Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3084 and Sama_3085 overlap by 4 nucleotides Sama_3085 and Sama_3086 overlap by 14 nucleotides Sama_3086 and Sama_3087 overlap by 4 nucleotides Sama_3087 and Sama_3088 are separated by 111 nucleotides
Sama_3084: Sama_3084 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq), at 3,661,024 to 3,661,572
_3084
Sama_3085: Sama_3085 - hypothetical protein (RefSeq), at 3,661,569 to 3,662,126
_3085
Sama_3086: Sama_3086 - OstA-like protein (RefSeq), at 3,662,113 to 3,662,667
_3086
Sama_3087: Sama_3087 - ABC transporter, ATP-binding protein (RefSeq), at 3,662,664 to 3,663,395
_3087
Sama_3088: Sama_3088 - RNA polymerase factor sigma-54 (RefSeq), at 3,663,507 to 3,664,988
_3088
Position (kb)
3662
3663 Strain fitness (log2 ratio)
-1
0
1 at 3663.393 kb on + strand at 3663.393 kb on + strand at 3663.393 kb on + strand at 3663.394 kb on - strand at 3663.394 kb on - strand at 3663.397 kb on + strand at 3663.397 kb on + strand at 3663.397 kb on + strand at 3663.397 kb on + strand at 3663.398 kb on - strand at 3663.398 kb on - strand at 3663.398 kb on - strand at 3663.398 kb on - strand at 3663.401 kb on + strand at 3663.401 kb on + strand at 3663.441 kb on - strand at 3663.441 kb on - strand at 3663.460 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 3,663,393 + +0.3 3,663,393 + +0.0 3,663,393 + +1.2 3,663,394 - +0.6 3,663,394 - -0.6 3,663,397 + +0.4 3,663,397 + +0.3 3,663,397 + -0.9 3,663,397 + +1.1 3,663,398 - +0.3 3,663,398 - +0.6 3,663,398 - +0.5 3,663,398 - -0.1 3,663,401 + -0.8 3,663,401 + +0.8 3,663,441 - +0.4 3,663,441 - +1.4 3,663,460 + -0.1
Or see this region's nucleotide sequence