Strain Fitness in Shewanella amazonensis SB2B around Sama_2420

Experiment: Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.005 mg/ml
2,912,125	-		Sama_2419	0.29	-0.6
2,912,196	+		Sama_2419	0.34	-0.5
2,912,197	-		Sama_2419	0.34	-0.1
2,912,197	-		Sama_2419	0.34	+0.6
2,912,197	-		Sama_2419	0.34	+1.0
2,912,197	-		Sama_2419	0.34	+1.1
2,912,213	-		Sama_2419	0.35	+0.4
2,912,218	+		Sama_2419	0.36	-1.0
2,912,236	+		Sama_2419	0.37	-0.2
2,912,263	-		Sama_2419	0.39	-0.6
2,912,337	+		Sama_2419	0.45	-0.9
2,912,337	+		Sama_2419	0.45	+0.2
2,912,337	+		Sama_2419	0.45	+0.2
2,912,337	+		Sama_2419	0.45	-1.9
2,912,338	-		Sama_2419	0.45	-0.2
2,912,338	-		Sama_2419	0.45	+0.1
2,912,338	-		Sama_2419	0.45	+0.5
2,912,338	-		Sama_2419	0.45	-1.8
2,912,353	+		Sama_2419	0.46	-1.1
2,912,354	-		Sama_2419	0.46	+1.7
2,912,354	-		Sama_2419	0.46	-1.0
2,912,354	-		Sama_2419	0.46	-0.7
2,912,354	-		Sama_2419	0.46	+0.0
2,912,354	-		Sama_2419	0.46	+0.2
2,912,354	-		Sama_2419	0.46	+0.4
2,912,376	+		Sama_2419	0.47	+0.6
2,912,379	+		Sama_2419	0.48	+0.6
2,912,423	+		Sama_2419	0.51	+0.0
2,912,424	-		Sama_2419	0.51	-2.0
2,912,477	+		Sama_2419	0.55	+0.8
2,912,478	-		Sama_2419	0.55	-1.5
2,912,521	+		Sama_2419	0.58	-0.5
2,912,521	+		Sama_2419	0.58	-0.8
2,912,522	-		Sama_2419	0.58	-0.5
2,912,522	-		Sama_2419	0.58	-0.5
2,912,522	-		Sama_2419	0.58	+0.3
2,912,522	-		Sama_2419	0.58	-2.2
2,912,522	-		Sama_2419	0.58	+0.8
2,912,525	+		Sama_2419	0.58	-1.4
2,912,533	-		Sama_2419	0.59	+0.6
2,912,533	-		Sama_2419	0.59	+0.7
2,912,534	+		Sama_2419	0.59	+0.2
2,912,535	-		Sama_2419	0.59	+0.4
2,912,561	+		Sama_2419	0.61	-0.2
2,912,561	+		Sama_2419	0.61	-1.3
2,912,561	+		Sama_2419	0.61	-1.8
2,912,561	+		Sama_2419	0.61	+0.0
2,912,562	-		Sama_2419	0.61	-0.8
2,912,562	-		Sama_2419	0.61	-0.5
2,912,562	-		Sama_2419	0.61	+1.8
2,912,562	-		Sama_2419	0.61	-2.5
2,912,576	+		Sama_2419	0.62	-0.8
2,912,577	-		Sama_2419	0.62	+1.1
2,912,606	-		Sama_2419	0.64	-2.8
2,912,606	-		Sama_2419	0.64	+0.8
2,912,606	-		Sama_2419	0.64	+2.5
2,912,606	-		Sama_2419	0.64	+0.2
2,912,661	+		Sama_2419	0.69	-0.1
2,912,662	-		Sama_2419	0.69	-0.4
2,912,662	-		Sama_2419	0.69	+1.5
2,912,662	-		Sama_2419	0.69	-1.4
2,912,662	-		Sama_2419	0.69	+0.5
2,912,665	+		Sama_2419	0.69	-1.7
2,912,784	+		Sama_2419	0.78	-2.2
2,912,863	-		Sama_2419	0.83	+0.5
2,912,863	-		Sama_2419	0.83	-1.9
2,912,863	-		Sama_2419	0.83	-2.0
2,913,058	+				-1.5
2,913,077	+				+0.5
2,913,103	+				-0.5
