Experiment: L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1104 and HP15_1105 are separated by 564 nucleotides HP15_1105 and HP15_1106 are separated by 458 nucleotides
HP15_1104: HP15_1104 - transposase, IS4 family protein-like protein, at 1,131,037 to 1,131,600
_1104
HP15_1105: HP15_1105 - hypothetical protein, at 1,132,165 to 1,132,290
_1105
HP15_1106: HP15_1106 - Rieske (2Fe-2S) domain protein, at 1,132,749 to 1,133,993
_1106
Position (kb)
1132
1133 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1131.180 kb on + strand, within HP15_1104 at 1131.298 kb on + strand, within HP15_1104 at 1131.342 kb on - strand, within HP15_1104 at 1131.346 kb on + strand, within HP15_1104 at 1131.384 kb on + strand, within HP15_1104 at 1131.427 kb on + strand, within HP15_1104 at 1131.505 kb on - strand, within HP15_1104 at 1131.630 kb on + strand at 1131.640 kb on + strand at 1131.682 kb on - strand at 1131.721 kb on + strand at 1131.741 kb on + strand at 1131.741 kb on + strand at 1131.765 kb on + strand at 1131.774 kb on - strand at 1131.786 kb on - strand at 1131.801 kb on - strand at 1131.814 kb on + strand at 1131.820 kb on - strand at 1131.873 kb on + strand at 1131.952 kb on - strand at 1131.987 kb on + strand at 1132.044 kb on - strand at 1132.080 kb on + strand at 1132.082 kb on + strand at 1132.088 kb on - strand at 1132.090 kb on - strand at 1132.220 kb on + strand, within HP15_1105 at 1132.230 kb on + strand, within HP15_1105 at 1132.283 kb on + strand at 1132.293 kb on + strand at 1132.310 kb on + strand at 1132.321 kb on - strand at 1132.370 kb on - strand at 1132.955 kb on + strand, within HP15_1106 at 1133.092 kb on - strand, within HP15_1106 at 1133.094 kb on + strand, within HP15_1106
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lactate (C) remove 1,131,180 + HP15_1104 0.25 +0.4 1,131,298 + HP15_1104 0.46 -0.2 1,131,342 - HP15_1104 0.54 +0.5 1,131,346 + HP15_1104 0.55 +0.6 1,131,384 + HP15_1104 0.62 -0.4 1,131,427 + HP15_1104 0.69 +0.8 1,131,505 - HP15_1104 0.83 +0.5 1,131,630 + +0.5 1,131,640 + +0.7 1,131,682 - +0.5 1,131,721 + -0.2 1,131,741 + -0.5 1,131,741 + +0.4 1,131,765 + +0.5 1,131,774 - +0.5 1,131,786 - -0.1 1,131,801 - +1.1 1,131,814 + +0.1 1,131,820 - -1.8 1,131,873 + -0.5 1,131,952 - +1.1 1,131,987 + +0.1 1,132,044 - +0.9 1,132,080 + -0.5 1,132,082 + -1.0 1,132,088 - +0.2 1,132,090 - -0.2 1,132,220 + HP15_1105 0.44 -0.2 1,132,230 + HP15_1105 0.52 +2.2 1,132,283 + -0.4 1,132,293 + -0.4 1,132,310 + +0.5 1,132,321 - +0.5 1,132,370 - -0.0 1,132,955 + HP15_1106 0.17 -0.5 1,133,092 - HP15_1106 0.28 +0.2 1,133,094 + HP15_1106 0.28 -0.2
Or see this region's nucleotide sequence