Experiment: Cisplatin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_2592 and Sama_2593 are separated by 115 nucleotides Sama_2593 and lipB are separated by 94 nucleotides lipB and Sama_2595 are separated by 1 nucleotides
Sama_2592: Sama_2592 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 3,100,253 to 3,101,431
_2592
Sama_2593: Sama_2593 - hypothetical protein (RefSeq), at 3,101,547 to 3,101,813
_2593
Sama_2594: lipB - lipoyltransferase (RefSeq), at 3,101,908 to 3,102,558
lipB
Sama_2595: Sama_2595 - lipoyl synthase (RefSeq), at 3,102,560 to 3,103,525
_2595
Position (kb)
3101
3102
3103 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3101.430 kb on - strand at 3101.430 kb on - strand at 3101.510 kb on + strand at 3101.811 kb on + strand at 3101.811 kb on + strand at 3101.811 kb on + strand at 3101.811 kb on + strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.812 kb on - strand at 3101.815 kb on + strand at 3101.816 kb on - strand at 3101.832 kb on + strand at 3101.832 kb on + strand at 3101.832 kb on + strand at 3101.870 kb on + strand at 3101.870 kb on + strand at 3102.548 kb on + strand at 3103.523 kb on + strand at 3103.523 kb on + strand at 3103.523 kb on + strand at 3103.524 kb on - strand at 3103.524 kb on - strand at 3103.533 kb on + strand at 3103.533 kb on + strand at 3103.533 kb on + strand at 3103.534 kb on - strand at 3103.534 kb on - strand at 3103.539 kb on + strand at 3103.539 kb on + strand at 3103.539 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.005 mg/ml remove 3,101,430 - +0.1 3,101,430 - -0.1 3,101,510 + +2.2 3,101,811 + +0.9 3,101,811 + +1.5 3,101,811 + -0.6 3,101,811 + +0.9 3,101,812 - +1.0 3,101,812 - +1.1 3,101,812 - +0.2 3,101,812 - +1.0 3,101,812 - +1.0 3,101,815 + +0.1 3,101,816 - +3.5 3,101,832 + +0.4 3,101,832 + +0.7 3,101,832 + -1.2 3,101,870 + +0.9 3,101,870 + +0.7 3,102,548 + +0.2 3,103,523 + +0.4 3,103,523 + -0.4 3,103,523 + +0.8 3,103,524 - -0.1 3,103,524 - -0.1 3,103,533 + -1.7 3,103,533 + +0.4 3,103,533 + +1.3 3,103,534 - +0.6 3,103,534 - +0.3 3,103,539 + -1.5 3,103,539 + -2.3 3,103,539 + +0.8
Or see this region's nucleotide sequence