Strain Fitness in Shewanella amazonensis SB2B around Sama_1973

Experiment: Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.005 mg/ml
2,400,171	+		Sama_1972	0.13	-0.9
2,400,175	+		Sama_1972	0.14	-1.9
2,400,203	+		Sama_1972	0.17	+1.7
2,400,204	-		Sama_1972	0.17	+0.2
2,400,299	+		Sama_1972	0.27	-0.3
2,400,299	+		Sama_1972	0.27	-0.9
2,400,300	-		Sama_1972	0.27	-0.1
2,400,300	-		Sama_1972	0.27	-0.8
2,400,336	+		Sama_1972	0.31	+0.4
2,400,337	-		Sama_1972	0.32	+0.7
2,400,371	+		Sama_1972	0.35	+0.3
2,400,395	+		Sama_1972	0.38	-0.2
2,400,395	+		Sama_1972	0.38	+0.3
2,400,395	+		Sama_1972	0.38	-0.0
2,400,395	+		Sama_1972	0.38	-0.3
2,400,395	+		Sama_1972	0.38	+1.1
2,400,395	+		Sama_1972	0.38	-0.7
2,400,396	-		Sama_1972	0.38	+1.3
2,400,396	-		Sama_1972	0.38	+1.2
2,400,396	-		Sama_1972	0.38	+2.1
2,400,396	-		Sama_1972	0.38	+1.1
2,400,396	-		Sama_1972	0.38	+0.2
2,400,436	+		Sama_1972	0.43	+0.3
2,400,437	-		Sama_1972	0.43	-0.7
2,400,462	+		Sama_1972	0.45	+0.6
2,400,462	+		Sama_1972	0.45	-0.9
2,400,462	+		Sama_1972	0.45	+0.7
2,400,497	-		Sama_1972	0.49	+1.5
2,400,590	+		Sama_1972	0.60	-0.9
2,400,591	-		Sama_1972	0.60	+0.7
2,400,592	+		Sama_1972	0.60	+1.0
2,400,592	+		Sama_1972	0.60	-2.3
2,400,593	-		Sama_1972	0.60	+0.5
2,400,664	-		Sama_1972	0.68	+0.7
2,400,664	-		Sama_1972	0.68	+0.3
2,400,688	+		Sama_1972	0.70	-0.6
2,400,717	+		Sama_1972	0.74	-0.3
2,400,717	+		Sama_1972	0.74	-0.5
2,400,718	-		Sama_1972	0.74	+0.1
2,400,721	+		Sama_1972	0.74	+0.9
2,400,721	+		Sama_1972	0.74	-1.4
2,400,722	-		Sama_1972	0.74	+0.9
2,400,744	-		Sama_1972	0.77	+1.3
2,400,757	-		Sama_1972	0.78	-0.2
2,400,769	+		Sama_1972	0.79	+0.2
2,400,769	+		Sama_1972	0.79	-2.1
2,400,769	+		Sama_1972	0.79	-0.9
2,400,770	-		Sama_1972	0.80	+0.4
2,400,823	-		Sama_1972	0.85	+1.0
2,400,851	-		Sama_1972	0.88	+1.7
2,400,884	-				-1.0
2,400,942	-				-0.1
2,400,959	-				+0.7
2,400,959	-				-0.1
2,400,992	+				-0.3
2,401,001	+				-0.1
2,401,001	+				-0.1
2,401,002	-				+1.1
2,401,023	-				+0.4
2,401,023	-				+1.7
2,401,055	+				-0.7
2,401,055	+				-0.7
2,401,055	+				-0.9
2,401,056	-				+0.6
2,401,056	-				+1.8
2,401,059	+				+0.5
2,401,059	+				+0.1
2,401,060	-				+0.4
2,401,097	+				+1.0
2,401,098	-				+0.9
2,401,119	+				-0.2
2,401,119	+				-0.7
2,401,120	-				-0.3
2,401,128	-				-0.9
2,401,147	+				-0.7
2,401,147	+				-0.0
2,401,147	+				-1.2
2,401,167	-				-0.3
2,401,196	+				-2.1
2,401,197	-				+0.7
2,401,273	+				-1.1
2,401,274	-				-1.7
2,401,354	+	sbcB	Sama_1973	0.14	-0.3
2,401,355	-	sbcB	Sama_1973	0.14	-2.3
2,401,357	+	sbcB	Sama_1973	0.14	-0.0
2,401,411	+	sbcB	Sama_1973	0.18	+1.0
2,401,454	+	sbcB	Sama_1973	0.21	-1.2
2,401,454	+	sbcB	Sama_1973	0.21	-1.1
