Strain Fitness in Marinobacter adhaerens HP15 around HP15_2681

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2680 and HP15_2681 are separated by 68 nucleotidesHP15_2681 and HP15_2682 are separated by 51 nucleotides HP15_2680: HP15_2680 - protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR, at 2,828,261 to 2,829,193 _2680 HP15_2681: HP15_2681 - hypothetical protein, at 2,829,262 to 2,830,077 _2681 HP15_2682: HP15_2682 - TRAP dicarboxylate transporter- DctP subunit, at 2,830,129 to 2,831,094 _2682 Position (kb) 2829 2830 2831Strain fitness (log2 ratio) -2 -1 0 1at 2828.372 kb on - strand, within HP15_2680at 2828.434 kb on - strand, within HP15_2680at 2828.449 kb on - strand, within HP15_2680at 2828.455 kb on + strand, within HP15_2680at 2828.463 kb on - strand, within HP15_2680at 2828.515 kb on - strand, within HP15_2680at 2828.517 kb on - strand, within HP15_2680at 2828.524 kb on - strand, within HP15_2680at 2828.566 kb on + strand, within HP15_2680at 2828.689 kb on - strand, within HP15_2680at 2828.972 kb on + strand, within HP15_2680at 2829.022 kb on + strand, within HP15_2680at 2829.067 kb on + strand, within HP15_2680at 2829.111 kb on + strandat 2829.309 kb on + strandat 2829.485 kb on - strand, within HP15_2681at 2829.485 kb on - strand, within HP15_2681at 2829.592 kb on - strand, within HP15_2681at 2829.597 kb on - strand, within HP15_2681at 2829.623 kb on + strand, within HP15_2681at 2829.631 kb on - strand, within HP15_2681at 2829.631 kb on - strand, within HP15_2681at 2829.663 kb on + strand, within HP15_2681at 2829.748 kb on + strand, within HP15_2681at 2829.794 kb on - strand, within HP15_2681at 2829.926 kb on + strand, within HP15_2681at 2829.951 kb on + strand, within HP15_2681at 2829.959 kb on - strand, within HP15_2681at 2829.959 kb on - strand, within HP15_2681at 2829.971 kb on + strand, within HP15_2681at 2830.024 kb on - strandat 2830.024 kb on - strandat 2830.176 kb on + strandat 2830.184 kb on - strandat 2830.186 kb on - strandat 2830.216 kb on - strandat 2830.296 kb on + strand, within HP15_2682at 2830.522 kb on + strand, within HP15_2682at 2830.533 kb on + strand, within HP15_2682at 2830.533 kb on + strand, within HP15_2682at 2830.533 kb on + strand, within HP15_2682at 2830.533 kb on + strand, within HP15_2682at 2830.533 kb on + strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.541 kb on - strand, within HP15_2682at 2830.543 kb on + strand, within HP15_2682at 2830.558 kb on - strand, within HP15_2682at 2830.564 kb on - strand, within HP15_2682at 2830.574 kb on - strand, within HP15_2682at 2830.597 kb on - strand, within HP15_2682at 2830.656 kb on + strand, within HP15_2682at 2830.759 kb on + strand, within HP15_2682at 2830.800 kb on + strand, within HP15_2682at 2831.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,828,372 - HP15_2680 0.12 -0.6
2,828,434 - HP15_2680 0.19 -0.0
2,828,449 - HP15_2680 0.20 +0.5
2,828,455 + HP15_2680 0.21 -0.3
2,828,463 - HP15_2680 0.22 -0.1
2,828,515 - HP15_2680 0.27 +0.6
2,828,517 - HP15_2680 0.27 -0.4
2,828,524 - HP15_2680 0.28 +0.9
2,828,566 + HP15_2680 0.33 -0.8
2,828,689 - HP15_2680 0.46 -1.0
2,828,972 + HP15_2680 0.76 -0.2
2,829,022 + HP15_2680 0.82 -1.6
2,829,067 + HP15_2680 0.86 -0.5
2,829,111 + -0.2
2,829,309 + +0.5
2,829,485 - HP15_2681 0.27 +0.5
2,829,485 - HP15_2681 0.27 -2.0
2,829,592 - HP15_2681 0.40 -1.0
2,829,597 - HP15_2681 0.41 +0.5
2,829,623 + HP15_2681 0.44 +0.2
2,829,631 - HP15_2681 0.45 -0.7
2,829,631 - HP15_2681 0.45 -0.6
2,829,663 + HP15_2681 0.49 -0.0
2,829,748 + HP15_2681 0.60 -1.2
2,829,794 - HP15_2681 0.65 +0.6
2,829,926 + HP15_2681 0.81 -0.6
2,829,951 + HP15_2681 0.84 -0.2
2,829,959 - HP15_2681 0.85 +0.3
2,829,959 - HP15_2681 0.85 -0.5
2,829,971 + HP15_2681 0.87 -0.5
2,830,024 - -0.2
2,830,024 - -0.4
2,830,176 + +0.6
2,830,184 - -0.0
2,830,186 - +0.8
2,830,216 - -0.3
2,830,296 + HP15_2682 0.17 +0.3
2,830,522 + HP15_2682 0.41 -0.1
2,830,533 + HP15_2682 0.42 +0.3
2,830,533 + HP15_2682 0.42 -1.2
2,830,533 + HP15_2682 0.42 +0.0
2,830,533 + HP15_2682 0.42 -0.1
2,830,533 + HP15_2682 0.42 -0.5
2,830,541 - HP15_2682 0.43 -0.6
2,830,541 - HP15_2682 0.43 +0.5
2,830,541 - HP15_2682 0.43 +0.3
2,830,541 - HP15_2682 0.43 +0.7
2,830,541 - HP15_2682 0.43 +0.2
2,830,541 - HP15_2682 0.43 -0.0
2,830,541 - HP15_2682 0.43 -0.2
2,830,541 - HP15_2682 0.43 +0.8
2,830,541 - HP15_2682 0.43 -0.1
2,830,543 + HP15_2682 0.43 +0.0
2,830,558 - HP15_2682 0.44 -0.8
2,830,564 - HP15_2682 0.45 +0.7
2,830,574 - HP15_2682 0.46 -0.4
2,830,597 - HP15_2682 0.48 +0.2
2,830,656 + HP15_2682 0.55 +0.5
2,830,759 + HP15_2682 0.65 +0.8
2,830,800 + HP15_2682 0.69 -1.1
2,831,069 + -0.7

Or see this region's nucleotide sequence