Strain Fitness in Marinobacter adhaerens HP15 around HP15_1829

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1827 and HP15_1828 overlap by 20 nucleotidesHP15_1828 and HP15_1829 overlap by 4 nucleotidesHP15_1829 and HP15_1830 are separated by 107 nucleotides HP15_1827: HP15_1827 - tryptophan synthase, beta subunit, at 1,923,987 to 1,925,207 _1827 HP15_1828: HP15_1828 - phosphoribosylanthranilate isomerase, at 1,925,188 to 1,925,817 _1828 HP15_1829: HP15_1829 - tRNA pseudouridine synthase A, at 1,925,814 to 1,926,722 _1829 HP15_1830: HP15_1830 - secreted protein containing motility protein FimV, at 1,926,830 to 1,930,078 _1830 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -2 -1 0 1at 1925.326 kb on - strand, within HP15_1828at 1925.350 kb on - strand, within HP15_1828at 1925.488 kb on - strand, within HP15_1828at 1925.760 kb on - strandat 1925.929 kb on - strand, within HP15_1829at 1926.345 kb on - strand, within HP15_1829at 1926.435 kb on + strand, within HP15_1829at 1926.537 kb on + strand, within HP15_1829at 1926.563 kb on - strand, within HP15_1829at 1926.850 kb on + strandat 1926.857 kb on + strandat 1926.864 kb on + strandat 1926.918 kb on + strandat 1927.182 kb on + strand, within HP15_1830at 1927.215 kb on - strand, within HP15_1830at 1927.242 kb on + strand, within HP15_1830at 1927.333 kb on + strand, within HP15_1830at 1927.341 kb on - strand, within HP15_1830at 1927.483 kb on + strand, within HP15_1830

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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1,925,326 - HP15_1828 0.22 -1.3
1,925,350 - HP15_1828 0.26 -2.3
1,925,488 - HP15_1828 0.48 -2.7
1,925,760 - -2.6
1,925,929 - HP15_1829 0.13 +0.4
1,926,345 - HP15_1829 0.58 +1.4
1,926,435 + HP15_1829 0.68 +1.1
1,926,537 + HP15_1829 0.80 +0.5
1,926,563 - HP15_1829 0.82 +0.2
1,926,850 + -0.6
1,926,857 + +0.5
1,926,864 + -0.7
1,926,918 + -1.0
1,927,182 + HP15_1830 0.11 -0.6
1,927,215 - HP15_1830 0.12 +0.9
1,927,242 + HP15_1830 0.13 +0.5
1,927,333 + HP15_1830 0.15 +0.5
1,927,341 - HP15_1830 0.16 -0.1
1,927,483 + HP15_1830 0.20 -0.8

Or see this region's nucleotide sequence