2,913,103	+				-0.8
2,913,103	+				-0.5
2,913,103	+				+0.2
2,913,104	-				+0.6
2,913,104	-				+0.8
2,913,104	-				+0.0
2,913,104	-				-1.2
2,913,104	-				+0.8
2,913,113	-				-1.0
2,913,171	+	xni	Sama_2420	0.11	-0.5
2,913,171	+	xni	Sama_2420	0.11	+1.2
2,913,172	-	xni	Sama_2420	0.12	-0.9
2,913,172	-	xni	Sama_2420	0.12	+0.8
2,913,203	-	xni	Sama_2420	0.16	+0.0
2,913,276	+	xni	Sama_2420	0.25	+0.2
2,913,287	+	xni	Sama_2420	0.27	-1.9
2,913,288	-	xni	Sama_2420	0.27	+0.0
2,913,367	+	xni	Sama_2420	0.37	+0.6
2,913,368	-	xni	Sama_2420	0.37	+0.8
2,913,368	-	xni	Sama_2420	0.37	-0.2
2,913,368	-	xni	Sama_2420	0.37	+0.4
2,913,401	+	xni	Sama_2420	0.42	+0.2
2,913,402	-	xni	Sama_2420	0.42	-2.0
2,913,402	-	xni	Sama_2420	0.42	+0.4
2,913,406	+	xni	Sama_2420	0.42	-0.3
2,913,406	+	xni	Sama_2420	0.42	+1.4
2,913,406	+	xni	Sama_2420	0.42	-0.8
2,913,406	+	xni	Sama_2420	0.42	-0.5
2,913,406	+	xni	Sama_2420	0.42	+1.7
2,913,406	+	xni	Sama_2420	0.42	+0.0
2,913,406	+	xni	Sama_2420	0.42	-0.1
2,913,406	+	xni	Sama_2420	0.42	+2.0
2,913,407	-	xni	Sama_2420	0.42	+0.5
2,913,407	-	xni	Sama_2420	0.42	-0.8
2,913,407	-	xni	Sama_2420	0.42	+0.6
2,913,407	-	xni	Sama_2420	0.42	+0.5
2,913,407	-	xni	Sama_2420	0.42	+0.8
2,913,411	-	xni	Sama_2420	0.43	+0.2
2,913,411	-	xni	Sama_2420	0.43	-1.5
2,913,411	-	xni	Sama_2420	0.43	+1.2
2,913,453	-	xni	Sama_2420	0.48	-0.6
2,913,461	+	xni	Sama_2420	0.49	-0.2
2,913,497	+	xni	Sama_2420	0.54	-1.7
2,913,498	-	xni	Sama_2420	0.54	-1.2
2,913,498	-	xni	Sama_2420	0.54	+0.3
2,913,559	+	xni	Sama_2420	0.62	-1.0
2,913,559	+	xni	Sama_2420	0.62	+0.7
2,913,559	+	xni	Sama_2420	0.62	+0.0
2,913,559	+	xni	Sama_2420	0.62	-0.4
2,913,560	-	xni	Sama_2420	0.62	+0.1
2,913,560	-	xni	Sama_2420	0.62	-0.5
2,913,560	-	xni	Sama_2420	0.62	+0.4
2,913,564	-	xni	Sama_2420	0.63	+0.3
2,913,564	-	xni	Sama_2420	0.63	-0.3
2,913,588	+	xni	Sama_2420	0.66	+0.1
2,913,588	+	xni	Sama_2420	0.66	+0.0
2,913,589	-	xni	Sama_2420	0.66	+0.8
2,913,589	-	xni	Sama_2420	0.66	-0.8
2,913,589	-	xni	Sama_2420	0.66	-0.0
2,913,589	-	xni	Sama_2420	0.66	-0.2
2,913,589	-	xni	Sama_2420	0.66	+0.8
2,913,589	-	xni	Sama_2420	0.66	+0.1
2,913,589	-	xni	Sama_2420	0.66	+0.1
2,913,640	+	xni	Sama_2420	0.73	-1.4
2,913,640	+	xni	Sama_2420	0.73	+0.4
2,913,641	-	xni	Sama_2420	0.73	+1.0
2,913,641	-	xni	Sama_2420	0.73	+0.2
2,913,641	-	xni	Sama_2420	0.73	+0.8
2,913,676	-	xni	Sama_2420	0.78	-1.8
2,913,697	-	xni	Sama_2420	0.80	-1.0
2,913,771	+				+1.0
