Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00830 and PGA1_c00840 are separated by 307 nucleotides PGA1_c00840 and PGA1_c00850 are separated by 326 nucleotides PGA1_c00850 and PGA1_c00860 are separated by 156 nucleotides
PGA1_c00830: PGA1_c00830 - putative threonine-phosphate decarboxylase CobC, at 81,685 to 82,755
_c00830
PGA1_c00840: PGA1_c00840 - glutathione transferase-like protein, at 83,063 to 84,037
_c00840
PGA1_c00850: PGA1_c00850 - hypothetical protein, at 84,364 to 84,726
_c00850
PGA1_c00860: PGA1_c00860 - cystathionine beta-lyase PatB, at 84,883 to 86,055
_c00860
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1 at 82.647 kb on + strand, within PGA1_c00830 at 82.648 kb on - strand, within PGA1_c00830 at 82.655 kb on - strand at 82.671 kb on + strand at 82.735 kb on + strand at 82.761 kb on + strand at 82.776 kb on + strand at 82.776 kb on + strand at 82.776 kb on + strand at 82.784 kb on - strand at 82.784 kb on - strand at 82.784 kb on - strand at 82.803 kb on - strand at 82.812 kb on + strand at 82.815 kb on - strand at 82.832 kb on + strand at 82.839 kb on + strand at 82.915 kb on + strand at 82.918 kb on - strand at 82.920 kb on + strand at 82.923 kb on - strand at 82.928 kb on + strand at 82.929 kb on + strand at 82.937 kb on - strand at 82.950 kb on - strand at 82.956 kb on - strand at 82.967 kb on + strand at 83.007 kb on + strand at 83.018 kb on + strand at 83.051 kb on - strand at 83.075 kb on + strand at 83.080 kb on + strand at 83.080 kb on + strand at 83.088 kb on - strand at 83.088 kb on - strand at 83.122 kb on - strand at 83.124 kb on + strand at 83.132 kb on - strand at 83.133 kb on - strand at 83.147 kb on - strand at 83.170 kb on - strand, within PGA1_c00840 at 83.173 kb on + strand, within PGA1_c00840 at 83.173 kb on + strand, within PGA1_c00840 at 83.175 kb on - strand, within PGA1_c00840 at 83.179 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.199 kb on - strand, within PGA1_c00840 at 83.211 kb on - strand, within PGA1_c00840 at 83.222 kb on + strand, within PGA1_c00840 at 83.224 kb on - strand, within PGA1_c00840 at 83.224 kb on - strand, within PGA1_c00840 at 83.270 kb on - strand, within PGA1_c00840 at 83.272 kb on - strand, within PGA1_c00840 at 83.286 kb on + strand, within PGA1_c00840 at 83.301 kb on + strand, within PGA1_c00840 at 83.314 kb on - strand, within PGA1_c00840 at 83.343 kb on - strand, within PGA1_c00840 at 83.343 kb on - strand, within PGA1_c00840 at 83.355 kb on - strand, within PGA1_c00840 at 83.382 kb on - strand, within PGA1_c00840 at 83.383 kb on + strand, within PGA1_c00840 at 83.384 kb on + strand, within PGA1_c00840 at 83.392 kb on - strand, within