2,401,510	+	sbcB	Sama_1973	0.25	-0.6
2,401,520	+	sbcB	Sama_1973	0.26	-0.1
2,401,558	+	sbcB	Sama_1973	0.28	-1.9
2,401,607	-	sbcB	Sama_1973	0.32	-0.2
2,401,607	-	sbcB	Sama_1973	0.32	-1.1
2,401,643	-	sbcB	Sama_1973	0.34	-0.1
2,401,712	+	sbcB	Sama_1973	0.39	+2.3
2,401,712	+	sbcB	Sama_1973	0.39	-1.2
2,401,712	+	sbcB	Sama_1973	0.39	-0.1
2,401,712	+	sbcB	Sama_1973	0.39	-0.9
2,401,713	-	sbcB	Sama_1973	0.39	+0.4
2,401,769	+	sbcB	Sama_1973	0.43	-1.1
2,401,769	+	sbcB	Sama_1973	0.43	-2.1
2,401,772	+	sbcB	Sama_1973	0.44	-2.5
2,401,772	+	sbcB	Sama_1973	0.44	-0.6
2,401,772	+	sbcB	Sama_1973	0.44	-0.3
2,401,773	-	sbcB	Sama_1973	0.44	-0.9
2,401,773	-	sbcB	Sama_1973	0.44	-0.9
2,401,818	+	sbcB	Sama_1973	0.47	+0.3
2,401,887	+	sbcB	Sama_1973	0.52	+1.7
2,401,887	+	sbcB	Sama_1973	0.52	+0.7
2,401,888	-	sbcB	Sama_1973	0.52	+0.1
2,401,888	-	sbcB	Sama_1973	0.52	-0.3
2,401,906	+	sbcB	Sama_1973	0.53	-0.3
2,401,907	-	sbcB	Sama_1973	0.53	-0.8
2,401,907	-	sbcB	Sama_1973	0.53	-0.9
2,401,915	+	sbcB	Sama_1973	0.54	-0.7
2,402,000	+	sbcB	Sama_1973	0.60	-0.3
2,402,001	-	sbcB	Sama_1973	0.60	-0.5
2,402,065	+	sbcB	Sama_1973	0.64	-0.7
2,402,065	+	sbcB	Sama_1973	0.64	-2.1
2,402,065	+	sbcB	Sama_1973	0.64	-2.1
2,402,131	+	sbcB	Sama_1973	0.69	-0.1
2,402,131	+	sbcB	Sama_1973	0.69	-0.3
2,402,131	+	sbcB	Sama_1973	0.69	-0.3
2,402,131	+	sbcB	Sama_1973	0.69	-2.1
2,402,131	+	sbcB	Sama_1973	0.69	+0.7
2,402,132	-	sbcB	Sama_1973	0.69	+0.0
2,402,224	+	sbcB	Sama_1973	0.76	-2.1
2,402,225	-	sbcB	Sama_1973	0.76	-1.8
2,402,253	-	sbcB	Sama_1973	0.78	-0.3
2,402,301	+	sbcB	Sama_1973	0.81	-1.5
2,402,325	+	sbcB	Sama_1973	0.83	-0.9
2,402,396	+	sbcB	Sama_1973	0.88	-0.2
2,402,414	+	sbcB	Sama_1973	0.89	-0.5
2,402,471	+				-0.3
2,402,472	-				+1.7
2,402,472	-				-1.4
2,402,544	+				-1.4
2,402,544	+				-0.3
2,402,544	+				-0.8
2,402,545	-				-1.7
2,402,553	-				-2.0
2,402,567	+				+1.0
2,402,594	+				+0.7
2,402,594	+				+0.7
2,402,594	+				+1.3
2,402,625	+				-0.7
2,402,625	+				-1.7
2,402,625	+				+0.3
2,402,625	+				+1.3
2,402,626	-				+0.4
2,402,667	-				+0.2
2,402,776	+		Sama_1974	0.12	-0.3
2,402,866	+		Sama_1974	0.22	+0.2
2,402,871	-		Sama_1974	0.23	+0.5
2,402,871	-		Sama_1974	0.23	+0.7
2,402,877	+		Sama_1974	0.24	+0.9
2,402,877	+		Sama_1974	0.24	-1.4
2,403,001	+		Sama_1974	0.37	+0.1
2,403,031	+		Sama_1974	0.41	-1.9
2,403,032	-		Sama_1974	0.41	-0.9
2,403,068	+		Sama_1974	0.45	+0.9
2,403,141	+		Sama_1974	0.53	-1.1
2,403,142	-		Sama_1974	0.53	+1.1
2,403,150	+		Sama_1974	0.54	-1.3
2,403,180	-		Sama_1974	0.58	+0.6
2,403,273	+		Sama_1974	0.68	+1.7
2,403,365	+		Sama_1974	0.78	-1.0
2,403,567	+				-0.6
2,403,567	+				+0.0
2,403,567	+				+0.9
2,403,568	-				+1.5
2,403,568	-				-0.9