Strain Fitness in Marinobacter adhaerens HP15 around HP15_2259

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2257 and HP15_2258 are separated by 29 nucleotidesHP15_2258 and HP15_2259 overlap by 26 nucleotidesHP15_2259 and HP15_2260 overlap by 4 nucleotides HP15_2257: HP15_2257 - transcription-repair-coupling factor, at 2,376,426 to 2,379,959 _2257 HP15_2258: HP15_2258 - 5'-methylthioadenosine phosphorylase, at 2,379,989 to 2,380,816 _2258 HP15_2259: HP15_2259 - methylthioadenosine phosphorylase, at 2,380,791 to 2,381,579 _2259 HP15_2260: HP15_2260 - small-conductance mechanosensitive channel, at 2,381,576 to 2,382,799 _2260 Position (kb) 2380 2381 2382Strain fitness (log2 ratio) -2 -1 0 1at 2379.800 kb on + strandat 2379.825 kb on + strandat 2379.833 kb on - strandat 2379.923 kb on + strandat 2380.798 kb on + strandat 2380.820 kb on + strandat 2380.828 kb on - strandat 2381.018 kb on + strand, within HP15_2259at 2381.086 kb on - strand, within HP15_2259at 2381.194 kb on - strand, within HP15_2259at 2381.218 kb on + strand, within HP15_2259at 2381.233 kb on + strand, within HP15_2259at 2381.273 kb on - strand, within HP15_2259at 2381.307 kb on + strand, within HP15_2259at 2381.347 kb on + strand, within HP15_2259at 2381.521 kb on - strandat 2381.523 kb on + strandat 2381.523 kb on + strandat 2381.536 kb on - strandat 2381.536 kb on - strandat 2381.701 kb on + strand, within HP15_2260at 2381.759 kb on - strand, within HP15_2260at 2381.824 kb on + strand, within HP15_2260at 2381.926 kb on + strand, within HP15_2260at 2382.032 kb on - strand, within HP15_2260at 2382.157 kb on + strand, within HP15_2260at 2382.298 kb on + strand, within HP15_2260at 2382.318 kb on - strand, within HP15_2260at 2382.327 kb on + strand, within HP15_2260at 2382.385 kb on - strand, within HP15_2260at 2382.451 kb on - strand, within HP15_2260at 2382.453 kb on + strand, within HP15_2260at 2382.461 kb on - strand, within HP15_2260at 2382.471 kb on - strand, within HP15_2260at 2382.490 kb on - strand, within HP15_2260at 2382.536 kb on + strand, within HP15_2260at 2382.546 kb on + strand, within HP15_2260at 2382.555 kb on + strand, within HP15_2260

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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2,379,800 + -1.0
2,379,825 + +0.6
2,379,833 - +0.6
2,379,923 + -1.1
2,380,798 + -0.8
2,380,820 + -0.1
2,380,828 - -0.5
2,381,018 + HP15_2259 0.29 +0.0
2,381,086 - HP15_2259 0.37 +0.1
2,381,194 - HP15_2259 0.51 -0.7
2,381,218 + HP15_2259 0.54 -2.1
2,381,233 + HP15_2259 0.56 -0.5
2,381,273 - HP15_2259 0.61 -0.8
2,381,307 + HP15_2259 0.65 -0.4
2,381,347 + HP15_2259 0.70 -0.8
2,381,521 - +0.2
2,381,523 + +0.2
2,381,523 + -0.8
2,381,536 - -0.3
2,381,536 - -0.7
2,381,701 + HP15_2260 0.10 -1.1
2,381,759 - HP15_2260 0.15 +0.3
2,381,824 + HP15_2260 0.20 -0.4
2,381,926 + HP15_2260 0.29 -0.3
2,382,032 - HP15_2260 0.37 -1.0
2,382,157 + HP15_2260 0.47 -0.8
2,382,298 + HP15_2260 0.59 -0.7
2,382,318 - HP15_2260 0.61 -0.6
2,382,327 + HP15_2260 0.61 -0.6
2,382,385 - HP15_2260 0.66 -0.4
2,382,451 - HP15_2260 0.71 -0.3
2,382,453 + HP15_2260 0.72 -0.3
2,382,461 - HP15_2260 0.72 +0.5
2,382,471 - HP15_2260 0.73 -0.0
2,382,490 - HP15_2260 0.75 +0.3
2,382,536 + HP15_2260 0.78 -0.0
2,382,546 + HP15_2260 0.79 -0.3
2,382,555 + HP15_2260 0.80 -1.0

Or see this region's nucleotide sequence