PGA1_c00840 at 83.450 kb on + strand, within PGA1_c00840 at 83.494 kb on - strand, within PGA1_c00840 at 83.496 kb on + strand, within PGA1_c00840 at 83.517 kb on - strand, within PGA1_c00840 at 83.518 kb on + strand, within PGA1_c00840 at 83.533 kb on + strand, within PGA1_c00840 at 83.541 kb on - strand, within PGA1_c00840 at 83.554 kb on + strand, within PGA1_c00840 at 83.562 kb on - strand, within PGA1_c00840 at 83.562 kb on - strand, within PGA1_c00840 at 83.565 kb on + strand, within PGA1_c00840 at 83.565 kb on + strand, within PGA1_c00840 at 83.565 kb on + strand, within PGA1_c00840 at 83.585 kb on - strand, within PGA1_c00840 at 83.589 kb on + strand, within PGA1_c00840 at 83.592 kb on - strand, within PGA1_c00840 at 83.650 kb on + strand, within PGA1_c00840 at 83.658 kb on - strand, within PGA1_c00840 at 83.663 kb on - strand, within PGA1_c00840 at 83.663 kb on - strand, within PGA1_c00840 at 83.675 kb on + strand, within PGA1_c00840 at 83.675 kb on + strand, within PGA1_c00840 at 83.703 kb on - strand, within PGA1_c00840 at 83.708 kb on - strand, within PGA1_c00840 at 83.721 kb on - strand, within PGA1_c00840 at 83.722 kb on - strand, within PGA1_c00840 at 83.747 kb on + strand, within PGA1_c00840 at 83.748 kb on + strand, within PGA1_c00840 at 83.800 kb on - strand, within PGA1_c00840 at 83.834 kb on + strand, within PGA1_c00840 at 83.841 kb on + strand, within PGA1_c00840 at 83.841 kb on + strand, within PGA1_c00840 at 83.842 kb on + strand, within PGA1_c00840 at 83.849 kb on - strand, within PGA1_c00840 at 83.849 kb on - strand, within PGA1_c00840 at 83.855 kb on - strand, within PGA1_c00840 at 83.908 kb on - strand, within PGA1_c00840 at 83.913 kb on + strand, within PGA1_c00840 at 84.044 kb on + strand at 84.046 kb on + strand at 84.052 kb on - strand at 84.052 kb on - strand at 84.054 kb on - strand at 84.054 kb on - strand at 84.064 kb on - strand at 84.076 kb on - strand at 84.084 kb on - strand at 84.084 kb on - strand at 84.088 kb on - strand at 84.105 kb on - strand at 84.139 kb on + strand at 84.146 kb on + strand at 84.146 kb on + strand at 84.146 kb on + strand at 84.154 kb on - strand at 84.161 kb on + strand at 84.185 kb on + strand at 84.190 kb on + strand at 84.194 kb on + strand at 84.202 kb on + strand at 84.202 kb on + strand at 84.220 kb on - strand at 84.263 kb on + strand at 84.274 kb on + strand at 84.279 kb on - strand at 84.279 kb on - strand at 84.282 kb on - strand at 84.282 kb on - strand at 84.282 kb on - strand at 84.325 kb on + strand at 84.366 kb on + strand at 84.401 kb on - strand, within PGA1_c00850 at 84.412 kb on + strand, within PGA1_c00850 at 84.414 kb on + strand, within PGA1_c00850 