Strain Fitness in Shewanella amazonensis SB2B around Sama_0043

Experiment: Cisplatin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.01 mg/ml
46,082	+				-1.0
46,083	-				+3.5
46,089	+				+4.6
46,089	+				-1.6
46,089	+				+0.2
46,090	-				-2.4
46,090	-				-2.4
47,068	-				-1.0
47,068	-				+3.4
47,068	-				+1.2
47,068	-				-0.4
47,068	-				-0.2
47,068	-				-1.4
47,068	-				+1.5
47,134	-	def	Sama_0043	0.13	+2.2
47,134	-	def	Sama_0043	0.13	-1.0
47,134	-	def	Sama_0043	0.13	+1.5
47,570	-				-0.5
47,570	-				-1.8
47,574	-				-0.3
47,574	-				+0.0
47,612	+				-1.6
47,613	-				+0.6
47,615	-				-2.1
47,627	-				+1.4
47,627	-				-0.8
47,640	+				-2.0
47,648	-				-0.7
47,657	-				+0.4
47,660	+				+1.5
47,660	+				-0.5
47,661	-				+0.8
47,661	-				+0.0
47,661	-				-1.0
47,666	+				-1.4
47,666	+				-0.4
47,666	+				-0.4
47,666	+				-0.5
47,666	+				+1.4
47,667	-				-1.5
47,667	-				-0.2
47,667	-				+1.9
47,667	-				-1.6
47,667	-				-0.6
47,667	-				-0.4
47,667	-				-0.9
47,667	-				-0.7
47,667	-				+0.5
47,667	-				+1.3
47,667	-				-1.2
47,678	+				+1.1
47,716	+				+1.2
47,716	+				-0.4
47,717	-				-2.0
47,722	+				+1.9
47,722	+				-1.6
47,722	+				+2.4
47,723	-				-0.4
47,731	+				-1.5
47,740	+				+2.8
47,777	+				-1.2
47,778	-				-1.2
47,778	-				+0.1
47,799	+				+0.7
47,799	+				-2.5
47,799	+				+1.0
47,799	+				-0.0
47,799	+				+0.2
47,799	+				+4.2
47,799	+				-1.5
47,799	+				+0.4
47,800	-				-0.9
47,800	-				-0.6
47,800	-				+0.6
47,800	-				+0.1
47,800	-				+0.2
47,800	-				-1.6
47,800	-				-1.6
47,800	-				-0.6
47,800	-				-1.1
47,831	+				+1.1
47,848	+				+2.8
47,987	+		Sama_0044	0.22	+1.1
47,988	-		Sama_0044	0.22	-0.7
47,988	-		Sama_0044	0.22	-2.2
47,988	-		Sama_0044	0.22	+1.8
48,050	+		Sama_0044	0.28	+1.0
48,050	+		Sama_0044	0.28	+1.0
48,050	+		Sama_0044	0.28	-1.4
48,050	+		Sama_0044	0.28	+4.8
48,051	-		Sama_0044	0.28	+0.8
48,051	-		Sama_0044	0.28	+2.1
48,051	-		Sama_0044	0.28	+0.6
48,060	+		Sama_0044	0.29	+2.4
48,061	-		Sama_0044	0.29	-0.4
48,165	+		Sama_0044	0.39	+2.7
48,165	+		Sama_0044	0.39	+3.3
48,165	+		Sama_0044	0.39	+0.7
48,165	+		Sama_0044	0.39	+0.3
48,165	+		Sama_0044	0.39	+1.8
48,165	+		Sama_0044	0.39	-0.1
48,166	-		Sama_0044	0.39	+1.8
48,166	-		Sama_0044	0.39	-0.2
48,166	-		Sama_0044	0.39	-1.5
48,166	-		Sama_0044	0.39	-0.9
48,191	+		Sama_0044	0.42	-0.2
48,191	+		Sama_0044	0.42	-0.2
48,191	+		Sama_0044	0.42	+1.1
48,191	+		Sama_0044	0.42	+1.0
48,192	-		Sama_0044	0.42	-0.5
48,192	-		Sama_0044	0.42	+0.3
48,192	-		Sama_0044	0.42	-1.8
