on + strand, within Sama_0057 at 62.485 kb on + strand, within Sama_0057 at 62.486 kb on - strand, within Sama_0057 at 62.486 kb on - strand, within Sama_0057 at 62.494 kb on + strand, within Sama_0057
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 61,224 + +0.2 61,224 + -2.1 61,253 - -1.5 61,253 - +0.9 61,253 - +2.2 61,253 - -1.6 61,291 - +0.6 61,291 - -0.2 61,341 + Sama_0055 0.13 +1.7 61,353 + Sama_0055 0.17 -0.2 61,354 - Sama_0055 0.18 -1.8 61,354 - Sama_0055 0.18 +0.6 61,354 - Sama_0055 0.18 +0.8 61,354 - Sama_0055 0.18 +1.8 61,387 - Sama_0055 0.31 -0.3 61,437 + Sama_0055 0.51 -2.1 61,437 + Sama_0055 0.51 -2.2 61,438 - Sama_0055 0.51 -0.2 61,479 + Sama_0055 0.67 -1.6 61,480 - Sama_0055 0.68 +1.2 61,496 + Sama_0055 0.74 -1.5 61,496 + Sama_0055 0.74 -0.9 61,496 + Sama_0055 0.74 -1.0 61,496 + Sama_0055 0.74 +0.2 61,496 + Sama_0055 0.74 -0.9 61,496 + Sama_0055 0.74 +1.8 61,496 + Sama_0055 0.74 -0.4 61,496 + Sama_0055 0.74 -1.4 61,496 + Sama_0055 0.74 +2.8 61,496 + Sama_0055 0.74 -0.4 61,496 + Sama_0055 0.74 -1.6 61,496 + Sama_0055 0.74 -0.2 61,496 + Sama_0055 0.74 -1.4 61,496 + Sama_0055 0.74 +2.8 61,496 + Sama_0055 0.74 +0.8 61,496 + Sama_0055 0.74 +0.5 61,496 + Sama_0055 0.74 +3.3 61,496 + Sama_0055 0.74 -0.6 61,496 + Sama_0055 0.74 -0.1 61,497 - Sama_0055 0.75 -1.6 61,497 - Sama_0055 0.75 -2.1 61,497 - Sama_0055 0.75 +0.8 61,497 - Sama_0055 0.75 +0.5 61,497 - Sama_0055 0.75 +2.9 61,497 - Sama_0055 0.75 +0.7 61,497 - Sama_0055 0.75 -0.8 61,497 - Sama_0055 0.75 +1.9 61,497 - Sama_0055 0.75 +0.6 61,497 - Sama_0055 0.75 +3.5 61,497 - Sama_0055 0.75 -3.2 61,497 - Sama_0055 0.75 +0.9 61,497 - Sama_0055 0.75 +3.3 61,497 - Sama_0055 0.75 +0.0 61,531 - Sama_0055 0.88 +0.5 61,533 + Sama_0055 0.89 +1.2 61,533 + Sama_0055 0.89 +3.4 61,533 + Sama_0055 0.89 -1.8 61,533 + Sama_0055 0.89 +0.3 61,534 - Sama_0055 0.89 -0.2 61,534 - Sama_0055 0.89 +2.4 61,534 - Sama_0055 0.89 +0.2 61,534 - Sama_0055 0.89 +1.1 61,534 - Sama_0055 0.89 +1.4 61,534 - Sama_0055 0.89 +0.6 61,534 - Sama_0055 0.89 +0.0 61,564 + +0.2 61,564 + +1.2 61,564 + +0.8 61,565 - +4.0 61,565 - -0.4 61,573 + -1.4 61,574 - -0.5 61,621 + +1.1 61,621 + -2.0 61,621 + +0.3 61,621 + +0.1 61,621 + +2.2 