Strain Fitness in Shewanella amazonensis SB2B around Sama_1841

Experiment: Cisplatin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cisplatin 0.005 mg/ml
2,240,998	+	ruvB	Sama_1839	0.65	-1.3
2,241,150	+	ruvB	Sama_1839	0.80	-2.2
2,241,150	+	ruvB	Sama_1839	0.80	-1.7
2,241,151	-	ruvB	Sama_1839	0.80	-2.7
2,241,175	-	ruvB	Sama_1839	0.82	-0.3
2,241,180	+	ruvB	Sama_1839	0.83	+0.7
2,241,181	-	ruvB	Sama_1839	0.83	-0.3
2,241,181	-	ruvB	Sama_1839	0.83	-0.9
2,241,181	-	ruvB	Sama_1839	0.83	-0.3
2,241,272	-				-1.7
2,241,272	-				-1.3
2,241,355	-				-2.8
2,241,371	-				-2.5
2,241,371	-				-1.6
2,241,399	-				-1.9
2,241,692	+	ruvA	Sama_1840	0.52	-2.3
2,241,931	-				-0.3
2,241,982	-				-0.3
2,241,991	-				-0.3
2,241,991	-				-3.3
2,242,406	-	ruvC	Sama_1841	0.81	-0.3
2,242,422	+	ruvC	Sama_1841	0.84	+0.7
2,242,422	+	ruvC	Sama_1841	0.84	+0.1
2,242,549	+				-1.3
2,242,554	+				+0.1
2,242,555	-				-0.5
2,242,555	-				-0.6
2,242,555	-				+0.1
2,242,730	-		Sama_1842	0.30	-0.7
2,242,730	-		Sama_1842	0.30	-1.8
2,242,735	-		Sama_1842	0.30	+0.1
2,242,735	-		Sama_1842	0.30	-2.2
2,242,735	-		Sama_1842	0.30	-1.2
2,242,836	-		Sama_1842	0.44	-1.3
2,242,836	-		Sama_1842	0.44	-1.2
2,242,901	-		Sama_1842	0.53	-0.9
2,242,901	-		Sama_1842	0.53	-1.7
2,242,901	-		Sama_1842	0.53	+0.7
2,243,075	-		Sama_1842	0.76	+0.3
2,243,255	-				-2.6
2,243,277	+				-2.2
2,243,377	-				+1.1
2,243,377	-				-0.8
2,243,377	-				+0.9