2,913,771	+				+0.6
2,913,772	-				+0.8
2,913,772	-				+0.2
2,913,894	+				+1.0
2,913,894	+				-1.1
2,913,925	+				+0.5
2,913,926	-				-0.6
2,913,951	-				-2.4
2,914,003	+				+1.2
2,914,029	+				+0.8
2,914,038	+				-0.2
2,914,039	-				-1.4
2,914,039	-				+1.5
2,914,050	+		Sama_2421	0.12	-0.7
2,914,077	+		Sama_2421	0.19	-0.5
2,914,102	+		Sama_2421	0.25	-0.3
2,914,103	-		Sama_2421	0.25	-1.3
2,914,125	+		Sama_2421	0.31	-0.3
2,914,125	+		Sama_2421	0.31	-0.5
2,914,126	-		Sama_2421	0.31	+0.2
2,914,126	-		Sama_2421	0.31	-0.5
2,914,126	-		Sama_2421	0.31	-0.3
2,914,127	+		Sama_2421	0.32	-0.2
2,914,127	+		Sama_2421	0.32	+0.1
2,914,127	+		Sama_2421	0.32	+0.2
2,914,127	+		Sama_2421	0.32	-0.8
2,914,127	+		Sama_2421	0.32	-1.2
2,914,127	+		Sama_2421	0.32	+0.6
2,914,127	+		Sama_2421	0.32	+1.8
2,914,127	+		Sama_2421	0.32	-0.5
2,914,127	+		Sama_2421	0.32	+0.6
2,914,127	+		Sama_2421	0.32	-1.1
2,914,127	+		Sama_2421	0.32	+0.4
2,914,127	+		Sama_2421	0.32	-0.8
2,914,127	+		Sama_2421	0.32	+0.2
2,914,128	-		Sama_2421	0.32	-0.9
2,914,128	-		Sama_2421	0.32	-2.9
2,914,128	-		Sama_2421	0.32	-0.8
2,914,128	-		Sama_2421	0.32	-1.6
2,914,128	-		Sama_2421	0.32	-0.2
2,914,128	-		Sama_2421	0.32	-1.0
2,914,128	-		Sama_2421	0.32	-0.2
2,914,128	-		Sama_2421	0.32	-0.2
2,914,128	-		Sama_2421	0.32	-1.3
2,914,128	-		Sama_2421	0.32	-0.4
2,914,128	-		Sama_2421	0.32	+0.8
2,914,158	+		Sama_2421	0.39	+0.2
2,914,158	+		Sama_2421	0.39	-2.4
2,914,158	+		Sama_2421	0.39	-0.4
2,914,159	-		Sama_2421	0.40	+0.8
2,914,159	-		Sama_2421	0.40	-0.5
2,914,159	-		Sama_2421	0.40	-0.3
2,914,159	-		Sama_2421	0.40	-0.6
2,914,159	-		Sama_2421	0.40	-0.3
2,914,314	+		Sama_2421	0.79	+1.7
2,914,324	+		Sama_2421	0.82	+1.2
2,914,351	+		Sama_2421	0.89	-2.2
2,914,356	-				+1.6
2,914,365	-				+1.0
2,914,365	-				+1.0
2,914,498	+				+0.8
2,914,541	+				+0.5
2,914,542	-				+0.6
2,914,547	-				-0.4
2,914,547	-				-1.1
2,914,547	-				+0.3
2,914,558	+				+0.8
2,914,559	-				-2.1
2,914,568	+				-0.4
2,914,580	-				+1.3
2,914,597	+				+0.1
2,914,598	-				-0.9
2,914,604	+				-0.4
2,914,604	+				-0.0
2,914,604	+				-2.4
2,914,605	-				-0.1
2,914,605	-				+0.9
2,914,605	-				+0.8
2,914,605	-				+0.5
2,914,672	+				+1.6
2,914,673	-				-0.3
2,914,673	-				+1.1
2,914,673	-				-0.0
2,914,673	-				-0.1
2,914,745	+				+0.0
2,914,756	+		Sama_2422	0.10	-0.2
2,914,780	+		Sama_2422	0.11	+1.0
2,914,780	+		Sama_2422	0.11	+1.4
2,914,781	-		Sama_2422	0.11	+0.8