48,192	-		Sama_0044	0.42	+0.4
48,207	+		Sama_0044	0.43	-0.7
48,207	+		Sama_0044	0.43	+0.2
48,207	+		Sama_0044	0.43	-1.4
48,207	+		Sama_0044	0.43	+2.4
48,207	+		Sama_0044	0.43	-0.6
48,207	+		Sama_0044	0.43	-1.0
48,207	+		Sama_0044	0.43	+0.2
48,207	+		Sama_0044	0.43	-0.8
48,208	-		Sama_0044	0.43	-1.8
48,208	-		Sama_0044	0.43	+1.1
48,208	-		Sama_0044	0.43	+0.8
48,208	-		Sama_0044	0.43	+0.0
48,208	-		Sama_0044	0.43	+0.0
48,208	-		Sama_0044	0.43	-1.1
48,208	-		Sama_0044	0.43	+0.7
48,266	+		Sama_0044	0.49	+2.4
48,266	+		Sama_0044	0.49	+4.5
48,353	+		Sama_0044	0.57	+1.5
48,396	+		Sama_0044	0.61	-1.2
48,396	+		Sama_0044	0.61	-1.2
48,396	+		Sama_0044	0.61	-1.4
48,396	+		Sama_0044	0.61	+1.5
48,396	+		Sama_0044	0.61	+1.8
48,396	+		Sama_0044	0.61	+2.0
48,396	+		Sama_0044	0.61	-0.8
48,396	+		Sama_0044	0.61	+0.4
48,396	+		Sama_0044	0.61	-0.5
48,396	+		Sama_0044	0.61	+1.2
48,397	-		Sama_0044	0.61	-1.7
48,397	-		Sama_0044	0.61	-1.0
48,397	-		Sama_0044	0.61	+4.5
48,397	-		Sama_0044	0.61	+2.9
48,397	-		Sama_0044	0.61	-0.6
48,397	-		Sama_0044	0.61	-0.5
48,397	-		Sama_0044	0.61	-0.2
48,397	-		Sama_0044	0.61	+3.0
48,397	-		Sama_0044	0.61	+0.5
48,401	+		Sama_0044	0.62	-0.5
48,402	-		Sama_0044	0.62	-0.3
48,402	-		Sama_0044	0.62	+2.4
48,432	+		Sama_0044	0.65	-0.1
48,432	+		Sama_0044	0.65	-0.4
48,432	+		Sama_0044	0.65	-0.2
48,432	+		Sama_0044	0.65	-1.0
48,432	+		Sama_0044	0.65	-0.0
48,432	+		Sama_0044	0.65	+0.4
48,432	+		Sama_0044	0.65	-0.4
48,433	-		Sama_0044	0.65	+2.8
48,433	-		Sama_0044	0.65	-0.4
48,433	-		Sama_0044	0.65	-0.3
48,433	-		Sama_0044	0.65	-1.8
48,433	-		Sama_0044	0.65	+1.6
48,433	-		Sama_0044	0.65	+4.1
48,433	-		Sama_0044	0.65	-0.2
48,433	-		Sama_0044	0.65	+0.4
48,433	-		Sama_0044	0.65	-1.1
48,433	-		Sama_0044	0.65	+1.8
48,471	-		Sama_0044	0.69	-1.9
48,486	+		Sama_0044	0.70	-0.8
48,486	+		Sama_0044	0.70	+0.6
48,486	+		Sama_0044	0.70	-0.5
48,486	+		Sama_0044	0.70	-2.9
48,486	+		Sama_0044	0.70	-0.4
48,486	+		Sama_0044	0.70	-0.3
48,486	+		Sama_0044	0.70	+2.5
48,486	+		Sama_0044	0.70	-1.4
48,486	+		Sama_0044	0.70	-1.2
48,486	+		Sama_0044	0.70	-0.2
48,486	+		Sama_0044	0.70	-0.2
48,486	+		Sama_0044	0.70	+0.4
48,486	+		Sama_0044	0.70	-0.5
48,486	+		Sama_0044	0.70	+1.7
48,487	-		Sama_0044	0.70	-1.2
48,487	-		Sama_0044	0.70	+0.2
48,487	-		Sama_0044	0.70	+1.7
48,487	-		Sama_0044	0.70	-0.8
48,487	-		Sama_0044	0.70	-1.1
48,487	-		Sama_0044	0.70	-1.3
48,566	+		Sama_0044	0.78	+1.2
48,567	-		Sama_0044	0.78	+3.6
48,567	-		Sama_0044	0.78	-0.1
48,569	+		Sama_0044	0.78	-1.3
48,569	+		Sama_0044	0.78	-0.8