Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2257 and HP15_2258 are separated by 29 nucleotides HP15_2258 and HP15_2259 overlap by 26 nucleotides HP15_2259 and HP15_2260 overlap by 4 nucleotides
HP15_2257: HP15_2257 - transcription-repair-coupling factor, at 2,376,426 to 2,379,959
_2257
HP15_2258: HP15_2258 - 5'-methylthioadenosine phosphorylase, at 2,379,989 to 2,380,816
_2258
HP15_2259: HP15_2259 - methylthioadenosine phosphorylase, at 2,380,791 to 2,381,579
_2259
HP15_2260: HP15_2260 - small-conductance mechanosensitive channel, at 2,381,576 to 2,382,799
_2260
Position (kb)
2380
2381
2382 Strain fitness (log2 ratio)
-2
-1
0
1 at 2379.800 kb on + strand at 2379.825 kb on + strand at 2379.833 kb on - strand at 2379.923 kb on + strand at 2380.798 kb on + strand at 2380.820 kb on + strand at 2380.828 kb on - strand at 2381.018 kb on + strand, within HP15_2259 at 2381.086 kb on - strand, within HP15_2259 at 2381.194 kb on - strand, within HP15_2259 at 2381.218 kb on + strand, within HP15_2259 at 2381.233 kb on + strand, within HP15_2259 at 2381.273 kb on - strand, within HP15_2259 at 2381.307 kb on + strand, within HP15_2259 at 2381.347 kb on + strand, within HP15_2259 at 2381.521 kb on - strand at 2381.523 kb on + strand at 2381.523 kb on + strand at 2381.536 kb on - strand at 2381.536 kb on - strand at 2381.701 kb on + strand, within HP15_2260 at 2381.759 kb on - strand, within HP15_2260 at 2381.824 kb on + strand, within HP15_2260 at 2381.926 kb on + strand, within HP15_2260 at 2382.032 kb on - strand, within HP15_2260 at 2382.157 kb on + strand, within HP15_2260 at 2382.298 kb on + strand, within HP15_2260 at 2382.318 kb on - strand, within HP15_2260 at 2382.327 kb on + strand, within HP15_2260 at 2382.385 kb on - strand, within HP15_2260 at 2382.451 kb on - strand, within HP15_2260 at 2382.453 kb on + strand, within HP15_2260 at 2382.461 kb on - strand, within HP15_2260 at 2382.471 kb on - strand, within HP15_2260 at 2382.490 kb on - strand, within HP15_2260 at 2382.536 kb on + strand, within HP15_2260 at 2382.546 kb on + strand, within HP15_2260 at 2382.555 kb on + strand, within HP15_2260
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 2,379,800 + -1.0 2,379,825 + +0.6 2,379,833 - +0.6 2,379,923 + -1.1 2,380,798 + -0.8 2,380,820 + -0.1 2,380,828 - -0.5 2,381,018 + HP15_2259 0.29 +0.0 2,381,086 - HP15_2259 0.37 +0.1 2,381,194 - HP15_2259 0.51 -0.7 2,381,218 + HP15_2259 0.54 -2.1 2,381,233 + HP15_2259 0.56 -0.5 2,381,273 - HP15_2259 0.61 -0.8 2,381,307 + HP15_2259 0.65 -0.4 2,381,347 + HP15_2259 0.70 -0.8 2,381,521 - +0.2 2,381,523 + +0.2 2,381,523 + -0.8 2,381,536 - -0.3 2,381,536 - -0.7 2,381,701 + HP15_2260 0.10 -1.1 2,381,759 - HP15_2260 0.15 +0.3 2,381,824 + HP15_2260 0.20 -0.4 2,381,926 + HP15_2260 0.29 -0.3 2,382,032 - HP15_2260 0.37 -1.0 2,382,157 + HP15_2260 0.47 -0.8 2,382,298 + HP15_2260 0.59 -0.7 2,382,318 - HP15_2260 0.61 -0.6 2,382,327 + HP15_2260 0.61 -0.6 2,382,385 - HP15_2260 0.66 -0.4 2,382,451 - HP15_2260 0.71 -0.3 2,382,453 + HP15_2260 0.72 -0.3 2,382,461 - HP15_2260 0.72 +0.5 2,382,471 - HP15_2260 0.73 -0.0 2,382,490 - HP15_2260 0.75 +0.3 2,382,536 + HP15_2260 0.78 -0.0 2,382,546 + HP15_2260 0.79 -0.3 2,382,555 + HP15_2260 0.80 -1.0
Or see this region's nucleotide sequence