61,621 + +0.2 61,621 + -0.2 61,621 + -2.3 61,621 + +0.1 61,621 + -0.8 61,621 + -1.3 61,621 + -0.9 61,621 + +2.6 61,621 + -0.7 61,621 + +0.9 61,621 + -2.8 61,621 + +0.0 61,621 + -1.0 61,621 + -1.2 61,621 + -0.9 61,621 + -1.1 61,621 + -0.2 61,621 + +1.7 61,621 + +0.8 61,621 + -0.9 61,621 + +0.6 61,622 - Sama_0056 0.10 +0.2 61,622 - Sama_0056 0.10 +1.3 61,622 - Sama_0056 0.10 -0.9 61,622 - Sama_0056 0.10 -0.9 61,622 - Sama_0056 0.10 -0.5 61,622 - Sama_0056 0.10 +3.3 61,622 - Sama_0056 0.10 +0.0 61,622 - Sama_0056 0.10 +0.7 61,622 - Sama_0056 0.10 +0.4 61,622 - Sama_0056 0.10 +1.1 61,622 - Sama_0056 0.10 +1.0 61,622 - Sama_0056 0.10 -0.4 61,622 - Sama_0056 0.10 +1.5 61,622 - Sama_0056 0.10 +3.0 61,622 - Sama_0056 0.10 +1.1 61,622 - Sama_0056 0.10 -0.1 61,622 - Sama_0056 0.10 -1.0 61,622 - Sama_0056 0.10 -2.3 61,622 - Sama_0056 0.10 +0.2 61,622 - Sama_0056 0.10 -1.4 61,622 - Sama_0056 0.10 +0.2 61,622 - Sama_0056 0.10 -1.5 61,622 - Sama_0056 0.10 -1.3 61,622 - Sama_0056 0.10 -1.6 61,622 - Sama_0056 0.10 -0.5 61,622 - Sama_0056 0.10 -0.5 61,622 - Sama_0056 0.10 -0.4 61,622 - Sama_0056 0.10 -0.3 61,622 - Sama_0056 0.10 -0.3 61,622 - Sama_0056 0.10 -1.0 61,623 + Sama_0056 0.10 +3.1 61,623 + Sama_0056 0.10 +0.1 61,623 + Sama_0056 0.10 -2.4 61,624 - Sama_0056 0.11 +5.7 61,624 - Sama_0056 0.11 +2.2 61,624 - Sama_0056 0.11 -0.2 61,679 + Sama_0056 0.23 +0.7 61,680 - Sama_0056 0.23 +1.2 61,703 + Sama_0056 0.28 +1.9 61,704 - Sama_0056 0.28 +1.5 61,714 - Sama_0056 0.30 -0.8 61,773 + Sama_0056 0.43 +1.3 61,773 + Sama_0056 0.43 -1.4 61,799 + Sama_0056 0.49 -2.3 61,799 + Sama_0056 0.49 -1.2 61,799 + Sama_0056 0.49 +1.6 61,800 - Sama_0056 0.49 +0.8 61,800 - Sama_0056 0.49 -0.9 61,839 - Sama_0056 0.58 -0.2 61,892 + Sama_0056 0.69 -0.5 61,892 + Sama_0056 0.69 -0.7 61,892 + Sama_0056 0.69 +0.2 61,893 - Sama_0056 0.70 +1.2 61,893 - Sama_0056 0.70 -2.1 61,901 + Sama_0056 0.71 +0.0 61,901 + Sama_0056 0.71 +0.8 61,902 - Sama_0056 0.71 +4.1 61,902 - Sama_0056 0.71 -1.6 61,902 - Sama_0056 0.71 -1.4 61,924 + Sama_0056 0.76 +0.2 61,924 + Sama_0056 0.76 -2.0 61,924 + Sama_0056 0.76 -1.9 61,925 - Sama_0056 0.77 +0.0 61,925 - Sama_0056 0.77 -0.6 61,925 - Sama_0056 0.77 -3.0 61,946 - Sama_0056 0.81 -0.6 61,959 + Sama_0056 0.84 +0.8 61,959 + Sama_0056 0.84 -1.8 61,959 + Sama_0056 0.84 +1.5 61,959 + Sama_0056 0.84 +4.5 61,960 - Sama_0056 0.84 -0.2 61,961 + Sama_0056 0.84 +2.0 61,961 + Sama_0056 0.84 -1.0 61,961 + Sama_0056 0.84 -0.5 61,961 + Sama_0056 0.84 +0.2 61,961 + Sama_0056 0.84 +1.5 61,961 + Sama_0056 0.84 +3.9 61,962 - Sama_0056 0.85 -1.4 61,962 - Sama_0056 0.85 +0.8 61,962 - Sama_0056 0.85 +2.2 61,962 - Sama_0056 0.85 -1.8 61,962 - Sama_0056 0.85 +2.1 62,018 + -1.9 62,018 + -1.0 62,018 + +0.2 62,019 - -0.2 62,019 - +0.6 62,074 + +0.1 62,074 + -1.2 62,074 + -0.2 62,074 + +1.3 62,074 + +0.4 62,074 + -0.6 62,074 + -1.0 62,075 - -1.0 62,075 - -1.1 62,075 - +0.7 62,075 - -1.3 62,075 - -0.0 62,075 - -0.4 62,075 - -2.4 62,075 - +1.2 62,079 - +0.1 62,087 + Sama_0057 0.11 -0.9 62,087 + Sama_0057 0.11 +3.9 62,111 + Sama_0057 0.14 -0.2 62,111 + Sama_0057 0.14 +0.6 62,111 + Sama_0057 0.14 -1.2 62,111 + Sama_0057 0.14 -0.6 62,111 + Sama_0057 0.14 +0.5 62,111 + Sama_0057 0.14 -0.3 62,165 + Sama_0057 0.21 +1.6 62,165 + Sama_0057 0.21 -0.7 62,165 + Sama_0057 0.21 +0.5 62,166 - Sama_0057 0.21 -1.9 62,197 + Sama_0057 0.25 +1.2 62,227 + Sama_0057 0.29 -1.1 62,228 - Sama_0057 0.29 -1.2 62,260 + Sama_0057 0.34 -2.3 62,261 - Sama_0057 0.34 -0.5 62,264 + Sama_0057 0.34 -1.1 62,264 + Sama_0057 0.34 -1.3 62,265 - Sama_0057 0.34 -2.3 62,308 - Sama_0057 0.40 +5.8 62,308 - Sama_0057 0.40 +0.6 62,374 + Sama_0057 0.49 +0.3 62,374 + Sama_0057 0.49 +2.3 62,374 + Sama_0057 0.49 +0.4 62,374 + Sama_0057 0.49 +0.4 62,374 + Sama_0057 0.49 +3.8 62,375 - Sama_0057 0.49 -0.2 62,375 - Sama_0057 0.49 +0.2 62,375 - Sama_0057 0.49 +1.8 62,375 - Sama_0057 0.49 +0.5 62,413 + Sama_0057 0.54 +2.8 62,413 + Sama_0057 0.54 +1.4 62,414 - Sama_0057 0.54 +1.6 62,414 - Sama_0057 0.54 +3.1 62,414 - Sama_0057 0.54 +0.1 62,414 - Sama_0057 0.54 -0.8 62,414 - Sama_0057 0.54 +2.0 62,414 - Sama_0057 0.54 +2.3 62,414 - Sama_0057 0.54 -0.6 62,414 - Sama_0057 0.54 -1.1 62,485 + Sama_0057 0.64 +1.2 62,485 + Sama_0057 0.64 -0.9 62,485 + Sama_0057 0.64 -0.8 62,486 - Sama_0057 0.64 -1.0 62,486 - Sama_0057 0.64 +0.8 62,494 + Sama_0057 0.65 -0.6
Or see this region's nucleotide sequence