at 84.414 kb on + strand, within PGA1_c00850 at 84.415 kb on - strand, within PGA1_c00850 at 84.415 kb on - strand, within PGA1_c00850 at 84.422 kb on - strand, within PGA1_c00850 at 84.422 kb on - strand, within PGA1_c00850 at 84.521 kb on + strand, within PGA1_c00850 at 84.540 kb on + strand, within PGA1_c00850 at 84.607 kb on + strand, within PGA1_c00850 at 84.607 kb on + strand, within PGA1_c00850 at 84.677 kb on + strand, within PGA1_c00850 at 84.687 kb on - strand, within PGA1_c00850 at 84.689 kb on + strand, within PGA1_c00850 at 84.689 kb on + strand, within PGA1_c00850 at 84.699 kb on + strand at 84.728 kb on - strand at 84.736 kb on + strand at 84.739 kb on - strand at 84.756 kb on - strand at 84.765 kb on - strand at 84.856 kb on - strand at 84.864 kb on + strand at 84.864 kb on + strand at 84.872 kb on - strand at 84.872 kb on - strand at 84.872 kb on - strand at 84.882 kb on + strand at 84.926 kb on + strand at 84.926 kb on + strand at 84.927 kb on + strand at 84.934 kb on - strand at 84.934 kb on - strand at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 82,647 + PGA1_c00830 0.90 -1.1 82,648 - PGA1_c00830 0.90 +0.6 82,655 - +1.4 82,671 + -1.8 82,735 + -1.0 82,761 + -0.7 82,776 + +0.3 82,776 + +0.8 82,776 + -1.3 82,784 - +0.3 82,784 - +0.2 82,784 - +0.3 82,803 - +0.8 82,812 + -0.3 82,815 - +0.3 82,832 + -0.3 82,839 + -0.6 82,915 + +0.7 82,918 - +0.1 82,920 + +0.5 82,923 - -0.1 82,928 + -0.8 82,929 + -0.6 82,937 - -1.1 82,950 - -1.3 82,956 - -1.0 82,967 + -0.8 83,007 + -0.4 83,018 + -0.3 83,051 - -2.4 83,075 + -0.3 83,080 + -0.1 83,080 + -1.3 83,088 - +1.4 83,088 - -0.3 83,122 - +0.5 83,124 + +1.7 83,132 - +0.1 83,133 - -0.2 83,147 - -0.0 83,170 - PGA1_c00840 0.11 +0.3 83,173 + PGA1_c00840 0.11 +0.1 83,173 + PGA1_c00840 0.11 -0.1 83,175 - PGA1_c00840 0.11 +0.2 83,179 - PGA1_c00840 0.12 -0.3 83,181 - PGA1_c00840 0.12 -0.7 83,181 - PGA1_c00840 0.12 +0.2 83,181 - PGA1_c00840 0.12 -0.8 83,181 - PGA1_c00840 0.12 -0.4 83,199 - PGA1_c00840 0.14 -1.0 83,211 - PGA1_c00840 0.15 -0.4 83,222 + PGA1_c00840 0.16 -1.8 83,224 - PGA1_c00840 0.17 -0.8 83,224 - PGA1_c00840 0.17 +0.4 83,270 - PGA1_c00840 0.21 -0.2 83,272 - PGA1_c00840 0.21 -0.4 83,286 + PGA1_c00840 0.23 +0.6 83,301 + PGA1_c00840 0.24 -0.6 83,314 - PGA1_c00840 0.26 +0.3 83,343 - PGA1_c00840 0.29 +0.3 83,343 - PGA1_c00840 0.29 -0.6 83,355 - PGA1_c00840 0.30 +0.2 83,382 - PGA1_c00840 0.33 -1.9 83,383 + PGA1_c00840 0.33 +0.2 83,384 + PGA1_c00840 0.33 -0.2 83,392 - PGA1_c00840 0.34 -0.0 83,450 + PGA1_c00840 0.40 +1.5 83,494 - PGA1_c00840 0.44 -0.3 83,496 + PGA1_c00840 0.44 -1.3 83,517 - PGA1_c00840 0.47 -1.1 83,518 + PGA1_c00840 0.47 +0.6 83,533 + PGA1_c00840 0.48 -0.1 83,541 - PGA1_c00840 0.49 -0.4 83,554 + PGA1_c00840 0.50 +0.3 83,562 - PGA1_c00840 0.51 +0.4 83,562 - PGA1_c00840 0.51 -0.7 83,565 + PGA1_c00840 0.51 -0.3 83,565 + PGA1_c00840 0.51 -0.6 83,565 + PGA1_c00840 0.51 -0.2 83,585 - PGA1_c00840 0.54 +0.5 83,589 + PGA1_c00840 0.54 -0.2 83,592 - PGA1_c00840 0.54 -0.2 83,650 + PGA1_c00840 0.60 -0.3 83,658 - PGA1_c00840 0.61 -1.8 83,663 - PGA1_c00840 0.62 -0.2 83,663 - PGA1_c00840 0.62 +0.3 83,675 + PGA1_c00840 0.63 +0.3 83,675 + PGA1_c00840 0.63 -0.4 83,703 - PGA1_c00840 0.66 +0.9 83,708 - PGA1_c00840 0.66 -2.5 83,721 - PGA1_c00840 0.67 -0.6 83,722 - PGA1_c00840 0.68 +1.3 83,747 + PGA1_c00840 0.70 -0.9 83,748 + PGA1_c00840 0.70 -0.4 83,800 - PGA1_c00840 0.76 -1.3 83,834 + PGA1_c00840 0.79 -0.3 83,841 + PGA1_c00840 0.80 +0.4 83,841 + PGA1_c00840 0.80 -1.2 83,842 + PGA1_c00840 0.80 +0.4 83,849 - PGA1_c00840 0.81 -0.2 83,849 - PGA1_c00840 0.81 +1.2 83,855 - PGA1_c00840 0.81 -0.4 83,908 - PGA1_c00840 0.87 -0.6 83,913 + PGA1_c00840 0.87 -0.8 84,044 + +1.0 84,046 + -0.7 84,052 - +0.1 84,052 - -0.8 84,054 - -0.0 84,054 - -2.4 84,064 - -0.4 84,076 - +0.2 84,084 - +0.8 84,084 - -0.9 84,088 - -0.8 84,105 - +0.5 84,139 + +1.0 84,146 + +1.6 84,146 + +1.2 84,146 + -0.2 84,154 - +0.5 84,161 + +1.3 84,185 + +0.7 84,190 + -1.7 84,194 + -0.2 84,202 + +0.5 84,202 + -1.1 84,220 - -0.3 84,263 + +0.8 84,274 + -0.0 84,279 - +1.3 84,279 - -0.6 84,282 - -1.5 84,282 - -0.4 84,282 - -0.0 84,325 + -1.0 84,366 + +0.6 84,401 - PGA1_c00850 0.10 +1.1 84,412 + PGA1_c00850 0.13 +0.9 84,414 + PGA1_c00850 0.14 -0.0 84,414 + PGA1_c00850 0.14 -0.5 84,415 - PGA1_c00850 0.14 -2.2 84,415 - PGA1_c00850 0.14 -0.5 84,422 - PGA1_c00850 0.16 -0.2 84,422 - PGA1_c00850 0.16 -0.8 84,521 + PGA1_c00850 0.43 +1.0 84,540 + PGA1_c00850 0.48 -0.5 84,607 + PGA1_c00850 0.67 +0.1 84,607 + PGA1_c00850 0.67 +0.6 84,677 + PGA1_c00850 0.86 -0.5 84,687 - PGA1_c00850 0.89 -0.8 84,689 + PGA1_c00850 0.90 -0.8 84,689 + PGA1_c00850 0.90 -0.5 84,699 + +0.7 84,728 - -0.6 84,736 + -0.1 84,739 - +0.1 84,756 - -0.6 84,765 - -0.7 84,856 - +1.5 84,864 + +0.4 84,864 + -1.3 84,872 - +0.7 84,872 - +0.2 84,872 - -2.3 84,882 + +1.0 84,926 + -0.2 84,926 + +0.0 84,927 + -1.8 84,934 - -0.3 84,934 - -0.7 85,026 + PGA1_c00860 0.12 -0.9 85,026 + PGA1_c00860 0.12 -0.6 85,026 + PGA1_c00860 0.12 -0.1 85,026 + PGA1_c00860 0.12 -0.6 85,034 - PGA1_c00860 0.13 +0.2 85,034 - PGA1_c00860 0.13 +0.2 85,034 - PGA1_c00860 0.13 -0.6 85,034 - PGA1_c00860 0.13 -0.5 85,034 - PGA1_c00860 0.13 +0.4 85,034 - PGA1_c00860 0.13 +0.6 85,034 - PGA1_c00860 0.13 +0.3 85,034 - PGA1_c00860 0.13 +0.1 85,034 - PGA1_c00860 0.13 +0.6 85,034 - PGA1_c00860 0.13 -0.0
Or see this region's nucleotide sequence